Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Forward (+)

9693768 .. 9695191

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G166900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAACATGATTTGCGGGTCCTATTATTTTCCCAAAAAAAACAAAGGCCATGACGCCCACTTCATATGTGCACAAGAGCAGACTACTGGTGTGGCAGATGGCGTTGGTGATTGGGCAAAGCTTGGTGTGGATGCTAGCCAGTACGCAAGAGAACTCATGCGCAACTCGATCAAGTCGGTCAAAAAGCAGCAAGCTTTTGGAGGCGTTGACCCAAGAAGGGTTTTGAACGAAGCGTATGTAAAGACCAAGTGTAAAGGGTCCTCAACCGCTTGCATTCTTACCCTTAAAGACAAAGGAGTTTTGAATTTTGTGAACGTTGGGGACAGTGGTTTCATGGTGCTTAGAAACTACAAACTCTTGTACGTGTCTCCACGTCCACAGCATAGGTTTAACCATCCGTACCAACTGGGATACAGCACCCACTTTGATAATCCTCGTTCGGCTACGAAGACCAAAATTAGGGTTTTTCCAGGGGATATTTTAGTGCTTGGGACTGATGGGTTGTGGGATAACATGTACCCGAATGAGATAGTGCAATTTGTAGAAAACATGAGAGAAATGAAGCCGGAGGCATTGGCTTGTGCCTTGGCAAGTGTGGCTAGGGGTAGGTCGCTGGACAAGGGCAGGTTTAGTCCTTTTTCAAGAGCAGCTCAGAAGGCTGGAATAAAGCACCTAGGAGGCAAGAAGGACGACATTACTGTTGTAGTAGGTTATATTATGGCGACTTCTACGCCAGCCCCCTCTTGTGTTGGGGGTTTGGAAATCATGTCGGATAACACAACACAACTGGGGCTGAAGCGCTCCACTCCCTGGTGGCGTCTTTGTTCGTGGCCTTGTAACTGTTTTAGGAGCTCCACCCCCAAAAAAGACACAACACGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

295

Amino Acids

32.69

Weight (kDa)

9.6

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	615
AccB7I	CCANNNNNTGG	1 cut(s)	810
AciI	CCGC	2 cut(s)	15, 267
AclI	AACGTT	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	304, 879
AcuI	CTGAAG	1 cut(s)	815
AcyI	GRCGYC	2 cut(s)	54, 817
AfaI	GTAC	4 cut(s)	143, 362, 401, 518
AfeI	AGCGCT	1 cut(s)	800
AfiI	CCNNNNNNNGG	3 cut(s)	217, 459, 810
AflIII	ACRYGT	2 cut(s)	363, 513
AgsI	TTSAA	3 cut(s)	226, 304, 642
AjiI	CACGTC	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	469, 809
AluBI	AGCT	4 cut(s)	121, 194, 650, 852
AluI	AGCT	4 cut(s)	121, 194, 650, 852
Alw21I	GWGCWC	2 cut(s)	73, 854
Alw26I	GTCTC	1 cut(s)	372
Alw44I	GTGCAC	1 cut(s)	69
Aor51HI	AGCGCT	1 cut(s)	800
AoxI	GGCC	2 cut(s)	46, 830
ApaLI	GTGCAC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	187, 647
ApoI	RAATTY	2 cut(s)	304, 879
AspA2I	CCTAGG	1 cut(s)	673
AspLEI	GCGC	2 cut(s)	162, 801
AspS9I	GGNCC	2 cut(s)	18, 258
AsuHPI	GGTGA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	18, 258
AvrII	CCTAGG	1 cut(s)	673
BaeGI	GKGCMC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	854
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	2 cut(s)	73, 854
BbvI	GCAGC	2 cut(s)	199, 659
BccI	CCATC	3 cut(s)	92, 402, 491
BciT130I	CCWGG	2 cut(s)	471, 811
BciVI	GTATCC	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	3 cut(s)	135, 600, 674
BfoI	RGCGCY	1 cut(s)	802
BfuAI	ACCTGC	1 cut(s)	615
BfuI	GTATCC	1 cut(s)	404
BisI	GCNGC	2 cut(s)	188, 648
BlnI	CCTAGG	1 cut(s)	673
BlsI	GCNGC	2 cut(s)	189, 649
Bme1390I	CCNGG	2 cut(s)	471, 811
Bme18I	GGWCC	2 cut(s)	18, 258
BmgBI	CACGTC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	18, 258
BmiI	GGNNCC	2 cut(s)	19, 259
BmrFI	CCNGG	2 cut(s)	471, 811
BmrI	ACTGGG	2 cut(s)	416, 797
BmsI	GCATC	1 cut(s)	121
BmtI	GCTAGC	1 cut(s)	138
BmuI	ACTGGG	2 cut(s)	416, 797
BpiI	GAAGAC	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	2 cut(s)	54, 817
BsaJI	CCNNGG	4 cut(s)	470, 585, 673, 809
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 459, 810
Bse1I	ACTGG	4 cut(s)	91, 139, 411, 792
BseBI	CCWGG	2 cut(s)	471, 811
BseDI	CCNNGG	4 cut(s)	470, 585, 673, 809
BseGI	GGATG	2 cut(s)	136, 394
BseLI	CCNNNNNNNGG	3 cut(s)	217, 459, 810
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	4 cut(s)	91, 139, 411, 792
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	199, 659
BshFI	GGCC	2 cut(s)	48, 832
BsiHKAI	GWGCWC	2 cut(s)	73, 854
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	2 cut(s)	335, 505
BslI	CCNNNNNNNGG	3 cut(s)	217, 459, 810
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	2 cut(s)	335, 505
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	48, 832
Bsp1286I	GDGCHC	2 cut(s)	73, 854
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	2 cut(s)	15, 267
BspANI	GGCC	2 cut(s)	48, 832
BspCNI	CTCAG	1 cut(s)	664
BspLI	GGNNCC	2 cut(s)	19, 259
BspMI	ACCTGC	1 cut(s)	615
BspOI	GCTAGC	1 cut(s)	138
BsrI	ACTGG	4 cut(s)	91, 139, 411, 792
BssECI	CCNNGG	4 cut(s)	470, 585, 673, 809
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	2 cut(s)	54, 817
BssT1I	CCWWGG	2 cut(s)	585, 673
Bst2UI	CCWGG	2 cut(s)	471, 811
Bst4CI	ACNGT	3 cut(s)	326, 700, 842
BstACI	GRCGYC	2 cut(s)	54, 817
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	4 cut(s)	136, 192, 271, 735
BstDEI	CTNAG	2 cut(s)	341, 651
BstF5I	GGATG	2 cut(s)	136, 394
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	2 cut(s)	162, 801
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 656
BstNI	CCWGG	2 cut(s)	471, 811
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	2 cut(s)	469, 809
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	199, 659
BstV2I	GAAGAC	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	48, 832
BtrI	CACGTC	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	136, 394
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	615
Cac8I	GCNNGC	4 cut(s)	136, 192, 271, 735
CfoI	GCGC	2 cut(s)	162, 801
Cfr13I	GGNCC	2 cut(s)	18, 258
CseI	GACGC	2 cut(s)	62, 806
Csp6I	GTAC	4 cut(s)	142, 361, 400, 517
CviAII	CATG	7 cut(s)	7, 50, 157, 334, 514, 550, 766
CviQI	GTAC	4 cut(s)	142, 361, 400, 517
DdeI	CTNAG	2 cut(s)	341, 651
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	852
Eco130I	CCWWGG	2 cut(s)	585, 673
Eco24I	GRGCYC	1 cut(s)	854
Eco47I	GGWCC	2 cut(s)	18, 258
Eco47III	AGCGCT	1 cut(s)	800
Eco53kI	GAGCTC	1 cut(s)	852
Eco57I	CTGAAG	1 cut(s)	815
EcoICRI	GAGCTC	1 cut(s)	852
EcoO109I	RGGNCCY	2 cut(s)	18, 258
EcoRII	CCWGG	2 cut(s)	469, 809
EcoT14I	CCWWGG	2 cut(s)	585, 673
EcoT38I	GRGCYC	1 cut(s)	854
ErhI	CCWWGG	2 cut(s)	585, 673
FaeI	CATG	7 cut(s)	10, 53, 160, 337, 517, 553, 769
FaqI	GGGAC	2 cut(s)	335, 505
FatI	CATG	7 cut(s)	6, 49, 156, 333, 513, 549, 765
FauI	CCCGC	1 cut(s)	8
FauNDI	CATATG	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	188, 648
FokI	GGATG	2 cut(s)	143, 381
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	2 cut(s)	188, 648
FspBI	CTAG	3 cut(s)	135, 600, 674
FspI	TGCGCA	1 cut(s)	161
GlaI	GCGC	2 cut(s)	161, 800
GluI	GCNGC	2 cut(s)	188, 648
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	2 cut(s)	48, 832
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	2 cut(s)	62, 806
HhaI	GCGC	2 cut(s)	162, 801
Hin1I	GRCGYC	2 cut(s)	54, 817
Hin1II	CATG	7 cut(s)	10, 53, 160, 337, 517, 553, 769
Hin6I	GCGC	2 cut(s)	160, 799
HinP1I	GCGC	2 cut(s)	160, 799
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	2 cut(s)	119, 192
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	4 cut(s)	71, 208, 313, 377
Hpy188I	TCNGA	2 cut(s)	654, 772
Hpy188III	TCNNGA	1 cut(s)	642
Hpy8I	GTNNAC	4 cut(s)	71, 208, 313, 377
HpyAV	CCTTC	3 cut(s)	210, 649, 679
HpyCH4III	ACNGT	3 cut(s)	326, 700, 842
HpyCH4IV	ACGT	3 cut(s)	315, 363, 373
HpyCH4V	TGCA	3 cut(s)	71, 273, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 656
HpyF3I	CTNAG	2 cut(s)	341, 651
HpySE526I	ACGT	3 cut(s)	315, 363, 373
Hsp92I	GRCGYC	2 cut(s)	54, 817
Hsp92II	CATG	7 cut(s)	10, 53, 160, 337, 517, 553, 769
HspAI	GCGC	2 cut(s)	160, 799
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	806, 849, 857
Lsp1109I	GCAGC	2 cut(s)	199, 659
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	3 cut(s)	135, 600, 674
MaeII	ACGT	3 cut(s)	315, 363, 373
MaeIII	GTNAC	1 cut(s)	836
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	1 cut(s)	460
MhlI	GDGCHC	2 cut(s)	73, 854
MluCI	AATT	4 cut(s)	304, 456, 536, 879
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	6 cut(s)	194, 271, 444, 562, 671, 751
MseI	TTAA	2 cut(s)	285, 390
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	2 cut(s)	471, 811
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	471, 811
MwoI	GCNNNNNNNGC	2 cut(s)	596, 656
NdeI	CATATG	1 cut(s)	65
NdeII	GATC	1 cut(s)	168
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	7 cut(s)	10, 53, 160, 337, 517, 553, 769
NlaIV	GGNNCC	2 cut(s)	19, 259
NsbI	TGCGCA	1 cut(s)	161
NspI	RCATGY	1 cut(s)	517
PciI	ACATGT	1 cut(s)	513
PctI	GAATGC	1 cut(s)	273
PflMI	CCANNNNNTGG	1 cut(s)	810
PkrI	GCNGC	2 cut(s)	189, 649
Ppu21I	YACGTR	1 cut(s)	364
PpuMI	RGGWCCY	2 cut(s)	18, 258
PscI	ACATGT	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	854
Psp1406I	AACGTT	1 cut(s)	315
Psp5II	RGGWCCY	2 cut(s)	18, 258
Psp6I	CCWGG	2 cut(s)	469, 809
PspGI	CCWGG	2 cut(s)	469, 809
PspN4I	GGNNCC	2 cut(s)	19, 259
PspPI	GGNCC	2 cut(s)	18, 258
PspPPI	RGGWCCY	2 cut(s)	18, 258
RsaI	GTAC	4 cut(s)	143, 362, 401, 518
RsaNI	GTAC	4 cut(s)	142, 361, 400, 517
SacI	GAGCTC	1 cut(s)	854
SaqAI	TTAA	2 cut(s)	285, 390
SatI	GCNGC	2 cut(s)	188, 648
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	18, 258
ScrFI	CCNGG	2 cut(s)	471, 811
SduI	GDGCHC	2 cut(s)	73, 854
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	2 cut(s)	18, 258
Sse9I	AATT	4 cut(s)	304, 456, 536, 879
SsiI	CCGC	2 cut(s)	15, 267
SspMI	CTAG	3 cut(s)	135, 600, 674
SstI	GAGCTC	1 cut(s)	854
StyD4I	CCNGG	2 cut(s)	469, 809
StyI	CCWWGG	2 cut(s)	585, 673
TaaI	ACNGT	3 cut(s)	326, 700, 842
TaiI	ACGT	3 cut(s)	318, 366, 376
TaqI	TCGA	1 cut(s)	167
TaqII	GACCGA	1 cut(s)	166
TasI	AATT	4 cut(s)	304, 456, 536, 879
Tru1I	TTAA	2 cut(s)	285, 390
Tru9I	TTAA	2 cut(s)	285, 390
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	2 cut(s)	187, 647
TspDTI	ATGAA	4 cut(s)	17, 52, 322, 575
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	810
VneI	GTGCAC	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	18, 258
XapI	RAATTY	2 cut(s)	304, 879
XceI	RCATGY	1 cut(s)	517
XmaJI	CCTAGG	1 cut(s)	673
XspI	CTAG	3 cut(s)	135, 600, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.