Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004533

Physical Location & Seq

Genomic Coordinates Reverse (-)

10897039 .. 10897869

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29614

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTCATGAACTATAATGGATCAATCAAACGCACACGAGCCGAACCTGATCAAGAGCAAGAGGCCGTGATCTTCAAGAAACCTAGGGTTGAAGGCAGCAAACCAGAGAGGTCCGTGATGCCGTACCAAGAACTGAGTCCAAACTATGAATCTGAAACAAGGCTGAAGATGGTATCTGGATCTTTCTATTTGCCCAAGGAAAACGAACTGCAACCCCAAGGTGAAGACGCTCACTTCATATGTGCAGAAGAAAACACCATTGGAGTGGCGGACGGTGTTGGTGGATGGGCCAACAAGGGCATCGACTCGGGTCTCTACGCTCGAGAACTCATGATGAACTCGGTCATGGCGGTTCACAATCAACACATGACCTCATCAGGAGTCATTAATCCAAGAAAAGTGTTGGAGGAGGCTTTCTCAAACACCAAGAACATCCAAGGCTCGTCAACCGCTTGCATTGTCACGCTAAACAAAGATGTCTTGCACTATGCGAATGTTGGTGACAGCGGTTTCATGTTGTTTCGAAACAACAAGTGCTTGTTCAGGTCTTCAGCTCAACAGCACAGGTTTAACTGTCCTTTTCAGTTGGGGAACGCCCCAAGAAGTGATCATCCGAGCTCGGCTACGGGGGTGCCGGTTAGGGTGATTCCGGGAGATGTCATAGTTCTTGGGACTGATGGGTTGCTTGATAACATGTTTGGGAGGGAAATCGAGCAAGTTTTGGAGGACAAGACTGATGAAGGTGATGTGGATCCGGAGATGTTGGCTGGGATTATAGCGGAGTTGGCTTTGTATAATTCTTTTTTTTTTTTGGTTACAATCGGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

276

Amino Acids

30.46

Weight (kDa)

5.06

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11080 FvH4_3g11340
malus_domestica	MD08G1210800.v1.1 MD11G1261400.v1.1
prunus_persica	Prupe.4G157000_v2.0.a1 Prupe.4G166600_v2.0.a1 Prupe.4G166700_v2.0.a1 Prupe.4G166900_v2.0.a1 Prupe.4G167000_v2.0.a1 Prupe.5G049700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015721 RchiOBHm_Chr5g0018291
rosa_laevigata	RLG00000012617 RLG00000032222 RLG00000032323 RLG00000032348
rosa_multiflora	Rmu_co8399107.1_g000001 Rmu_sc0042595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059460 Rroxscaffold_1G00060800
rosa_rugosa	Rorug05G0029500 Rorug05G0041100
rosa_samantha	Rh5AG122800 Rh5AG134200 Rh5BG122000 Rh5BG130200 Rh5BG132700 Rh5CG144700 Rh5DG120800 Rh5DG134400
rosa_wichuraiana	Rw5G010600 Rw5G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	631
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	5 cut(s)	269, 350, 450, 507, 779
AclWI	GGATC	4 cut(s)	28, 187, 746, 759
AcuI	CTGAAG	2 cut(s)	185, 534
AfaI	GTAC	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	2 cut(s)	76, 92
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	2 cut(s)	554, 618
AluI	AGCT	2 cut(s)	554, 618
Alw21I	GWGCWC	1 cut(s)	620
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	4 cut(s)	28, 187, 746, 759
Ama87I	CYCGRG	2 cut(s)	307, 321
Aor13HI	TCCGGA	1 cut(s)	754
AoxI	GGCC	3 cut(s)	63, 288, 825
ApeKI	GCWGC	1 cut(s)	96
AseI	ATTAAT	1 cut(s)	387
AspA2I	CCTAGG	1 cut(s)	83
AspS9I	GGNCC	3 cut(s)	111, 288, 825
AsuC2I	CCSGG	1 cut(s)	651
AsuHPI	GGTGA	4 cut(s)	233, 512, 655, 755
AsuII	TTCGAA	1 cut(s)	523
AvaI	CYCGRG	2 cut(s)	307, 321
AvaII	GGWCC	1 cut(s)	111
AvrII	CCTAGG	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	620
BauI	CACGAG	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	231, 540
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	3 cut(s)	163, 279, 671
BceAI	ACGGC	2 cut(s)	50, 106
BclI	TGATCA	2 cut(s)	49, 607
BcnI	CCSGG	1 cut(s)	651
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	97
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	651
Bme18I	GGWCC	1 cut(s)	111
BmeT110I	CYCGRG	2 cut(s)	307, 321
BmgT120I	GGNCC	3 cut(s)	111, 288, 825
BmiI	GGNNCC	3 cut(s)	633, 753, 826
BmrFI	CCNGG	1 cut(s)	651
BmsI	GCATC	2 cut(s)	108, 309
BoxI	GACNNNNGTC	1 cut(s)	309
BpiI	GAAGAC	2 cut(s)	231, 540
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
Bpu14I	TTCGAA	1 cut(s)	523
BpuMI	CCSGG	1 cut(s)	651
BsaBI	GATNNNNATC	1 cut(s)	750
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	4 cut(s)	83, 195, 217, 436
BsaWI	WCCGGW	1 cut(s)	754
Bse118I	RCCGGY	1 cut(s)	634
Bse8I	GATNNNNATC	1 cut(s)	750
BseAI	TCCGGA	1 cut(s)	754
BseDI	CCNNGG	4 cut(s)	83, 195, 217, 436
BseGI	GGATG	3 cut(s)	290, 432, 610
BseJI	GATNNNNATC	1 cut(s)	750
BseMII	CTCAG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	108
BseYI	CCCAGC	1 cut(s)	767
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	65, 290, 827
BshNI	GGYRCC	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	620
BsiHKCI	CYCGRG	2 cut(s)	307, 321
BsiSI	CCGG	3 cut(s)	635, 650, 755
BslFI	GGGAC	1 cut(s)	685
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	685
BsnI	GGCC	3 cut(s)	65, 290, 827
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	2 cut(s)	307, 321
Bsp119I	TTCGAA	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	620
Bsp13I	TCCGGA	1 cut(s)	754
Bsp143I	GATC	6 cut(s)	20, 49, 69, 179, 607, 751
BspACI	CCGC	5 cut(s)	269, 350, 450, 507, 779
BspANI	GGCC	3 cut(s)	65, 290, 827
BspCNI	CTCAG	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	754
BspHI	TCATGA	2 cut(s)	6, 330
BspLI	GGNNCC	3 cut(s)	633, 753, 826
BspPI	GGATC	4 cut(s)	28, 187, 746, 759
BspT104I	TTCGAA	1 cut(s)	523
BspT107I	GGYRCC	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	634
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	4 cut(s)	83, 195, 217, 436
BssMI	GATC	6 cut(s)	20, 49, 69, 179, 607, 751
BssSI	CACGAG	1 cut(s)	36
BssT1I	CCWWGG	4 cut(s)	83, 195, 217, 436
Bst2BI	CACGAG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	275, 575
BstBI	TTCGAA	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	290, 432, 610
BstKTI	GATC	6 cut(s)	23, 52, 72, 182, 610, 754
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	6 cut(s)	20, 49, 69, 179, 607, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstNSI	RCATGY	1 cut(s)	697
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	108
BstV2I	GAAGAC	2 cut(s)	231, 540
BstX2I	RGATCY	2 cut(s)	179, 751
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	2 cut(s)	179, 751
BsuRI	GGCC	3 cut(s)	65, 290, 827
BtsCI	GGATG	3 cut(s)	290, 432, 610
Cac8I	GCNNGC	1 cut(s)	454
CciI	TCATGA	2 cut(s)	6, 330
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	3 cut(s)	111, 288, 825
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	6 cut(s)	7, 331, 346, 367, 514, 694
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	6 cut(s)	22, 51, 71, 181, 609, 753
DpnII	GATC	6 cut(s)	20, 49, 69, 179, 607, 751
EciI	GGCGGA	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	618
Eco130I	CCWWGG	4 cut(s)	83, 195, 217, 436
Eco24I	GRGCYC	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	618
Eco57I	CTGAAG	2 cut(s)	185, 534
Eco88I	CYCGRG	2 cut(s)	307, 321
EcoICRI	GAGCTC	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	825
EcoT14I	CCWWGG	4 cut(s)	83, 195, 217, 436
EcoT38I	GRGCYC	1 cut(s)	620
ErhI	CCWWGG	4 cut(s)	83, 195, 217, 436
FaeI	CATG	6 cut(s)	10, 334, 349, 370, 517, 697
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	6 cut(s)	6, 330, 345, 366, 513, 693
FauNDI	CATATG	1 cut(s)	239
FbaI	TGATCA	2 cut(s)	49, 607
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	3 cut(s)	297, 419, 597
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	97
GsaI	CCCAGC	1 cut(s)	771
HaeIII	GGCC	3 cut(s)	65, 290, 827
HapII	CCGG	3 cut(s)	635, 650, 755
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	6 cut(s)	10, 334, 349, 370, 517, 697
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	5 cut(s)	136, 149, 305, 381, 646
HpaII	CCGG	3 cut(s)	635, 650, 755
HphI	GGTGA	4 cut(s)	233, 512, 655, 755
Hpy166II	GTNNAC	2 cut(s)	355, 447
Hpy188I	TCNGA	2 cut(s)	154, 615
Hpy188III	TCNNGA	8 cut(s)	7, 53, 76, 177, 323, 331, 378, 755
Hpy8I	GTNNAC	2 cut(s)	355, 447
HpyAV	CCTTC	2 cut(s)	86, 734
HpyCH4III	ACNGT	2 cut(s)	275, 575
HpyCH4V	TGCA	4 cut(s)	211, 245, 456, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	6 cut(s)	10, 334, 349, 370, 517, 697
Kpn2I	TCCGGA	1 cut(s)	754
Ksp22I	TGATCA	2 cut(s)	49, 607
Kzo9I	GATC	6 cut(s)	20, 49, 69, 179, 607, 751
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	2 cut(s)	108, 309
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	460, 500, 814
MalI	GATC	6 cut(s)	22, 51, 71, 181, 609, 753
MboI	GATC	6 cut(s)	20, 49, 69, 179, 607, 751
MboII	GAAGA	5 cut(s)	64, 178, 236, 260, 540
MflI	RGATCY	2 cut(s)	179, 751
MhlI	GDGCHC	1 cut(s)	620
MluCI	AATT	1 cut(s)	796
MlyI	GAGTC	3 cut(s)	145, 299, 390
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	7 cut(s)	55, 102, 382, 400, 403, 696, 718
MroI	TCCGGA	1 cut(s)	754
MseI	TTAA	2 cut(s)	387, 570
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	507
MspI	CCGG	3 cut(s)	635, 650, 755
MspR9I	CCNGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	1 cut(s)	785
NciI	CCSGG	1 cut(s)	651
NdeI	CATATG	1 cut(s)	239
NdeII	GATC	6 cut(s)	20, 49, 69, 179, 607, 751
NlaIII	CATG	6 cut(s)	10, 334, 349, 370, 517, 697
NlaIV	GGNNCC	3 cut(s)	633, 753, 826
NmeAIII	GCCGAG	1 cut(s)	599
NmuCI	GTSAC	2 cut(s)	460, 500
NspI	RCATGY	1 cut(s)	697
NspV	TTCGAA	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	321
PagI	TCATGA	2 cut(s)	6, 330
PciI	ACATGT	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	149, 646
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	3 cut(s)	144, 299, 389
PpsI	GAGTC	3 cut(s)	144, 299, 389
PscI	ACATGT	1 cut(s)	693
PshAI	GACNNNNGTC	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	767
PspN4I	GGNNCC	3 cut(s)	633, 753, 826
PspPI	GGNCC	3 cut(s)	111, 288, 825
PsuI	RGATCY	2 cut(s)	179, 751
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	620
SaqAI	TTAA	2 cut(s)	387, 570
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	6 cut(s)	20, 49, 69, 179, 607, 751
Sau96I	GGNCC	3 cut(s)	111, 288, 825
SchI	GAGTC	3 cut(s)	145, 299, 390
ScrFI	CCNGG	1 cut(s)	651
SduI	GDGCHC	1 cut(s)	620
SfaNI	GCATC	2 cut(s)	108, 309
Sfr274I	CTCGAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	523
SinI	GGWCC	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	1 cut(s)	796
SsiI	CCGC	5 cut(s)	269, 350, 450, 507, 779
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	620
StyD4I	CCNGG	1 cut(s)	649
StyI	CCWWGG	4 cut(s)	83, 195, 217, 436
TaaI	ACNGT	2 cut(s)	275, 575
TaqI	TCGA	4 cut(s)	303, 322, 523, 711
TaqII	GACCGA	1 cut(s)	331
TasI	AATT	1 cut(s)	796
TfiI	GAWTC	2 cut(s)	149, 646
Tru1I	TTAA	2 cut(s)	387, 570
Tru9I	TTAA	2 cut(s)	387, 570
TseFI	GTSAC	2 cut(s)	460, 500
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	2 cut(s)	460, 500
TspDTI	ATGAA	6 cut(s)	23, 162, 226, 350, 502, 753
TspGWI	ACGGA	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	111
VspI	ATTAAT	1 cut(s)	387
XceI	RCATGY	1 cut(s)	697
XhoI	CTCGAG	1 cut(s)	321
XmaJI	CCTAGG	1 cut(s)	83
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.