RchiOBHm_Chr5g0018191

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005954
Physical Location & Seq
Forward (+)
12709723 .. 12711295
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29841

Sequence Viewer

Length: 1455 bp
ATGCTAGAAATGGCACCAAGGCTTTCACAGCTCTTACTCCTTCCTATTCTTCTAGTTCTCTCCATTTCTTGTACAGCCTCAGCTTCATCCTCAGCTCCTGAGAACTTTGTTTCATGTCTTTTAAGCCATTCGCTCCCTTCTCACCCAATCGGTCCAGCAATTTACACTCCCAACAATGCTTCTTACTCCTCCGTTTTGGAATCCTACATCCGAAACCTCCGTTTCAACGAATCATACACCCGAAAACCTTACCTTATTATCACCGCATTGCACGTATCCCATGTGCAACAAGCCATCCTTTGTGCTCAAAAGCACAACTTACAGATGAAAATTAGAAGCGGAGGCCACGATTACGAGGGTGTGTCGTATGTGGCTGAAGTCCCATTCTTCATCCTCGACCTGTTTAATCTTCGAACTATCAACGTAGACATCAAAACCGAGACTGCATGGGTCCAGGCAGGTGCTACTCTAGGCGAAGTTTACTACAGAATTTACGAGAAAAGCAAAGTCCATGGATTTCCCGCAGGTGTATGCCCCACAGTCGGTGTTGGAGGACACTTCAGTGGCGGTGGATATGGTAACATGATGAGAAAGTACGGCTTGTCAGTTGACAACATAGTCGATGCACAAATAGTTGATGTGCGTGGAAGACTTCTTGATCGAAAATCGATGGGAGAAGACCTCTTTTGGGCCATCACCGGAGGCGGCGGAGCCAGCTTTGGAGTGGTGATCGCCTACAAGATCAACCTTGTACGCGTCCCAGAGACCGTTACTGTTTTCAGGGTTATAAGAACCTTGGAACAGAATGCAACTGACATTGTGTATCGTTGGCAATATGTCGCAAATAAGCTTGACAATGACTTGTTCATCAGGCTTACCATGGATGTTGTCAATGTAACTGGCTCTCAAACTGGAGAAAAGACTCTAAGAGCTACATTCAACGCCTTGTTTCTTGGAGACTCCGCAAGACTACTCACCGTGATGAACAAGAGTTTCCCTGAACTGGGTTTGGAGCAATCCGATTGCCAAGAAATGAGTTGGGTTGAATCGACGCTTTTCTGGACAAGCTTTGCAAACGGGACAGCTCCGGAGGCTTTGCTCTCTAGAGTTCCTCAAGTACTTACCCACTTGAAGAGGAAGTCGGACTACGTCAAGCAGCCAATTCCGAAAGCTGGTTTGAAGTGGATTATTCAGAAAATGATCGAGTTGCAGACGCCCATGTTGACTTTCAATCCTTACGGCGGAAGAATGGCTGAGATTGCGGCATCTGCAAAACCTTTTCCACATAGAGCTGGCAATCTCTGGAAGGTTCAGTATGCAACAAACTGGGACGCTTCTGGGTCCGAGGCTGCGGAGAAATACATCGATTTGACGAGGAAGTTGTTCGAGTACATGACTCCTTTCGTTTCCAAGAACCCGAGGGAAGCCTTCTTCTGTTGGGCCATCCCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

484

Amino Acids

53.98

Weight (kDa)

8.82

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 85 - 219 4e-22 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
AarI CACCTGC 2 cut(s) 449, 515
AasI GACNNNNNNGTC 1 cut(s) 617
Acc36I ACCTGC 2 cut(s) 449, 515
AccB1I GGYRCC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 426
AccII CGCG 1 cut(s) 756
AccIII TCCGGA 1 cut(s) 1087
AcsI RAATTY 1 cut(s) 489
AcuI CTGAAG 2 cut(s) 396, 544
AcyI GRCGYC 1 cut(s) 1214
AfaI GTAC 5 cut(s) 73, 596, 753, 1119, 1391
AfiI CCNNNNNNNGG 6 cut(s) 542, 688, 1003, 1004, 1172, 1241
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 6 cut(s) 226, 940, 1046, 1132, 1180, 1231
AjnI CCWGG 1 cut(s) 453
AleI CACNNNNGTG 1 cut(s) 561
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 3 cut(s) 434, 758, 951
AlwNI CAGNNNCTG 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 1417
Aor13HI TCCGGA 1 cut(s) 1087
AoxI GGCC 3 cut(s) 343, 690, 1440
ApeKI GCWGC 2 cut(s) 1156, 1349
ApoI RAATTY 1 cut(s) 489
Asp700I GAANNNNTTC 1 cut(s) 1382
AspS9I GGNCC 5 cut(s) 152, 451, 690, 1341, 1440
AsuHPI GGTGA 5 cut(s) 134, 253, 688, 739, 967
AsuII TTCGAA 1 cut(s) 412
AvaI CYCGRG 1 cut(s) 1417
AvaII GGWCC 3 cut(s) 152, 451, 1341
BanI GGYRCC 1 cut(s) 13
BarI GAAGNNNNNNTAC 2 cut(s) 1130, 1162
BbsI GAAGAC 2 cut(s) 655, 684
Bbv12I GWGCWC 1 cut(s) 307
BbvCI CCTCAGC 2 cut(s) 79, 91
BbvI GCAGC 2 cut(s) 1168, 1336
BccI CCATC 4 cut(s) 302, 664, 701, 1451
BceAI ACGGC 2 cut(s) 613, 1255
BciT130I CCWGG 1 cut(s) 455
BciVI GTATCC 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 434, 758, 951
BfaI CTAG 4 cut(s) 5, 53, 470, 1104
BfmI CTRYAG 1 cut(s) 484
BfuAI ACCTGC 2 cut(s) 449, 515
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 4 cut(s) 706, 1157, 1263, 1350
BlsI GCNGC 4 cut(s) 707, 1158, 1264, 1351
BmcAI AGTACT 1 cut(s) 1119
Bme1390I CCNGG 1 cut(s) 455
Bme18I GGWCC 3 cut(s) 152, 451, 1341
BmeT110I CYCGRG 1 cut(s) 1417
BmgT120I GGNCC 5 cut(s) 152, 451, 690, 1341, 1440
BmiI GGNNCC 4 cut(s) 15, 452, 712, 1342
BmrFI CCNGG 1 cut(s) 455
BmrI ACTGGG 2 cut(s) 1013, 1336
BmsI GCATC 2 cut(s) 613, 1274
BmuI ACTGGG 2 cut(s) 1013, 1336
BpiI GAAGAC 2 cut(s) 655, 684
BplI GAGNNNNNCTC 2 cut(s) 666, 698
BpmI CTGGAG 1 cut(s) 933
Bpu10I CCTNAGC 2 cut(s) 79, 91
Bpu14I TTCGAA 1 cut(s) 412
BpuEI CTTGAG 1 cut(s) 1098
Bsa29I ATCGAT 2 cut(s) 668, 1365
BsaAI YACGTR 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 1214
BsaI GGTCTC 1 cut(s) 758
BsaJI CCNNGG 6 cut(s) 17, 511, 795, 879, 1344, 1418
BsaWI WCCGGW 2 cut(s) 698, 1087
Bsc4I CCNNNNNNNGG 6 cut(s) 542, 688, 1003, 1004, 1172, 1241
Bse1I ACTGG 4 cut(s) 904, 916, 1008, 1331
Bse3DI GCAATG 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 1087
BseBI CCWGG 1 cut(s) 455
BseCI ATCGAT 2 cut(s) 668, 1365
BseDI CCNNGG 6 cut(s) 17, 511, 795, 879, 1344, 1418
BseGI GGATG 6 cut(s) 86, 207, 294, 390, 889, 1443
BseLI CCNNNNNNNGG 6 cut(s) 542, 688, 1003, 1004, 1172, 1241
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 4 cut(s) 90, 93, 105, 1245
BseNI ACTGG 4 cut(s) 904, 916, 1008, 1331
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 1168, 1336
Bsh1236I CGCG 1 cut(s) 756
BshFI GGCC 3 cut(s) 345, 692, 1442
BshNI GGYRCC 1 cut(s) 13
BshVI ATCGAT 2 cut(s) 668, 1365
BsiHKAI GWGCWC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 1417
BsiSI CCGG 2 cut(s) 699, 1088
BslFI GGGAC 4 cut(s) 365, 743, 1093, 1343
BslI CCNNNNNNNGG 6 cut(s) 542, 688, 1003, 1004, 1172, 1241
BsmAI GTCTC 3 cut(s) 434, 758, 951
BsmFI GGGAC 4 cut(s) 365, 743, 1093, 1343
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 3 cut(s) 345, 692, 1442
Bso31I GGTCTC 1 cut(s) 758
BsoBI CYCGRG 1 cut(s) 1417
Bsp119I TTCGAA 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 307
Bsp13I TCCGGA 1 cut(s) 1087
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 4 cut(s) 658, 729, 741, 1200
Bsp19I CCATGG 2 cut(s) 511, 879
BspANI GGCC 3 cut(s) 345, 692, 1442
BspCNI CTCAG 4 cut(s) 91, 92, 104, 1246
BspDI ATCGAT 2 cut(s) 668, 1365
BspEI TCCGGA 1 cut(s) 1087
BspFNI CGCG 1 cut(s) 756
BspLI GGNNCC 4 cut(s) 15, 452, 712, 1342
BspMI ACCTGC 2 cut(s) 449, 515
BspT104I TTCGAA 1 cut(s) 412
BspT107I GGYRCC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 266
BsrGI TGTACA 1 cut(s) 71
BsrI ACTGG 4 cut(s) 904, 916, 1008, 1331
BssECI CCNNGG 6 cut(s) 17, 511, 795, 879, 1344, 1418
BssMI GATC 4 cut(s) 658, 729, 741, 1200
BssNI GRCGYC 1 cut(s) 1214
BssT1I CCWWGG 4 cut(s) 17, 511, 795, 879
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 4 cut(s) 541, 769, 775, 979
Bst6I CTCTTC 1 cut(s) 1127
BstACI GRCGYC 1 cut(s) 1214
BstAUI TGTACA 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 274
BstBI TTCGAA 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 715, 1294
BstDEI CTNAG 5 cut(s) 79, 91, 99, 926, 1254
BstDSI CCRYGG 2 cut(s) 511, 879
BstF5I GGATG 6 cut(s) 86, 207, 294, 390, 889, 1443
BstFNI CGCG 1 cut(s) 756
BstKTI GATC 4 cut(s) 661, 732, 744, 1203
BstMAI GTCTC 3 cut(s) 434, 758, 951
BstMBI GATC 4 cut(s) 658, 729, 741, 1200
BstMWI GCNNNNNNNGC 5 cut(s) 28, 714, 1091, 1259, 1268
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 484
BstUI CGCG 1 cut(s) 756
BstV1I GCAGC 2 cut(s) 1168, 1336
BstV2I GAAGAC 2 cut(s) 655, 684
Bsu15I ATCGAT 2 cut(s) 668, 1365
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 3 cut(s) 345, 692, 1442
BsuTUI ATCGAT 2 cut(s) 668, 1365
BtgI CCRYGG 2 cut(s) 511, 879
BtsCI GGATG 6 cut(s) 86, 207, 294, 390, 889, 1443
BtsIMutI CAGTG 1 cut(s) 568
BveI ACCTGC 2 cut(s) 449, 515
Cac8I GCNNGC 2 cut(s) 715, 1294
CaiI CAGNNNCTG 1 cut(s) 98
Cfr13I GGNCC 5 cut(s) 152, 451, 690, 1341, 1440
ClaI ATCGAT 2 cut(s) 668, 1365
CseI GACGC 4 cut(s) 745, 1060, 1222, 1340
Csp6I GTAC 5 cut(s) 72, 595, 752, 1118, 1390
CviAII CATG 8 cut(s) 114, 281, 447, 512, 583, 880, 1219, 1393
CviQI GTAC 5 cut(s) 72, 595, 752, 1118, 1390
DdeI CTNAG 5 cut(s) 79, 91, 99, 926, 1254
DpnI GATC 4 cut(s) 660, 731, 743, 1202
DpnII GATC 4 cut(s) 658, 729, 741, 1200
DrdI GACNNNNNNGTC 1 cut(s) 617
DseDI GACNNNNNNGTC 1 cut(s) 617
Eam1104I CTCTTC 1 cut(s) 1127
EarI CTCTTC 1 cut(s) 1127
EciI GGCGGA 2 cut(s) 723, 1257
Eco130I CCWWGG 4 cut(s) 17, 511, 795, 879
Eco31I GGTCTC 1 cut(s) 758
Eco47I GGWCC 3 cut(s) 152, 451, 1341
Eco57I CTGAAG 2 cut(s) 396, 544
Eco88I CYCGRG 1 cut(s) 1417
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 4 cut(s) 17, 511, 795, 879
ErhI CCWWGG 4 cut(s) 17, 511, 795, 879
FaeI CATG 8 cut(s) 117, 284, 450, 515, 586, 883, 1222, 1396
FalI AAGNNNNNCTT 6 cut(s) 282, 314, 302, 334, 584, 616
FaqI GGGAC 4 cut(s) 365, 743, 1093, 1343
FatI CATG 8 cut(s) 113, 280, 446, 511, 582, 879, 1218, 1392
FauI CCCGC 1 cut(s) 529
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 4 cut(s) 706, 1157, 1263, 1350
FokI GGATG 6 cut(s) 73, 194, 281, 377, 896, 1430
Fsp4HI GCNGC 4 cut(s) 706, 1157, 1263, 1350
FspBI CTAG 4 cut(s) 5, 53, 470, 1104
GluI GCNGC 4 cut(s) 706, 1157, 1263, 1350
GsuI CTGGAG 1 cut(s) 933
HaeIII GGCC 3 cut(s) 345, 692, 1442
HapII CCGG 2 cut(s) 699, 1088
HgaI GACGC 4 cut(s) 745, 1060, 1222, 1340
Hin1I GRCGYC 1 cut(s) 1214
Hin1II CATG 8 cut(s) 117, 284, 450, 515, 586, 883, 1222, 1396
HincII GTYRAC 2 cut(s) 610, 1224
HindII GTYRAC 2 cut(s) 610, 1224
HindIII AAGCTT 2 cut(s) 848, 1066
HinfI GANTC 6 cut(s) 200, 230, 922, 959, 1046, 1396
HpaII CCGG 2 cut(s) 699, 1088
HphI GGTGA 5 cut(s) 134, 253, 688, 739, 967
Hpy166II GTNNAC 4 cut(s) 427, 481, 610, 1224
Hpy188I TCNGA 6 cut(s) 212, 1021, 1144, 1167, 1194, 1345
Hpy188III TCNNGA 6 cut(s) 98, 656, 1060, 1088, 1104, 1303
Hpy8I GTNNAC 4 cut(s) 427, 481, 610, 1224
Hpy99I CGWCG 1 cut(s) 1054
HpyAV CCTTC 4 cut(s) 50, 147, 1300, 1438
HpyCH4III ACNGT 4 cut(s) 541, 769, 775, 979
HpyCH4IV ACGT 3 cut(s) 273, 423, 1149
HpyCH4V TGCA 9 cut(s) 271, 286, 446, 626, 809, 1073, 1210, 1271, 1319
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 714, 1091, 1259, 1268
HpyF3I CTNAG 5 cut(s) 79, 91, 99, 926, 1254
HpySE526I ACGT 3 cut(s) 273, 423, 1149
Hsp92I GRCGYC 1 cut(s) 1214
Hsp92II CATG 8 cut(s) 117, 284, 450, 515, 586, 883, 1222, 1396
Kpn2I TCCGGA 1 cut(s) 1087
Kzo9I GATC 4 cut(s) 658, 729, 741, 1200
LmnI GCTCC 5 cut(s) 100, 138, 710, 1012, 1090
Lsp1109I GCAGC 2 cut(s) 1168, 1336
LweI GCATC 2 cut(s) 613, 1274
MaeI CTAG 4 cut(s) 5, 53, 470, 1104
MaeII ACGT 3 cut(s) 273, 423, 1149
MaeIII GTNAC 3 cut(s) 578, 769, 895
MalI GATC 4 cut(s) 660, 731, 743, 1202
MboI GATC 4 cut(s) 658, 729, 741, 1200
MboII GAAGA 8 cut(s) 41, 379, 401, 660, 689, 1144, 1257, 1423
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 4 cut(s) 159, 330, 489, 1161
MluI ACGCGT 1 cut(s) 754
MlyI GAGTC 3 cut(s) 916, 953, 1390
MmeI TCCRAC 2 cut(s) 529, 1122
MroI TCCGGA 1 cut(s) 1087
MroXI GAANNNNTTC 1 cut(s) 1382
MseI TTAA 3 cut(s) 122, 405, 1453
MslI CAYNNNNRTG 2 cut(s) 561, 980
MspI CCGG 2 cut(s) 699, 1088
MspR9I CCNGG 1 cut(s) 455
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 1 cut(s) 455
MvnI CGCG 1 cut(s) 756
MwoI GCNNNNNNNGC 5 cut(s) 28, 714, 1091, 1259, 1268
NcoI CCATGG 2 cut(s) 511, 879
NdeII GATC 4 cut(s) 658, 729, 741, 1200
NlaIII CATG 8 cut(s) 117, 284, 450, 515, 586, 883, 1222, 1396
NlaIV GGNNCC 4 cut(s) 15, 452, 712, 1342
NspV TTCGAA 1 cut(s) 412
OliI CACNNNNGTG 1 cut(s) 561
PaqCI CACCTGC 2 cut(s) 449, 515
PctI GAATGC 1 cut(s) 811
PdmI GAANNNNTTC 1 cut(s) 1382
PfeI GAWTC 3 cut(s) 200, 230, 1046
PflFI GACNNNGTC 1 cut(s) 1148
PkrI GCNGC 4 cut(s) 707, 1158, 1264, 1351
PleI GAGTC 3 cut(s) 916, 953, 1390
PpsI GAGTC 3 cut(s) 916, 953, 1390
Ppu21I YACGTR 1 cut(s) 274
PsiI TTATAA 1 cut(s) 788
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 4 cut(s) 15, 452, 712, 1342
PspPI GGNCC 5 cut(s) 152, 451, 690, 1341, 1440
PstNI CAGNNNCTG 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 1148
RsaI GTAC 5 cut(s) 73, 596, 753, 1119, 1391
RsaNI GTAC 5 cut(s) 72, 595, 752, 1118, 1390
RseI CAYNNNNRTG 2 cut(s) 561, 980
SaqAI TTAA 3 cut(s) 122, 405, 1453
SatI GCNGC 4 cut(s) 706, 1157, 1263, 1350
Sau3AI GATC 4 cut(s) 658, 729, 741, 1200
Sau96I GGNCC 5 cut(s) 152, 451, 690, 1341, 1440
ScaI AGTACT 1 cut(s) 1119
SchI GAGTC 3 cut(s) 916, 953, 1390
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 1 cut(s) 307
SfaNI GCATC 2 cut(s) 613, 1274
SfcI CTRYAG 1 cut(s) 484
SfuI TTCGAA 1 cut(s) 412
SinI GGWCC 3 cut(s) 152, 451, 1341
SmiMI CAYNNNNRTG 2 cut(s) 561, 980
SmlI CTYRAG 1 cut(s) 1113
SmoI CTYRAG 1 cut(s) 1113
Sse9I AATT 4 cut(s) 159, 330, 489, 1161
SspMI CTAG 4 cut(s) 5, 53, 470, 1104
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 4 cut(s) 17, 511, 795, 879
TaaI ACNGT 4 cut(s) 541, 769, 775, 979
TaiI ACGT 3 cut(s) 276, 426, 1152
TaqI TCGA 9 cut(s) 396, 412, 621, 661, 668, 1049, 1203, 1365, 1386
TaqII GACCGA 1 cut(s) 140
TasI AATT 4 cut(s) 159, 330, 489, 1161
TatI WGTACW 3 cut(s) 71, 1117, 1389
TauI GCSGC 2 cut(s) 708, 1265
TfiI GAWTC 3 cut(s) 200, 230, 1046
Tru1I TTAA 3 cut(s) 122, 405, 1453
Tru9I TTAA 3 cut(s) 122, 405, 1453
TscAI CASTG 1 cut(s) 568
TseI GCWGC 2 cut(s) 1156, 1349
TspDTI ATGAA 6 cut(s) 75, 102, 341, 379, 856, 998
TspGWI ACGGA 2 cut(s) 181, 209
TspRI CASTG 1 cut(s) 568
Tth111I GACNNNGTC 1 cut(s) 1148
VpaK11BI GGWCC 3 cut(s) 152, 451, 1341
XapI RAATTY 1 cut(s) 489
XbaI TCTAGA 1 cut(s) 1103
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 426
XmnI GAANNNNTTC 1 cut(s) 1382
XspI CTAG 4 cut(s) 5, 53, 470, 1104
ZrmI AGTACT 1 cut(s) 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.