Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005954

Physical Location & Seq

Genomic Coordinates Forward (+)

12858500 .. 12859926

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29850

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGCAAAGTCCTACAGAATTTCCCGCCGGTGTTGGAGGACACTTCAGTGGCGGTGGATATGGCAACATGATGAGAAAGTACGGCTTGTCAATTGACAACATAATCGATGCACAAATAGTTGATGTGCATGGAAGACTTCTTGATCGAAAATCGATGGGAGAAGACCTCTTTTGGGCCATCACCGGAGGCGGAGGAGCCAGCTTTGGAGTGGTGATCGGCTACAAGATCAACCTTGTACGCGTCCCAGAGACCGTTACTGTTTTCAGGGTTATAAGAATCTTGGAACAGAACGCAACTGACGGAAAGTTCTATAGTACATACCAGCTTACCATGGATGTTGTCAGTGTAACTGGCTCTCAAACTGGAGAAAAGACTCTAAGAGCTACATTCCTGGCCTTGTTTCAAGACTACTCTCCGTGCACCACTACAATTATGAGCAATGGCTACGGAAGGCAAGCCACGGTTGCAGTGTTTTTGAATCACGTGATGAACAAGAGTTTCCCTGAACTGGGTTTGGAGCAATCCGATTGCCAAGAAATGATTTGGGTTGAATCGACGCTTTTCTGGACAGGCTTTCCAAACGGGACAGCTCCGGAGGCTTTGCTTTCTAGGGTTCCTCAAGTACTTATCCACTTCAAGAGGAAGTCGGACTACGTCAAGCAGCCAATTCCGAAAGCTGGTTTGAAGTGGATTATTCAGAAAATGATCGAGTTGCAAATGCCCATGTTGACTTTCAATCCCTACGGCGGAAGAATGGCTGAGATAGCGGCATCTGCAAAACCTTTTCCACATAGAGCTGGCAATCTCTGGAAGGTTCAGTATGCAACAAACTGGGACGCTTCTGGGTCCGAGGCTGCGGAGAAATACGTCGATTTGACGAGGAAGTTGTTCGAGTACATTACTCCTTTCGTTTCCAAGAACCAGAGGGAAGCCTTCTTCAGCTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

317

Amino Acids

35.43

Weight (kDa)

8.37

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30700
fragaria_vesca	FvH4_3g11300 FvH4_3g11330
malus_domestica	MD05G1266000.v1.1 MD05G1266200.v1.1 MD05G1266400.v1.1 MD05G1266900.v1.1
prunus_persica	Prupe.1G171200_v2.0.a1 Prupe.4G099500_v2.0.a1 Prupe.7G051400_v2.0.a1
pyrus_communis	pycom05g25010 pycom05g25020
rosa_chinensis	RchiOBHm_Chr5g0018191 RchiOBHm_Chr5g0018231 RchiOBHm_Chr5g0018281
rosa_laevigata	RLG00000012618 RLG00000032345 RLG00000032346 RLG00000032347
rosa_multiflora	Rmu_sc0008158.1_g000003 Rmu_sc0012569.1_g000002 Rmu_sc0013020.1_g000006 Rmu_sc0018521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059470
rosa_rugosa	Rorug05G0041100
rosa_wichuraiana	Rw5G011710 Rw5G011720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AccII	CGCG	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	595
AciI	CCGC	6 cut(s)	27, 54, 192, 750, 770, 860
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	2 cut(s)	31, 925
AcvI	CACGTG	1 cut(s)	487
AfaI	GTAC	5 cut(s)	83, 240, 319, 627, 899
AfiI	CCNNNNNNNGG	5 cut(s)	175, 511, 512, 680, 749
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	6 cut(s)	407, 481, 554, 640, 688, 739
AjnI	CCWGG	1 cut(s)	393
AleI	CACNNNNGTG	1 cut(s)	48
AluBI	AGCT	7 cut(s)	204, 328, 386, 593, 680, 800, 945
AluI	AGCT	7 cut(s)	204, 328, 386, 593, 680, 800, 945
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	245
Alw44I	GTGCAC	1 cut(s)	421
Aor13HI	TCCGGA	1 cut(s)	595
AoxI	GGCC	2 cut(s)	177, 396
ApaLI	GTGCAC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	664, 857
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	890
AspS9I	GGNCC	2 cut(s)	177, 849
AsuHPI	GGTGA	2 cut(s)	175, 226
AvaII	GGWCC	1 cut(s)	849
BaeGI	GKGCMC	1 cut(s)	425
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbrPI	CACGTG	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	142, 171
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	676, 844
BccI	CCATC	2 cut(s)	151, 188
BceAI	ACGGC	2 cut(s)	100, 763
BciT130I	CCWGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	612
BfmI	CTRYAG	2 cut(s)	15, 313
BisI	GCNGC	3 cut(s)	665, 771, 858
BlsI	GCNGC	3 cut(s)	666, 772, 859
BmcAI	AGTACT	1 cut(s)	627
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	849
BmgT120I	GGNCC	2 cut(s)	177, 849
BmiI	GGNNCC	3 cut(s)	199, 618, 850
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	2 cut(s)	521, 844
BmsI	GCATC	2 cut(s)	100, 782
BmuI	ACTGGG	2 cut(s)	521, 844
BpiI	GAAGAC	2 cut(s)	142, 171
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	606
Bsa29I	ATCGAT	2 cut(s)	108, 155
BsaAI	YACGTR	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	333, 462, 852
BsaWI	WCCGGW	2 cut(s)	185, 595
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 511, 512, 680, 749
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	4 cut(s)	358, 370, 516, 839
Bse3DI	GCAATG	1 cut(s)	448
BseAI	TCCGGA	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	395
BseCI	ATCGAT	2 cut(s)	108, 155
BseDI	CCNNGG	3 cut(s)	333, 462, 852
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	5 cut(s)	175, 511, 512, 680, 749
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	4 cut(s)	358, 370, 516, 839
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	425
BseXI	GCAGC	2 cut(s)	676, 844
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	179, 398
BshVI	ATCGAT	2 cut(s)	108, 155
BsiHKAI	GWGCWC	1 cut(s)	425
BsiSI	CCGG	3 cut(s)	30, 186, 596
BslFI	GGGAC	3 cut(s)	230, 601, 851
BslI	CCNNNNNNNGG	5 cut(s)	175, 511, 512, 680, 749
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	3 cut(s)	230, 601, 851
BsnI	GGCC	2 cut(s)	179, 398
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp13I	TCCGGA	1 cut(s)	595
Bsp143I	GATC	4 cut(s)	145, 216, 228, 708
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	6 cut(s)	27, 54, 192, 750, 770, 860
BspANI	GGCC	2 cut(s)	179, 398
BspCNI	CTCAG	1 cut(s)	754
BspDI	ATCGAT	2 cut(s)	108, 155
BspEI	TCCGGA	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	199, 618, 850
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	4 cut(s)	358, 370, 516, 839
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	3 cut(s)	333, 462, 852
BssMI	GATC	4 cut(s)	145, 216, 228, 708
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	3 cut(s)	256, 262, 466
BstBAI	YACGTR	1 cut(s)	487
BstC8I	GCNNGC	3 cut(s)	202, 459, 802
BstDEI	CTNAG	2 cut(s)	380, 762
BstDSI	CCRYGG	2 cut(s)	333, 462
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	4 cut(s)	148, 219, 231, 711
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	4 cut(s)	145, 216, 228, 708
BstMWI	GCNNNNNNNGC	4 cut(s)	467, 599, 767, 776
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	15, 313
BstSLI	GKGCMC	1 cut(s)	425
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	676, 844
BstV2I	GAAGAC	2 cut(s)	142, 171
Bsu15I	ATCGAT	2 cut(s)	108, 155
BsuRI	GGCC	2 cut(s)	179, 398
BsuTUI	ATCGAT	2 cut(s)	108, 155
BtgI	CCRYGG	2 cut(s)	333, 462
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	3 cut(s)	55, 352, 477
Cac8I	GCNNGC	3 cut(s)	202, 459, 802
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	177, 849
ClaI	ATCGAT	2 cut(s)	108, 155
CseI	GACGC	3 cut(s)	232, 568, 848
Csp6I	GTAC	5 cut(s)	82, 239, 318, 626, 898
CviAII	CATG	4 cut(s)	70, 131, 334, 727
CviQI	GTAC	5 cut(s)	82, 239, 318, 626, 898
DdeI	CTNAG	2 cut(s)	380, 762
DpnI	GATC	4 cut(s)	147, 218, 230, 710
DpnII	GATC	4 cut(s)	145, 216, 228, 708
EciI	GGCGGA	2 cut(s)	207, 765
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	849
Eco57I	CTGAAG	2 cut(s)	31, 925
Eco72I	CACGTG	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	4 cut(s)	73, 134, 337, 730
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	3 cut(s)	230, 601, 851
FatI	CATG	4 cut(s)	69, 130, 333, 726
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	3 cut(s)	665, 771, 858
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	3 cut(s)	665, 771, 858
FspBI	CTAG	1 cut(s)	612
GluI	GCNGC	3 cut(s)	665, 771, 858
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	179, 398
HapII	CCGG	3 cut(s)	30, 186, 596
HgaI	GACGC	3 cut(s)	232, 568, 848
Hin1II	CATG	4 cut(s)	73, 134, 337, 730
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	4 cut(s)	279, 376, 481, 554
HpaII	CCGG	3 cut(s)	30, 186, 596
HphI	GGTGA	2 cut(s)	175, 226
Hpy166II	GTNNAC	2 cut(s)	423, 732
Hpy188I	TCNGA	5 cut(s)	529, 652, 675, 702, 853
Hpy188III	TCNNGA	6 cut(s)	143, 407, 568, 596, 640, 811
Hpy8I	GTNNAC	2 cut(s)	423, 732
Hpy99I	CGWCG	2 cut(s)	562, 875
HpyAV	CCTTC	3 cut(s)	447, 808, 946
HpyCH4III	ACNGT	3 cut(s)	256, 262, 466
HpyCH4IV	ACGT	3 cut(s)	486, 657, 870
HpyCH4V	TGCA	7 cut(s)	113, 130, 423, 470, 718, 779, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	467, 599, 767, 776
HpyF3I	CTNAG	2 cut(s)	380, 762
HpySE526I	ACGT	3 cut(s)	486, 657, 870
Hsp92II	CATG	4 cut(s)	73, 134, 337, 730
Kpn2I	TCCGGA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	145, 216, 228, 708
LmnI	GCTCC	4 cut(s)	4, 197, 520, 598
Lsp1109I	GCAGC	2 cut(s)	676, 844
LweI	GCATC	2 cut(s)	100, 782
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	3 cut(s)	486, 657, 870
MaeIII	GTNAC	2 cut(s)	256, 349
MalI	GATC	4 cut(s)	147, 218, 230, 710
MboI	GATC	4 cut(s)	145, 216, 228, 708
MboII	GAAGA	4 cut(s)	147, 176, 765, 931
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	4 cut(s)	20, 93, 432, 669
MluI	ACGCGT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	2 cut(s)	16, 630
MroI	TCCGGA	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	890
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	3 cut(s)	30, 186, 596
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	4 cut(s)	467, 599, 767, 776
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	4 cut(s)	145, 216, 228, 708
NlaIII	CATG	4 cut(s)	73, 134, 337, 730
NlaIV	GGNNCC	3 cut(s)	199, 618, 850
OliI	CACNNNNGTG	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	3 cut(s)	279, 481, 554
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	3 cut(s)	666, 772, 859
PleI	GAGTC	1 cut(s)	370
PmaCI	CACGTG	1 cut(s)	487
PmlI	CACGTG	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	487
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	393
PspCI	CACGTG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	3 cut(s)	199, 618, 850
PspPI	GGNCC	2 cut(s)	177, 849
PsyI	GACNNNGTC	1 cut(s)	656
RsaI	GTAC	5 cut(s)	83, 240, 319, 627, 899
RsaNI	GTAC	5 cut(s)	82, 239, 318, 626, 898
RseI	CAYNNNNRTG	1 cut(s)	48
SatI	GCNGC	3 cut(s)	665, 771, 858
Sau3AI	GATC	4 cut(s)	145, 216, 228, 708
Sau96I	GGNCC	2 cut(s)	177, 849
ScaI	AGTACT	1 cut(s)	627
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	425
SfaNI	GCATC	2 cut(s)	100, 782
SfcI	CTRYAG	2 cut(s)	15, 313
SgrAI	CRCCGGYG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	4 cut(s)	20, 93, 432, 669
SsiI	CCGC	6 cut(s)	27, 54, 192, 750, 770, 860
SspMI	CTAG	1 cut(s)	612
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	256, 262, 466
TaiI	ACGT	3 cut(s)	489, 660, 873
TaqI	TCGA	7 cut(s)	108, 148, 155, 557, 711, 873, 894
TasI	AATT	4 cut(s)	20, 93, 432, 669
TatI	WGTACW	3 cut(s)	317, 625, 897
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	3 cut(s)	279, 481, 554
TscAI	CASTG	3 cut(s)	55, 352, 477
TseI	GCWGC	2 cut(s)	664, 857
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	3 cut(s)	318, 408, 465
TspRI	CASTG	3 cut(s)	55, 352, 477
Tth111I	GACNNNGTC	1 cut(s)	656
VneI	GTGCAC	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	849
XapI	RAATTY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	1 cut(s)	612
ZrmI	AGTACT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.