Prupe.1G171200_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
14254522 .. 14256328
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G171200.1

Sequence Viewer

Length: 1629 bp
ATGGGAATTCTAAGCCTTCCACAGCTCTTATTGTTTCAATTAATTCTTAATTTATTATTATCATTCAGTGTTTCTTGGGCAGGTTCAGATTCAGCTCCAGATCAAGACTTTGTTCAATGCCTTCTAAGCCATTCCCAGCCTTCTCACCCCATCTCTGAAGCAATTTACATTCCCAACAATGCTTCTTACTCATCTGTTTTGCGATCTTACATCCGAAACCTTAGATTCAACACATCTTCAACCCCAAAACCTTTCCTTATTATCACTCCTCTGCATGAATCTCATGTGCAGCAAGCCATTGTTTGTGCTCAAAAGCAAAACTTGCTGATGAAAATTAGAAGCGGAGGCCATGATTATGAGGGTGTATCTTATGTGTCCGACGTTCCGTTCTTCCTCCTCGACATGTTTAATCTTCGATCCATCGACATAGACATAAATTCCGAGACTGCATGGGTCCAGGCTGGGGCAACTCTTGGTGAACTTTTCTACAGAATTTATGAGAAAAGCAAAATCCATGGCTTTCCTGCCGGTGTTTGTCCTACAGTTGGTGTTGGAGGCCACTTTAGTGGAGCTGGATATGGCAATTTGATGAGGAAGTACGGCCTATCCGTGGACAATATAATTGATGCGCAACTGATGGATGTGCACGGGAGACTTCTCGACCGAAAATCGATGGGAGAAGATCTGTTTTGGGCCATCACAGGAGGCGGCGGAGCCAGCTTTGGAGTTGTCATCGCTTACAAAATCAATCTTGTACGTGTTCCACAAACAGTTACTGTTTTCAGGGTCGAAAGGACCTTGGAACAGAATGCAACAGACATTGTGTACCGTTGGCAATATGTTGCACCTAAGCTGGATACTGACTTGTTCATCAGGCTTACCATGGAAGTTGTAAATATTACTGGCGGTCCATTAAGTACTGGTGGAGAAAACTATAAGACTATAAGAGCTTCATTCATTGGATTCTTTCTTGGAAACTCTGAAAGACTTCTCTCTGTTATGGAAACTGGCTTCCCTGAATTGAGTTTGAAGCAATCAGATTGCATTGAAATGAGCTGGGTTGAATCTGTGCTTTTCTGGACAAGCTTCCCCATTGGAACAGAGCCTGAAGCTTTACTTTCTAGAAAGCCTCAAGTACTTGTCCACCTCAAGAGGAAATCAGACTACGTCAAAACCCCAATTCCGAAAATTGGTTTGATGTGGATTTGGCAGAAAATGATCGAATTTGAGGTACCGATCATGAGCTTTAACCCCTACGGTGGAAAAATGAGTGAGATTCCAGAATCCGCAACTCCTTGTCCACATAGAGCTGGGAATCTTTGGAAGATTCAGTATGCAACAAATTGGGAAGTATCAGGGGCTGAGGCCTCAGATTACCATCTAAATTTGACAAAAAAGCTTTACTTCTACATGACTCCTTTTGTTTCCATGAATCCAAGGGAAGCCTATTTCAACTATAAAGATCTTGACCTGGGGATCAACAACAATGGCAAGGCAAGCTATTTTGAGGGAAAAGCTTATGGGATTAGGTACTTCAAGGATAATTTCGACCGATTGGTGCGTATTAAGACGGAGGTTGATCCTGGTAACTTCTTTAGGAATGAGCAAAGCATCCCAACTCTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

543

Amino Acids

61.11

Weight (kDa)

6.61

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 630
Acc36I ACCTGC 1 cut(s) 71
Acc65I GGTACC 1 cut(s) 1231
AccB1I GGYRCC 1 cut(s) 1231
AciI CCGC 5 cut(s) 342, 708, 711, 906, 1287
AclWI GGATC 3 cut(s) 411, 1484, 1574
AcsI RAATTY 5 cut(s) 6, 436, 492, 1223, 1384
AcuI CTGAAG 2 cut(s) 177, 1128
AfaI GTAC 7 cut(s) 599, 756, 827, 919, 1137, 1233, 1532
AfiI CCNNNNNNNGG 5 cut(s) 463, 545, 610, 1190, 1259
AflIII ACRYGT 2 cut(s) 402, 757
AgsI TTSAA 9 cut(s) 38, 116, 229, 240, 1030, 1049, 1064, 1453, 1537
AjnI CCWGG 3 cut(s) 456, 1470, 1582
AleI CACNNNNGTG 1 cut(s) 564
Alw21I GWGCWC 2 cut(s) 310, 648
Alw26I GTCTC 2 cut(s) 437, 646
Alw44I GTGCAC 1 cut(s) 644
AlwI GGATC 3 cut(s) 411, 1484, 1574
AlwNI CAGNNNCTG 3 cut(s) 776, 1106, 1361
AoxI GGCC 5 cut(s) 346, 556, 601, 693, 1365
ApaLI GTGCAC 1 cut(s) 644
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 5 cut(s) 6, 436, 492, 1223, 1384
AseI ATTAAT 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 987
Asp718I GGTACC 1 cut(s) 1231
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 4 cut(s) 454, 693, 795, 908
AsuHPI GGTGA 2 cut(s) 137, 488
AvaII GGWCC 3 cut(s) 454, 795, 908
BaeGI GKGCMC 1 cut(s) 648
BanI GGYRCC 1 cut(s) 1231
Bbv12I GWGCWC 2 cut(s) 310, 648
BbvCI CCTCAGC 1 cut(s) 1362
BbvI GCAGC 1 cut(s) 301
BccI CCATC 6 cut(s) 158, 428, 631, 667, 704, 1386
BceAI ACGGC 1 cut(s) 616
BciT130I CCWGG 3 cut(s) 458, 1472, 1584
BciVI GTATCC 1 cut(s) 850
BcoDI GTCTC 2 cut(s) 437, 646
BfaI CTAG 1 cut(s) 1122
BfmI CTRYAG 2 cut(s) 487, 540
BfuAI ACCTGC 1 cut(s) 71
BfuI GTATCC 1 cut(s) 850
BglII AGATCT 2 cut(s) 682, 1462
BisI GCNGC 2 cut(s) 290, 709
BlsI GCNGC 2 cut(s) 291, 710
BmcAI AGTACT 2 cut(s) 919, 1137
Bme1390I CCNGG 3 cut(s) 458, 1472, 1584
Bme18I GGWCC 3 cut(s) 454, 795, 908
BmgT120I GGNCC 4 cut(s) 454, 693, 795, 908
BmiI GGNNCC 3 cut(s) 455, 715, 1233
BmrFI CCNGG 3 cut(s) 458, 1472, 1584
BmsI GCATC 2 cut(s) 616, 1620
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 2 cut(s) 849, 1362
BpuEI CTTGAG 2 cut(s) 1116, 1133
Bsa29I ATCGAT 1 cut(s) 671
BsaAI YACGTR 1 cut(s) 758
BsaBI GATNNNNATC 1 cut(s) 1377
BsaJI CCNNGG 6 cut(s) 514, 609, 798, 882, 1436, 1471
Bsc4I CCNNNNNNNGG 5 cut(s) 463, 545, 610, 1190, 1259
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 3 cut(s) 907, 925, 1012
Bse8I GATNNNNATC 1 cut(s) 1377
BseBI CCWGG 3 cut(s) 458, 1472, 1584
BseCI ATCGAT 1 cut(s) 671
BseDI CCNNGG 6 cut(s) 514, 609, 798, 882, 1436, 1471
BseGI GGATG 3 cut(s) 210, 646, 1611
BseJI GATNNNNATC 1 cut(s) 1377
BseLI CCNNNNNNNGG 5 cut(s) 463, 545, 610, 1190, 1259
BseMII CTCAG 2 cut(s) 1353, 1383
BseNI ACTGG 3 cut(s) 907, 925, 1012
BseRI GAGGAG 2 cut(s) 258, 386
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 1 cut(s) 301
BseYI CCCAGC 4 cut(s) 135, 461, 1056, 1310
BsgI GTGCAG 1 cut(s) 308
Bsh1285I CGRYCG 2 cut(s) 664, 1552
BshFI GGCC 5 cut(s) 348, 558, 603, 695, 1367
BshNI GGYRCC 1 cut(s) 1231
BshVI ATCGAT 1 cut(s) 671
BsiEI CGRYCG 2 cut(s) 664, 1552
BsiHKAI GWGCWC 2 cut(s) 310, 648
BsiSI CCGG 1 cut(s) 528
BslI CCNNNNNNNGG 5 cut(s) 463, 545, 610, 1190, 1259
BsmAI GTCTC 2 cut(s) 437, 646
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 5 cut(s) 348, 558, 603, 695, 1367
Bsp1286I GDGCHC 2 cut(s) 310, 648
Bsp143I GATC 9 cut(s) 100, 203, 416, 682, 1218, 1236, 1462, 1476, 1579
Bsp19I CCATGG 2 cut(s) 514, 882
BspACI CCGC 5 cut(s) 342, 708, 711, 906, 1287
BspANI GGCC 5 cut(s) 348, 558, 603, 695, 1367
BspCNI CTCAG 2 cut(s) 1354, 1382
BspDI ATCGAT 1 cut(s) 671
BspHI TCATGA 1 cut(s) 1239
BspLI GGNNCC 3 cut(s) 455, 715, 1233
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 3 cut(s) 411, 1484, 1574
BspT107I GGYRCC 1 cut(s) 1231
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 3 cut(s) 907, 925, 1012
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 6 cut(s) 514, 609, 798, 882, 1436, 1471
BssMI GATC 9 cut(s) 100, 203, 416, 682, 1218, 1236, 1462, 1476, 1579
BssT1I CCWWGG 4 cut(s) 514, 798, 882, 1436
Bst2UI CCWGG 3 cut(s) 458, 1472, 1584
Bst4CI ACNGT 5 cut(s) 544, 772, 778, 830, 1259
Bst6I CTCTTC 1 cut(s) 1626
BstAPI GCANNNNNTGC 1 cut(s) 322
BstBAI YACGTR 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 294, 718, 1498
BstDEI CTNAG 6 cut(s) 11, 125, 221, 849, 1362, 1369
BstDSI CCRYGG 3 cut(s) 514, 609, 882
BstF5I GGATG 3 cut(s) 210, 646, 1611
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 9 cut(s) 103, 206, 419, 685, 1221, 1239, 1465, 1479, 1582
BstMAI GTCTC 2 cut(s) 437, 646
BstMBI GATC 9 cut(s) 100, 203, 416, 682, 1218, 1236, 1462, 1476, 1579
BstMCI CGRYCG 2 cut(s) 664, 1552
BstMWI GCNNNNNNNGC 4 cut(s) 126, 322, 717, 1497
BstNI CCWGG 3 cut(s) 458, 1472, 1584
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 3 cut(s) 456, 1470, 1582
BstSFI CTRYAG 2 cut(s) 487, 540
BstSLI GKGCMC 1 cut(s) 648
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 2 cut(s) 682, 1462
BstXI CCANNNNNNTGG 1 cut(s) 566
BstYI RGATCY 2 cut(s) 682, 1462
Bsu15I ATCGAT 1 cut(s) 671
BsuI GTATCC 1 cut(s) 850
BsuRI GGCC 5 cut(s) 348, 558, 603, 695, 1367
BsuTUI ATCGAT 1 cut(s) 671
BtgI CCRYGG 3 cut(s) 514, 609, 882
BtgZI GCGATG 1 cut(s) 718
BtsCI GGATG 3 cut(s) 210, 646, 1611
BtsIMutI CAGTG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 3 cut(s) 294, 718, 1498
CaiI CAGNNNCTG 3 cut(s) 776, 1106, 1361
CciI TCATGA 1 cut(s) 1239
CfoI GCGC 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 4 cut(s) 454, 693, 795, 908
ClaI ATCGAT 1 cut(s) 671
Csp6I GTAC 7 cut(s) 598, 755, 826, 918, 1136, 1232, 1531
CviQI GTAC 7 cut(s) 598, 755, 826, 918, 1136, 1232, 1531
DdeI CTNAG 6 cut(s) 11, 125, 221, 849, 1362, 1369
DpnI GATC 9 cut(s) 102, 205, 418, 684, 1220, 1238, 1464, 1478, 1581
DpnII GATC 9 cut(s) 100, 203, 416, 682, 1218, 1236, 1462, 1476, 1579
Eam1104I CTCTTC 1 cut(s) 1626
EarI CTCTTC 1 cut(s) 1626
EciI GGCGGA 1 cut(s) 726
Eco130I CCWWGG 4 cut(s) 514, 798, 882, 1436
Eco147I AGGCCT 1 cut(s) 1367
Eco47I GGWCC 3 cut(s) 454, 795, 908
Eco57I CTGAAG 2 cut(s) 177, 1128
EcoO109I RGGNCCY 1 cut(s) 795
EcoRI GAATTC 1 cut(s) 6
EcoRII CCWGG 3 cut(s) 456, 1470, 1582
EcoT14I CCWWGG 4 cut(s) 514, 798, 882, 1436
ErhI CCWWGG 4 cut(s) 514, 798, 882, 1436
FalI AAGNNNNNCTT 6 cut(s) 305, 337, 1101, 1133, 1388, 1420
Fnu4HI GCNGC 2 cut(s) 290, 709
FokI GGATG 3 cut(s) 197, 653, 1598
Fsp4HI GCNGC 2 cut(s) 290, 709
FspBI CTAG 1 cut(s) 1122
FspI TGCGCA 1 cut(s) 630
GlaI GCGC 1 cut(s) 630
GluI GCNGC 2 cut(s) 290, 709
GsaI CCCAGC 4 cut(s) 139, 465, 1060, 1314
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 5 cut(s) 348, 558, 603, 695, 1367
HapII CCGG 1 cut(s) 528
HhaI GCGC 1 cut(s) 631
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HindIII AAGCTT 4 cut(s) 1084, 1110, 1397, 1515
HpaII CCGG 1 cut(s) 528
HphI GGTGA 2 cut(s) 137, 488
Hpy166II GTNNAC 6 cut(s) 479, 613, 646, 826, 1144, 1301
Hpy188III TCNNGA 9 cut(s) 98, 104, 659, 1078, 1122, 1150, 1240, 1280, 1466
Hpy8I GTNNAC 6 cut(s) 479, 613, 646, 826, 1144, 1301
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 26, 131, 150
HpyCH4III ACNGT 5 cut(s) 544, 772, 778, 830, 1259
HpyCH4IV ACGT 3 cut(s) 381, 757, 1167
HpyCH4V TGCA 8 cut(s) 274, 289, 449, 646, 812, 845, 1044, 1337
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 322, 717, 1497
HpyF3I CTNAG 6 cut(s) 11, 125, 221, 849, 1362, 1369
HpySE526I ACGT 3 cut(s) 381, 757, 1167
HspAI GCGC 1 cut(s) 629
KpnI GGTACC 1 cut(s) 1235
Kzo9I GATC 9 cut(s) 100, 203, 416, 682, 1218, 1236, 1462, 1476, 1579
LmnI GCTCC 3 cut(s) 100, 569, 713
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 2 cut(s) 616, 1620
MaeI CTAG 1 cut(s) 1122
MaeII ACGT 3 cut(s) 381, 757, 1167
MaeIII GTNAC 2 cut(s) 772, 1586
MalI GATC 9 cut(s) 102, 205, 418, 684, 1220, 1238, 1464, 1478, 1581
MboI GATC 9 cut(s) 100, 203, 416, 682, 1218, 1236, 1462, 1476, 1579
MboII GAAGA 6 cut(s) 228, 382, 404, 692, 1336, 1613
MflI RGATCY 2 cut(s) 682, 1462
MhlI GDGCHC 2 cut(s) 310, 648
MlyI GAGTC 1 cut(s) 1408
MmeI TCCRAC 2 cut(s) 402, 532
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 6 cut(s) 41, 48, 408, 914, 1248, 1566
MslI CAYNNNNRTG 3 cut(s) 354, 564, 1049
MspI CCGG 1 cut(s) 528
MspR9I CCNGG 3 cut(s) 458, 1472, 1584
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 3 cut(s) 458, 1472, 1584
MwoI GCNNNNNNNGC 4 cut(s) 126, 322, 717, 1497
NcoI CCATGG 2 cut(s) 514, 882
NdeII GATC 9 cut(s) 100, 203, 416, 682, 1218, 1236, 1462, 1476, 1579
NlaIV GGNNCC 3 cut(s) 455, 715, 1233
NsbI TGCGCA 1 cut(s) 630
NspI RCATGY 1 cut(s) 406
OliI CACNNNNGTG 1 cut(s) 564
PagI TCATGA 1 cut(s) 1239
PceI AGGCCT 1 cut(s) 1367
PciI ACATGT 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PctI GAATGC 1 cut(s) 814
PdmI GAANNNNTTC 1 cut(s) 987
PflFI GACNNNGTC 1 cut(s) 1166
PkrI GCNGC 2 cut(s) 291, 710
PleI GAGTC 1 cut(s) 1408
PpsI GAGTC 1 cut(s) 1408
Ppu21I YACGTR 1 cut(s) 758
PpuMI RGGWCCY 1 cut(s) 795
PscI ACATGT 1 cut(s) 402
PshBI ATTAAT 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 795
Psp6I CCWGG 3 cut(s) 456, 1470, 1582
PspFI CCCAGC 4 cut(s) 135, 461, 1056, 1310
PspGI CCWGG 3 cut(s) 456, 1470, 1582
PspN4I GGNNCC 3 cut(s) 455, 715, 1233
PspPI GGNCC 4 cut(s) 454, 693, 795, 908
PspPPI RGGWCCY 1 cut(s) 795
PstNI CAGNNNCTG 3 cut(s) 776, 1106, 1361
PsuI RGATCY 2 cut(s) 682, 1462
PsyI GACNNNGTC 1 cut(s) 1166
RsaI GTAC 7 cut(s) 599, 756, 827, 919, 1137, 1233, 1532
RsaNI GTAC 7 cut(s) 598, 755, 826, 918, 1136, 1232, 1531
RseI CAYNNNNRTG 3 cut(s) 354, 564, 1049
SaqAI TTAA 6 cut(s) 41, 48, 408, 914, 1248, 1566
SatI GCNGC 2 cut(s) 290, 709
Sau3AI GATC 9 cut(s) 100, 203, 416, 682, 1218, 1236, 1462, 1476, 1579
Sau96I GGNCC 4 cut(s) 454, 693, 795, 908
ScaI AGTACT 2 cut(s) 919, 1137
SchI GAGTC 1 cut(s) 1408
ScrFI CCNGG 3 cut(s) 458, 1472, 1584
SduI GDGCHC 2 cut(s) 310, 648
SfaNI GCATC 2 cut(s) 616, 1620
SfcI CTRYAG 2 cut(s) 487, 540
SinI GGWCC 3 cut(s) 454, 795, 908
SmiMI CAYNNNNRTG 3 cut(s) 354, 564, 1049
SmlI CTYRAG 2 cut(s) 1131, 1148
SmoI CTYRAG 2 cut(s) 1131, 1148
SseBI AGGCCT 1 cut(s) 1367
SsiI CCGC 5 cut(s) 342, 708, 711, 906, 1287
SspI AATATT 1 cut(s) 898
SspMI CTAG 1 cut(s) 1122
StuI AGGCCT 1 cut(s) 1367
StyD4I CCNGG 3 cut(s) 456, 1470, 1582
StyI CCWWGG 4 cut(s) 514, 798, 882, 1436
TaaI ACNGT 5 cut(s) 544, 772, 778, 830, 1259
TaiI ACGT 3 cut(s) 384, 760, 1170
TaqI TCGA 8 cut(s) 399, 415, 423, 660, 671, 789, 1221, 1548
TaqII GACCGA 2 cut(s) 678, 1566
TatI WGTACW 2 cut(s) 917, 1135
TauI GCSGC 1 cut(s) 711
Tru1I TTAA 6 cut(s) 41, 48, 408, 914, 1248, 1566
Tru9I TTAA 6 cut(s) 41, 48, 408, 914, 1248, 1566
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 289
TspDTI ATGAA 6 cut(s) 291, 344, 859, 942, 946, 1445
TspGWI ACGGA 3 cut(s) 375, 598, 1586
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 1 cut(s) 1166
VneI GTGCAC 1 cut(s) 644
VpaK11BI GGWCC 3 cut(s) 454, 795, 908
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 5 cut(s) 6, 436, 492, 1223, 1384
XbaI TCTAGA 1 cut(s) 1121
XceI RCATGY 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 1 cut(s) 1122
ZrmI AGTACT 2 cut(s) 919, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.