pycom05g25020

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
26467166 .. 26468916
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g25020.2

Sequence Viewer

Length: 1632 bp
ATGGCAATTCCAAGGCTTCCCCACATCTTACAGCTTTCAGTTCTTGTGCTACTATCTATTTCATGGGCAGTTTCAGCTTCAGCTTCAGCTGATCATGAGACCTTTGTTGATTGCCTTCTAAACCATTCCCAACCCTCTCACCCAATTGCCCCAGCAATTCACACTTCCAACAATGCTTCCTACTCATCCATTTTGGAATCTTACATCCGAAACCTCCGATTCAACACATCTACAACCCGAAAACCCTTCCTCATCCTCACTGCATTGCATGAGTCCCACGTGCAAATATCCGTTGTTTGTGCCCAAATCCATAACTTCCAAATGAAGATTAGAAGTGGAGGCCATGATTTCGAGGGTTTATCATACGTGGCTGAATTTCCATTCTTCATCCTCGACATGTTTAATCTTCGATCCATCCACGTAGACATCAAATCCGAGACTGCATGGGTCCAGGCTGGGGCTACTCTTGGTGAACTTTACTATAGAATTGCTGAGAAAAGCAAAATCCATGGCTTTCCCGCTGGTGTTTGCCCTACAGTTGGTGTTGGAGGCCACTTCAGTGGCGGTGGATACGGTAATATGATGAGAAAGTACGGCTTGTCAGTTGACAACATAGTTGATGCACAACTTGTAAATGTGCACGGTAAACTTCTCGACCGAAAATCAATGGGAGAAGACCTTTTTTGGGCCATTACCGGAGGCGGAGGAGCCAGCTTTGGAGTTGTGATCGCGTACAAAATTAATCTTGTACGCGTTCCAGAAACAGTTACTGTTTTCAAGGTTCCGAGAACCCTGGAACAAAATGCAACGGACATTGTCTATCGTTGGCAATATATCGCGGATAAGCTTGACAATGACTTGTTCATCAGGCTTATCATGGATATTGTAAATGGTACTACTTCAAATAGTAGTGGAGAAAACACTAAGACTCTTAGAGCTTCATTTATTGCCATGTTTCTCGGAGACTCTGAGAGGCTTCTCTCAATCATGGACAAGAGCTTCCCTGAATTGGGTATGAAGCAATCTGATTGCTATGAAATGAGCTGGGCTCAATCTGTGCTTTTCTGGACGAGCTTCCCAACCGGGACAGCAACTGAAGCTTTGCTTTCAAGAACACCTCAAGTGCTTACACACTTCAAGAGGAAGTCAGACTATGTCAAAAAACCAATTCCAAAAGCTGGTTTGAAGTGGATTTTTCAGAAAATGATTGAGCTTGAGGCACCATTGTTGACCTTCAACCCCCACGGCGGGAAAATGAGTGAGATATCAGCATCGGCAACTCCATTTCCTCATAGAGCTGGGAATCTCTGGATGGTTCAGTATGCAACAAACTGGAACATACAAGGGACTGAGGCATCAGATCATTATATTGATCTGACAAGAAAGCTCTACATGTACATGACTCCCTTTGTTTCCAAGAATCCGAGGGAAGCCTTTTACAGCTACAAGGATCTTGACATTGGGACCAACCATAATGCTAATGGCATTGCAAGCTATTTGGAGGGGAGAGTTTTTGGCATTAAGTACTTCAGGCATAACTTTGATAGGTTGGTGAATGTGAAGACAAAGGTCGACCCTGCCAAAGAAATAAAAAAGAAGAAAGATATTGCTTACAAGGTTGCAATTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

544

Amino Acids

60.88

Weight (kDa)

9.04

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1219
AccB7I CCANNNNNTGG 1 cut(s) 1178
AccI GTMKAC 2 cut(s) 423, 1572
AccII CGCG 3 cut(s) 731, 753, 839
AciI CCGC 5 cut(s) 519, 564, 702, 839, 1248
AclWI GGATC 2 cut(s) 405, 1458
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 5 cut(s) 63, 69, 541, 1116, 1513
AcvI CACGTG 1 cut(s) 280
AfaI GTAC 6 cut(s) 593, 734, 750, 895, 1397, 1526
AfiI CCNNNNNNNGG 8 cut(s) 457, 539, 685, 1009, 1010, 1178, 1247, 1248
AflIII ACRYGT 3 cut(s) 396, 751, 1392
AgsI TTSAA 7 cut(s) 223, 778, 903, 1110, 1138, 1186, 1237
AjnI CCWGG 2 cut(s) 450, 792
AleI CACNNNNGTG 1 cut(s) 558
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 3 cut(s) 92, 431, 957
Alw44I GTGCAC 1 cut(s) 638
AlwI GGATC 2 cut(s) 405, 1458
AlwNI CAGNNNCTG 2 cut(s) 770, 1094
AoxI GGCC 3 cut(s) 340, 550, 687
ApaLI GTGCAC 1 cut(s) 638
ApoI RAATTY 1 cut(s) 374
AseI ATTAAT 1 cut(s) 741
AspS9I GGNCC 3 cut(s) 448, 687, 1464
AsuC2I CCSGG 1 cut(s) 1084
AsuHPI GGTGA 3 cut(s) 131, 482, 1564
AvaII GGWCC 2 cut(s) 448, 1464
BaeGI GKGCMC 2 cut(s) 304, 642
BanI GGYRCC 1 cut(s) 1219
BanII GRGCYC 1 cut(s) 1051
BbrPI CACGTG 1 cut(s) 280
BbsI GAAGAC 2 cut(s) 681, 1568
Bbv12I GWGCWC 1 cut(s) 642
BccI CCATC 2 cut(s) 422, 1306
BceAI ACGGC 2 cut(s) 610, 1261
BciT130I CCWGG 2 cut(s) 452, 794
BciVI GTATCC 1 cut(s) 563
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 1084
BcoDI GTCTC 3 cut(s) 92, 431, 957
BfmI CTRYAG 2 cut(s) 481, 534
BfuI GTATCC 1 cut(s) 563
BmcAI AGTACT 1 cut(s) 1526
Bme1390I CCNGG 3 cut(s) 452, 794, 1084
Bme18I GGWCC 2 cut(s) 448, 1464
BmgT120I GGNCC 3 cut(s) 448, 687, 1464
BmiI GGNNCC 5 cut(s) 449, 709, 783, 1221, 1465
BmrFI CCNGG 3 cut(s) 452, 794, 1084
BmsI GCATC 3 cut(s) 610, 1280, 1364
BoxI GACNNNNGTC 1 cut(s) 1568
BpiI GAAGAC 2 cut(s) 681, 1568
BplI GAGNNNNNCTC 2 cut(s) 1033, 1065
BpuEI CTTGAG 2 cut(s) 1104, 1235
BpuMI CCSGG 1 cut(s) 1084
BsaAI YACGTR 3 cut(s) 280, 367, 421
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 5 cut(s) 11, 508, 792, 1243, 1424
BsaWI WCCGGW 1 cut(s) 695
Bsc4I CCNNNNNNNGG 8 cut(s) 457, 539, 685, 1009, 1010, 1178, 1247, 1248
Bse1I ACTGG 1 cut(s) 1337
Bse3DI GCAATG 2 cut(s) 263, 1485
BseBI CCWGG 2 cut(s) 452, 794
BseDI CCNNGG 5 cut(s) 11, 508, 792, 1243, 1424
BseGI GGATG 6 cut(s) 185, 204, 252, 387, 414, 1317
BseLI CCNNNNNNNGG 8 cut(s) 457, 539, 685, 1009, 1010, 1178, 1247, 1248
BseMI GCAATG 2 cut(s) 263, 1485
BseMII CTCAG 3 cut(s) 483, 960, 1341
BseNI ACTGG 1 cut(s) 1337
BseRI GAGGAG 1 cut(s) 720
BseSI GKGCMC 2 cut(s) 304, 642
BseYI CCCAGC 4 cut(s) 151, 455, 1044, 1298
Bsh1236I CGCG 3 cut(s) 731, 753, 839
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 3 cut(s) 342, 552, 689
BshNI GGYRCC 1 cut(s) 1219
BsiEI CGRYCG 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 2 cut(s) 696, 1083
BslFI GGGAC 4 cut(s) 259, 1099, 1360, 1477
BslI CCNNNNNNNGG 8 cut(s) 457, 539, 685, 1009, 1010, 1178, 1247, 1248
BsmAI GTCTC 3 cut(s) 92, 431, 957
BsmFI GGGAC 4 cut(s) 259, 1099, 1360, 1477
BsnI GGCC 3 cut(s) 342, 552, 689
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 304, 642, 1051
Bsp1407I TGTACA 1 cut(s) 1395
Bsp143I GATC 6 cut(s) 91, 410, 726, 1360, 1372, 1450
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 5 cut(s) 519, 564, 702, 839, 1248
BspANI GGCC 3 cut(s) 342, 552, 689
BspCNI CTCAG 3 cut(s) 484, 961, 1342
BspFNI CGCG 3 cut(s) 731, 753, 839
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 5 cut(s) 449, 709, 783, 1221, 1465
BspPI GGATC 2 cut(s) 405, 1458
BspT107I GGYRCC 1 cut(s) 1219
BspTNI GGTCTC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 263, 1485
BsrGI TGTACA 1 cut(s) 1395
BsrI ACTGG 1 cut(s) 1337
BssECI CCNNGG 5 cut(s) 11, 508, 792, 1243, 1424
BssMI GATC 6 cut(s) 91, 410, 726, 1360, 1372, 1450
BssT1I CCWWGG 2 cut(s) 11, 508
Bst2UI CCWGG 2 cut(s) 452, 794
Bst4CI ACNGT 5 cut(s) 538, 575, 644, 766, 772
BstAUI TGTACA 1 cut(s) 1395
BstBAI YACGTR 3 cut(s) 280, 367, 421
BstC8I GCNNGC 2 cut(s) 712, 1492
BstDEI CTNAG 5 cut(s) 492, 924, 932, 969, 1350
BstDSI CCRYGG 2 cut(s) 508, 1243
BstF5I GGATG 6 cut(s) 185, 204, 252, 387, 414, 1317
BstFNI CGCG 3 cut(s) 731, 753, 839
BstKTI GATC 6 cut(s) 94, 413, 729, 1363, 1375, 1453
BstMAI GTCTC 3 cut(s) 92, 431, 957
BstMBI GATC 6 cut(s) 91, 410, 726, 1360, 1372, 1450
BstMCI CGRYCG 1 cut(s) 658
BstMWI GCNNNNNNNGC 3 cut(s) 74, 1097, 1491
BstNI CCWGG 2 cut(s) 452, 794
BstNSI RCATGY 2 cut(s) 400, 1396
BstPAI GACNNNNGTC 1 cut(s) 1568
BstSCI CCNGG 3 cut(s) 450, 792, 1082
BstSFI CTRYAG 2 cut(s) 481, 534
BstSLI GKGCMC 2 cut(s) 304, 642
BstUI CGCG 3 cut(s) 731, 753, 839
BstV2I GAAGAC 2 cut(s) 681, 1568
BstX2I RGATCY 1 cut(s) 1450
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 1 cut(s) 1450
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 3 cut(s) 342, 552, 689
BtgI CCRYGG 2 cut(s) 508, 1243
BtsCI GGATG 6 cut(s) 185, 204, 252, 387, 414, 1317
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 2 cut(s) 258, 565
Cac8I GCNNGC 2 cut(s) 712, 1492
CaiI CAGNNNCTG 2 cut(s) 770, 1094
CciI TCATGA 1 cut(s) 94
Cfr13I GGNCC 3 cut(s) 448, 687, 1464
Csp6I GTAC 6 cut(s) 592, 733, 749, 894, 1396, 1525
CviQI GTAC 6 cut(s) 592, 733, 749, 894, 1396, 1525
DdeI CTNAG 5 cut(s) 492, 924, 932, 969, 1350
DpnI GATC 6 cut(s) 93, 412, 728, 1362, 1374, 1452
DpnII GATC 6 cut(s) 91, 410, 726, 1360, 1372, 1450
EciI GGCGGA 1 cut(s) 717
Eco130I CCWWGG 2 cut(s) 11, 508
Eco24I GRGCYC 1 cut(s) 1051
Eco31I GGTCTC 1 cut(s) 92
Eco32I GATATC 1 cut(s) 1266
Eco47I GGWCC 2 cut(s) 448, 1464
Eco57I CTGAAG 5 cut(s) 63, 69, 541, 1116, 1513
Eco72I CACGTG 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 450, 792
EcoRV GATATC 1 cut(s) 1266
EcoT14I CCWWGG 2 cut(s) 11, 508
EcoT38I GRGCYC 1 cut(s) 1051
ErhI CCWWGG 2 cut(s) 11, 508
FalI AAGNNNNNCTT 4 cut(s) 581, 613, 1089, 1121
FaqI GGGAC 4 cut(s) 259, 1099, 1360, 1477
FauI CCCGC 2 cut(s) 526, 1241
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 2 cut(s) 423, 1572
FokI GGATG 6 cut(s) 172, 191, 239, 374, 401, 1324
FriOI GRGCYC 1 cut(s) 1051
GsaI CCCAGC 4 cut(s) 155, 459, 1048, 1302
HaeIII GGCC 3 cut(s) 342, 552, 689
HapII CCGG 2 cut(s) 696, 1083
HincII GTYRAC 3 cut(s) 607, 1230, 1573
HindII GTYRAC 3 cut(s) 607, 1230, 1573
HindIII AAGCTT 2 cut(s) 845, 1098
HinfI GANTC 8 cut(s) 197, 219, 272, 928, 965, 1303, 1402, 1420
HpaII CCGG 2 cut(s) 696, 1083
HphI GGTGA 3 cut(s) 131, 482, 1564
Hpy166II GTNNAC 7 cut(s) 424, 473, 607, 640, 647, 1230, 1573
Hpy188III TCNNGA 8 cut(s) 95, 653, 758, 1066, 1110, 1138, 1309, 1454
Hpy8I GTNNAC 7 cut(s) 424, 473, 607, 640, 647, 1230, 1573
HpyAV CCTTC 3 cut(s) 125, 256, 1243
HpyCH4III ACNGT 5 cut(s) 538, 575, 644, 766, 772
HpyCH4IV ACGT 3 cut(s) 279, 366, 420
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 1097, 1491
HpyF3I CTNAG 5 cut(s) 492, 924, 932, 969, 1350
HpySE526I ACGT 3 cut(s) 279, 366, 420
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 6 cut(s) 91, 410, 726, 1360, 1372, 1450
LmnI GCTCC 1 cut(s) 707
LweI GCATC 3 cut(s) 610, 1280, 1364
MaeII ACGT 3 cut(s) 279, 366, 420
MaeIII GTNAC 1 cut(s) 766
MalI GATC 6 cut(s) 93, 412, 728, 1362, 1374, 1452
MboI GATC 6 cut(s) 91, 410, 726, 1360, 1372, 1450
MboII GAAGA 6 cut(s) 337, 376, 398, 686, 1573, 1609
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 1 cut(s) 1450
MhlI GDGCHC 3 cut(s) 304, 642, 1051
MluCI AATT 9 cut(s) 6, 144, 156, 374, 486, 738, 1007, 1167, 1623
MluI ACGCGT 1 cut(s) 751
MlyI GAGTC 4 cut(s) 281, 922, 959, 1396
MmeI TCCRAC 2 cut(s) 192, 526
MseI TTAA 3 cut(s) 402, 741, 1521
MslI CAYNNNNRTG 2 cut(s) 558, 1397
MspA1I CMGCKG 2 cut(s) 89, 521
MspI CCGG 2 cut(s) 696, 1083
MspR9I CCNGG 3 cut(s) 452, 794, 1084
MunI CAATTG 1 cut(s) 144
MvaI CCWGG 2 cut(s) 452, 794
MvnI CGCG 3 cut(s) 731, 753, 839
MwoI GCNNNNNNNGC 3 cut(s) 74, 1097, 1491
NciI CCSGG 1 cut(s) 1084
NcoI CCATGG 1 cut(s) 508
NdeII GATC 6 cut(s) 91, 410, 726, 1360, 1372, 1450
NlaIV GGNNCC 5 cut(s) 449, 709, 783, 1221, 1465
NspI RCATGY 2 cut(s) 400, 1396
OliI CACNNNNGTG 1 cut(s) 558
PagI TCATGA 1 cut(s) 94
PciI ACATGT 2 cut(s) 396, 1392
PfeI GAWTC 4 cut(s) 197, 219, 1303, 1420
PflFI GACNNNGTC 2 cut(s) 815, 1154
PflMI CCANNNNNTGG 1 cut(s) 1178
PleI GAGTC 4 cut(s) 280, 922, 959, 1396
PmaCI CACGTG 1 cut(s) 280
PmlI CACGTG 1 cut(s) 280
PpsI GAGTC 4 cut(s) 280, 922, 959, 1396
Ppu21I YACGTR 3 cut(s) 280, 367, 421
PscI ACATGT 2 cut(s) 396, 1392
PshAI GACNNNNGTC 1 cut(s) 1568
PshBI ATTAAT 1 cut(s) 741
Psp6I CCWGG 2 cut(s) 450, 792
PspCI CACGTG 1 cut(s) 280
PspFI CCCAGC 4 cut(s) 151, 455, 1044, 1298
PspGI CCWGG 2 cut(s) 450, 792
PspN4I GGNNCC 5 cut(s) 449, 709, 783, 1221, 1465
PspPI GGNCC 3 cut(s) 448, 687, 1464
PstNI CAGNNNCTG 2 cut(s) 770, 1094
PsuI RGATCY 1 cut(s) 1450
PsyI GACNNNGTC 2 cut(s) 815, 1154
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 6 cut(s) 593, 734, 750, 895, 1397, 1526
RsaNI GTAC 6 cut(s) 592, 733, 749, 894, 1396, 1525
RseI CAYNNNNRTG 2 cut(s) 558, 1397
SalI GTCGAC 1 cut(s) 1571
SaqAI TTAA 3 cut(s) 402, 741, 1521
Sau3AI GATC 6 cut(s) 91, 410, 726, 1360, 1372, 1450
Sau96I GGNCC 3 cut(s) 448, 687, 1464
ScaI AGTACT 1 cut(s) 1526
SchI GAGTC 4 cut(s) 281, 922, 959, 1396
ScrFI CCNGG 3 cut(s) 452, 794, 1084
SduI GDGCHC 3 cut(s) 304, 642, 1051
SfaNI GCATC 3 cut(s) 610, 1280, 1364
SfcI CTRYAG 2 cut(s) 481, 534
SinI GGWCC 2 cut(s) 448, 1464
SmiMI CAYNNNNRTG 2 cut(s) 558, 1397
SmlI CTYRAG 2 cut(s) 1119, 1214
SmoI CTYRAG 2 cut(s) 1119, 1214
Sse9I AATT 9 cut(s) 6, 144, 156, 374, 486, 738, 1007, 1167, 1623
SsiI CCGC 5 cut(s) 519, 564, 702, 839, 1248
StyD4I CCNGG 3 cut(s) 450, 792, 1082
StyI CCWWGG 2 cut(s) 11, 508
TaaI ACNGT 5 cut(s) 538, 575, 644, 766, 772
TaiI ACGT 3 cut(s) 282, 369, 423
TaqI TCGA 5 cut(s) 351, 393, 409, 654, 1572
TaqII GACCGA 1 cut(s) 672
TasI AATT 9 cut(s) 6, 144, 156, 374, 486, 738, 1007, 1167, 1623
TatI WGTACW 2 cut(s) 1395, 1524
TfiI GAWTC 4 cut(s) 197, 219, 1303, 1420
Tru1I TTAA 3 cut(s) 402, 741, 1521
Tru9I TTAA 3 cut(s) 402, 741, 1521
TscAI CASTG 2 cut(s) 265, 565
TspDTI ATGAA 7 cut(s) 51, 338, 376, 853, 930, 1031, 1050
TspGWI ACGGA 2 cut(s) 280, 824
TspRI CASTG 2 cut(s) 265, 565
Tth111I GACNNNGTC 2 cut(s) 815, 1154
Van91I CCANNNNNTGG 1 cut(s) 1178
VneI GTGCAC 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 448, 1464
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 1 cut(s) 374
XceI RCATGY 2 cut(s) 400, 1396
XcmI CCANNNNNNNNNTGG 1 cut(s) 1478
XmiI GTMKAC 2 cut(s) 423, 1572
ZrmI AGTACT 1 cut(s) 1526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.