FvH4_3g11330

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
6678550 .. 6680721
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11330.t1

Sequence Viewer

Length: 1605 bp
ATGGCAATTCGAAGGCTTTCGCAGCTCTTGCTACCTATTCTTCTTGTTCTATCCGTTTCTTGCATAGCCTCAGCTTCATCCTCAGCCCCTGACAACTTTGTTTCATGTCTTCTAAGCCATTCGCTCCCTTCTCACCCAATCGGTCCAGCAATTTACACTCCCAACAATGCTTCATACTCCTCCGTTTTGGAATCCTACATCCGAAACCTCCGATTCAACGAATCATACACCCGAAAACCTTACCTCATCATCACTGCGTTGCATGTATCTCATGTCCAACAAGTCATTCTTTGTGCTCAGAAGCACAACTTACAGATGAAAATTAGAAGCGGAGGCCACGATTACGAGGGTGTGTCGTATGTGGCTGAAGTCCCATTCTTCATCCTCGACCTCTTTAATCTCCGAACCATCAATGTAGACATCAAAACCGAGACTGCATGGGTCCAGGCCGGTGCTACTCTAGGCGAAGTTTACTACAGAATTCACGAGAAAAGCAAAGTCCATGGATTTCCGGCCGGTGTTTGCCCCACAGTCGGTGTTGGAGGACTCTTCAGTGGCGGTGGATATGGTGTCATGTTGAGAAAGTACGGCTTGTCAGTTGATAACATAGTCGATGCACAAATAGTTGATGTGCATGGAAGACTTCTTGATCGAAAATCTATGGGAGAAGACCTCTTTTGGGCCATAACCGGAGGCGGAGGAGCCAGCTTTGGAGTGGTTATCGCGTACAAGATCAACCTTGTACCCGTCCCAGAAACCGTTACTGTTTTCAAGGTTATAAGAACCTTGGAACAGAACGCTACGGACATTGTGTACCATTGGCAATATGTCGCACATAAGCTTGACAATGACTTGTTCATCAGGCTTACCATGGATGTTGTCAATGTAACTGGCTCCCAAACTGGAGAAAAGACACTAAGAGCTACATTCATGGCCTTGTTTCTTGGAGACTCCGCGAGACTACTCTCGGTGATGAACAAGAGTTTCCCTGAGTTGGGTTTGAAGCAATCTGATTGCCAAGAAATGAGTTGGGTTGAATCGACCCTTTTCTGGACAAGCTTCCCAAATGGGACAGCTCTGGACGCTTTGCTTCGTAGAGATCCTCAAGTACTTACCCACTTAAAGAGGAAATCGGACTACGTCAAGCAGCCAATTCCGAAAGCTGGTTTGAAGTGGATTATTCAGAAAATGATCGAGTTGCAGACGCCCATGTTGACTTTCAATCCTTACGGCGGAAGAATGGCTGAGATTGCAGCATCTGCAAAGCCTTTTCCACATAGAGCTGGGAATCTCTGGAAGGTTCAGTATGCAACAAACTGGAACGCTTCTGGGTCCGAAGCTGCGGAGAAATATATCGATTTGACGAGGAAGTTGTTCAAGTACATGACTCCTTTTGTTTCCAAGAACCCGAGAGAGGCGTTCTTCAACTATAAAGATCTTGACATTGGGATCAACCACAATGACAAGGGAAGCTACTTTGAGGGAAGAGTTTATGGTGTCAAATATTTCAAGGAAAATTTCGATAAGTTGGTGCTTATTAAGACCAAGGTTGATCCAGGTAATTTCTTTAGGAATGAACAAAGTATCCCTACTCTTCCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

535

Amino Acids

59.86

Weight (kDa)

9.15

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 82 - 216 4.2e-22 FAD binding domain
BBE PF08031 473 - 530 9.6e-18 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 779
AccI GTMKAC 1 cut(s) 417
AccII CGCG 2 cut(s) 725, 956
AciI CCGC 6 cut(s) 330, 558, 696, 954, 1233, 1343
AclWI GGATC 3 cut(s) 1094, 1457, 1547
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 2 cut(s) 480, 1516
AcuI CTGAAG 2 cut(s) 387, 535
AcyI GRCGYC 1 cut(s) 1205
AfaI GTAC 6 cut(s) 587, 728, 744, 815, 1110, 1382
AfiI CCNNNNNNNGG 8 cut(s) 533, 679, 994, 995, 1050, 1163, 1232, 1414
AgsI TTSAA 9 cut(s) 217, 772, 1003, 1037, 1171, 1222, 1378, 1426, 1510
AjnI CCWGG 2 cut(s) 444, 1555
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AloI GAACNNNNNNTCC 2 cut(s) 1569, 1601
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 3 cut(s) 425, 942, 952
AlwI GGATC 3 cut(s) 1094, 1457, 1547
AlwNI CAGNNNCTG 2 cut(s) 89, 1259
Ama87I CYCGRG 1 cut(s) 1408
AoxI GGCC 5 cut(s) 334, 447, 513, 681, 933
ApeKI GCWGC 4 cut(s) 22, 1147, 1253, 1340
ApoI RAATTY 2 cut(s) 480, 1516
Asp700I GAANNNNTTC 2 cut(s) 16, 1373
AspS9I GGNCC 4 cut(s) 143, 442, 681, 1332
AsuHPI GGTGA 2 cut(s) 125, 982
AsuII TTCGAA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 1408
AvaII GGWCC 3 cut(s) 143, 442, 1332
BauI CACGAG 1 cut(s) 485
BbsI GAAGAC 3 cut(s) 101, 646, 675
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 2 cut(s) 70, 82
BbvI GCAGC 4 cut(s) 34, 1159, 1265, 1327
BccI CCATC 1 cut(s) 416
BceAI ACGGC 2 cut(s) 604, 1246
BciT130I CCWGG 2 cut(s) 446, 1557
BciVI GTATCC 1 cut(s) 1595
BcoDI GTCTC 3 cut(s) 425, 942, 952
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 1 cut(s) 475
BfuI GTATCC 1 cut(s) 1595
BglII AGATCT 1 cut(s) 1435
BisI GCNGC 4 cut(s) 23, 1148, 1254, 1341
BlsI GCNGC 4 cut(s) 24, 1149, 1255, 1342
BmcAI AGTACT 1 cut(s) 1110
Bme1390I CCNGG 2 cut(s) 446, 1557
Bme18I GGWCC 3 cut(s) 143, 442, 1332
BmeT110I CYCGRG 1 cut(s) 1408
BmgT120I GGNCC 4 cut(s) 143, 442, 681, 1332
BmiI GGNNCC 4 cut(s) 443, 703, 895, 1333
BmrFI CCNGG 2 cut(s) 446, 1557
BmsI GCATC 2 cut(s) 604, 1265
BpiI GAAGAC 3 cut(s) 101, 646, 675
BplI GAGNNNNNCTC 2 cut(s) 657, 689
BpmI CTGGAG 1 cut(s) 924
Bpu10I CCTNAGC 2 cut(s) 70, 82
Bpu14I TTCGAA 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 1089
Bsa29I ATCGAT 1 cut(s) 1356
BsaHI GRCGYC 1 cut(s) 1205
BsaJI CCNNGG 4 cut(s) 502, 786, 870, 1545
BsaWI WCCGGW 1 cut(s) 689
Bsc4I CCNNNNNNNGG 8 cut(s) 533, 679, 994, 995, 1050, 1163, 1232, 1414
Bse118I RCCGGY 2 cut(s) 449, 515
Bse1I ACTGG 3 cut(s) 895, 907, 1322
BseBI CCWGG 2 cut(s) 446, 1557
BseCI ATCGAT 1 cut(s) 1356
BseDI CCNNGG 4 cut(s) 502, 786, 870, 1545
BseGI GGATG 4 cut(s) 77, 198, 381, 880
BseLI CCNNNNNNNGG 8 cut(s) 533, 679, 994, 995, 1050, 1163, 1232, 1414
BseMII CTCAG 5 cut(s) 84, 96, 311, 981, 1236
BseNI ACTGG 3 cut(s) 895, 907, 1322
BseRI GAGGAG 2 cut(s) 169, 714
BseX3I CGGCCG 1 cut(s) 513
BseXI GCAGC 4 cut(s) 34, 1159, 1265, 1327
BseYI CCCAGC 1 cut(s) 1283
Bsh1236I CGCG 2 cut(s) 725, 956
Bsh1285I CGRYCG 1 cut(s) 516
BshFI GGCC 5 cut(s) 336, 449, 515, 683, 935
BshVI ATCGAT 1 cut(s) 1356
BsiEI CGRYCG 1 cut(s) 516
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 1408
BsiSI CCGG 4 cut(s) 450, 512, 516, 690
BslFI GGGAC 3 cut(s) 356, 734, 1084
BslI CCNNNNNNNGG 8 cut(s) 533, 679, 994, 995, 1050, 1163, 1232, 1414
BsmAI GTCTC 3 cut(s) 425, 942, 952
BsmFI GGGAC 3 cut(s) 356, 734, 1084
BsnI GGCC 5 cut(s) 336, 449, 515, 683, 935
BsoBI CYCGRG 1 cut(s) 1408
Bsp119I TTCGAA 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 7 cut(s) 649, 732, 1099, 1191, 1435, 1449, 1552
Bsp19I CCATGG 2 cut(s) 502, 870
BspACI CCGC 6 cut(s) 330, 558, 696, 954, 1233, 1343
BspANI GGCC 5 cut(s) 336, 449, 515, 683, 935
BspCNI CTCAG 5 cut(s) 83, 95, 310, 982, 1237
BspDI ATCGAT 1 cut(s) 1356
BspFNI CGCG 2 cut(s) 725, 956
BspLI GGNNCC 4 cut(s) 443, 703, 895, 1333
BspPI GGATC 3 cut(s) 1094, 1457, 1547
BspT104I TTCGAA 1 cut(s) 10
BsrFI RCCGGY 2 cut(s) 449, 515
BsrI ACTGG 3 cut(s) 895, 907, 1322
BssAI RCCGGY 2 cut(s) 449, 515
BssECI CCNNGG 4 cut(s) 502, 786, 870, 1545
BssMI GATC 7 cut(s) 649, 732, 1099, 1191, 1435, 1449, 1552
BssNI GRCGYC 1 cut(s) 1205
BssSI CACGAG 1 cut(s) 485
BssT1I CCWWGG 4 cut(s) 502, 786, 870, 1545
Bst2BI CACGAG 1 cut(s) 485
Bst2UI CCWGG 2 cut(s) 446, 1557
Bst4CI ACNGT 3 cut(s) 532, 760, 766
Bst6I CTCTTC 3 cut(s) 554, 1480, 1599
BstACI GRCGYC 1 cut(s) 1205
BstAPI GCANNNNNTGC 2 cut(s) 28, 1259
BstBI TTCGAA 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 706
BstDEI CTNAG 7 cut(s) 70, 82, 113, 297, 917, 990, 1245
BstDSI CCRYGG 2 cut(s) 502, 870
BstF5I GGATG 4 cut(s) 77, 198, 381, 880
BstFNI CGCG 2 cut(s) 725, 956
BstKTI GATC 7 cut(s) 652, 735, 1102, 1194, 1438, 1452, 1555
BstMAI GTCTC 3 cut(s) 425, 942, 952
BstMBI GATC 7 cut(s) 649, 732, 1099, 1191, 1435, 1449, 1552
BstMCI CGRYCG 1 cut(s) 516
BstMWI GCNNNNNNNGC 5 cut(s) 22, 28, 1082, 1250, 1259
BstNI CCWGG 2 cut(s) 446, 1557
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 444, 1555
BstSFI CTRYAG 1 cut(s) 475
BstUI CGCG 2 cut(s) 725, 956
BstV1I GCAGC 4 cut(s) 34, 1159, 1265, 1327
BstV2I GAAGAC 3 cut(s) 101, 646, 675
BstX2I RGATCY 2 cut(s) 1099, 1435
BstYI RGATCY 2 cut(s) 1099, 1435
BstZI CGGCCG 1 cut(s) 513
Bsu15I ATCGAT 1 cut(s) 1356
BsuI GTATCC 1 cut(s) 1595
BsuRI GGCC 5 cut(s) 336, 449, 515, 683, 935
BsuTUI ATCGAT 1 cut(s) 1356
BtgI CCRYGG 2 cut(s) 502, 870
BtsCI GGATG 4 cut(s) 77, 198, 381, 880
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 559
Cac8I GCNNGC 1 cut(s) 706
CaiI CAGNNNCTG 2 cut(s) 89, 1259
Cfr10I RCCGGY 2 cut(s) 449, 515
Cfr13I GGNCC 4 cut(s) 143, 442, 681, 1332
ClaI ATCGAT 1 cut(s) 1356
CseI GACGC 2 cut(s) 1091, 1213
Csp6I GTAC 6 cut(s) 586, 727, 743, 814, 1109, 1381
CviQI GTAC 6 cut(s) 586, 727, 743, 814, 1109, 1381
DdeI CTNAG 7 cut(s) 70, 82, 113, 297, 917, 990, 1245
DpnI GATC 7 cut(s) 651, 734, 1101, 1193, 1437, 1451, 1554
DpnII GATC 7 cut(s) 649, 732, 1099, 1191, 1435, 1449, 1552
EaeI YGGCCR 1 cut(s) 513
EagI CGGCCG 1 cut(s) 513
Eam1104I CTCTTC 3 cut(s) 554, 1480, 1599
EarI CTCTTC 3 cut(s) 554, 1480, 1599
EciI GGCGGA 2 cut(s) 711, 1248
EclXI CGGCCG 1 cut(s) 513
Eco130I CCWWGG 4 cut(s) 502, 786, 870, 1545
Eco47I GGWCC 3 cut(s) 143, 442, 1332
Eco52I CGGCCG 1 cut(s) 513
Eco57I CTGAAG 2 cut(s) 387, 535
Eco88I CYCGRG 1 cut(s) 1408
EcoRI GAATTC 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 444, 1555
EcoT14I CCWWGG 4 cut(s) 502, 786, 870, 1545
ErhI CCWWGG 4 cut(s) 502, 786, 870, 1545
FalI AAGNNNNNCTT 6 cut(s) 273, 305, 293, 325, 575, 607
FaqI GGGAC 3 cut(s) 356, 734, 1084
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 4 cut(s) 23, 1148, 1254, 1341
FokI GGATG 4 cut(s) 64, 185, 368, 887
Fsp4HI GCNGC 4 cut(s) 23, 1148, 1254, 1341
FspBI CTAG 1 cut(s) 461
GluI GCNGC 4 cut(s) 23, 1148, 1254, 1341
GsaI CCCAGC 1 cut(s) 1287
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 5 cut(s) 336, 449, 515, 683, 935
HapII CCGG 4 cut(s) 450, 512, 516, 690
HgaI GACGC 2 cut(s) 1091, 1213
Hin1I GRCGYC 1 cut(s) 1205
HincII GTYRAC 1 cut(s) 1215
HindII GTYRAC 1 cut(s) 1215
HindIII AAGCTT 2 cut(s) 839, 1057
HinfI GANTC 8 cut(s) 191, 213, 221, 546, 950, 1037, 1288, 1387
HpaII CCGG 4 cut(s) 450, 512, 516, 690
HphI GGTGA 2 cut(s) 125, 982
Hpy166II GTNNAC 4 cut(s) 418, 472, 814, 1215
Hpy188I TCNGA 9 cut(s) 203, 212, 300, 404, 1012, 1135, 1158, 1185, 1336
Hpy188III TCNNGA 6 cut(s) 485, 647, 1051, 1079, 1294, 1439
Hpy8I GTNNAC 4 cut(s) 418, 472, 814, 1215
HpyAV CCTTC 3 cut(s) 6, 138, 1291
HpyCH4III ACNGT 3 cut(s) 532, 760, 766
HpyCH4IV ACGT 1 cut(s) 1140
HpyCH4V TGCA 9 cut(s) 63, 262, 437, 617, 634, 1201, 1253, 1262, 1310
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 28, 1082, 1250, 1259
HpyF3I CTNAG 7 cut(s) 70, 82, 113, 297, 917, 990, 1245
HpySE526I ACGT 1 cut(s) 1140
Hsp92I GRCGYC 1 cut(s) 1205
Kzo9I GATC 7 cut(s) 649, 732, 1099, 1191, 1435, 1449, 1552
LmnI GCTCC 3 cut(s) 129, 701, 899
Lsp1109I GCAGC 4 cut(s) 34, 1159, 1265, 1327
LweI GCATC 2 cut(s) 604, 1265
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 1140
MaeIII GTNAC 2 cut(s) 760, 886
MalI GATC 7 cut(s) 651, 734, 1101, 1193, 1437, 1451, 1554
MboI GATC 7 cut(s) 649, 732, 1099, 1191, 1435, 1449, 1552
MflI RGATCY 2 cut(s) 1099, 1435
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 7 cut(s) 6, 150, 321, 480, 1152, 1516, 1561
MlyI GAGTC 3 cut(s) 540, 944, 1381
MmeI TCCRAC 2 cut(s) 301, 520
MroXI GAANNNNTTC 2 cut(s) 16, 1373
MseI TTAA 3 cut(s) 396, 1121, 1539
MspI CCGG 4 cut(s) 450, 512, 516, 690
MspR9I CCNGG 2 cut(s) 446, 1557
MvaI CCWGG 2 cut(s) 446, 1557
MvnI CGCG 2 cut(s) 725, 956
MwoI GCNNNNNNNGC 5 cut(s) 22, 28, 1082, 1250, 1259
NcoI CCATGG 2 cut(s) 502, 870
NdeII GATC 7 cut(s) 649, 732, 1099, 1191, 1435, 1449, 1552
NlaIV GGNNCC 4 cut(s) 443, 703, 895, 1333
NspI RCATGY 1 cut(s) 266
NspV TTCGAA 1 cut(s) 10
PdmI GAANNNNTTC 2 cut(s) 16, 1373
PfeI GAWTC 5 cut(s) 191, 213, 221, 1037, 1288
PflFI GACNNNGTC 1 cut(s) 1139
PkrI GCNGC 4 cut(s) 24, 1149, 1255, 1342
PleI GAGTC 3 cut(s) 540, 944, 1381
PpsI GAGTC 3 cut(s) 540, 944, 1381
PsiI TTATAA 1 cut(s) 779
Psp6I CCWGG 2 cut(s) 444, 1555
PspFI CCCAGC 1 cut(s) 1283
PspGI CCWGG 2 cut(s) 444, 1555
PspN4I GGNNCC 4 cut(s) 443, 703, 895, 1333
PspPI GGNCC 4 cut(s) 143, 442, 681, 1332
PstNI CAGNNNCTG 2 cut(s) 89, 1259
PsuI RGATCY 2 cut(s) 1099, 1435
PsyI GACNNNGTC 1 cut(s) 1139
RsaI GTAC 6 cut(s) 587, 728, 744, 815, 1110, 1382
RsaNI GTAC 6 cut(s) 586, 727, 743, 814, 1109, 1381
SaqAI TTAA 3 cut(s) 396, 1121, 1539
SatI GCNGC 4 cut(s) 23, 1148, 1254, 1341
Sau3AI GATC 7 cut(s) 649, 732, 1099, 1191, 1435, 1449, 1552
Sau96I GGNCC 4 cut(s) 143, 442, 681, 1332
ScaI AGTACT 1 cut(s) 1110
SchI GAGTC 3 cut(s) 540, 944, 1381
ScrFI CCNGG 2 cut(s) 446, 1557
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 2 cut(s) 604, 1265
SfcI CTRYAG 1 cut(s) 475
SfuI TTCGAA 1 cut(s) 10
SinI GGWCC 3 cut(s) 143, 442, 1332
SmlI CTYRAG 1 cut(s) 1104
SmoI CTYRAG 1 cut(s) 1104
Sse9I AATT 7 cut(s) 6, 150, 321, 480, 1152, 1516, 1561
SsiI CCGC 6 cut(s) 330, 558, 696, 954, 1233, 1343
SspI AATATT 1 cut(s) 1505
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 2 cut(s) 444, 1555
StyI CCWWGG 4 cut(s) 502, 786, 870, 1545
TaaI ACNGT 3 cut(s) 532, 760, 766
TaiI ACGT 1 cut(s) 1143
TaqI TCGA 8 cut(s) 10, 387, 612, 652, 1040, 1194, 1356, 1521
TaqII GACCGA 1 cut(s) 131
TasI AATT 7 cut(s) 6, 150, 321, 480, 1152, 1516, 1561
TatI WGTACW 2 cut(s) 1108, 1380
TfiI GAWTC 5 cut(s) 191, 213, 221, 1037, 1288
Tru1I TTAA 3 cut(s) 396, 1121, 1539
Tru9I TTAA 3 cut(s) 396, 1121, 1539
TscAI CASTG 2 cut(s) 259, 559
TseI GCWGC 4 cut(s) 22, 1147, 1253, 1340
TspDTI ATGAA 9 cut(s) 66, 93, 162, 332, 370, 847, 919, 989, 1590
TspGWI ACGGA 3 cut(s) 43, 172, 818
TspRI CASTG 2 cut(s) 259, 559
Tth111I GACNNNGTC 1 cut(s) 1139
VpaK11BI GGWCC 3 cut(s) 143, 442, 1332
XapI RAATTY 2 cut(s) 480, 1516
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 2 cut(s) 16, 1373
XspI CTAG 1 cut(s) 461
ZrmI AGTACT 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.