Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005954

Physical Location & Seq

Genomic Coordinates Forward (+)

13749538 .. 13751015

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCTAGATATGGCAATTCTAAGGCTTTCACAGCTCTTACTCCTTCCTATTCTTCTAGTTCTTTCCATTTCTTGTACAGCCTCAGCTTCATCCTCAGCTCCTGGGAACTTTGTTTCATGTCTTTTAAGCCATTCGCTTCCTTCTCACCCAATCGGTCCAGCAATTTACACTCCCAACAATGCTTCTTACTCCTCCGTTTTGGAATCCTACATCCGAAACCTCCGTTTCAACGAATCATACACCCGAAAACCTTACCTTATTATCACCGCACTGCACGTATCCCAAGTGCAACAAACCATCCTTTGTGCTCAAAAGCACAACTTACAGATGAAAATTAGAAGCGGAGGCCACGATTACGAGGGTGTGTCCTATGTGGCTGAAGTCCCATTCTTCATCGTCGACCTGTTTAATCTTCGAACCATAACTGGCGGTGGATATGGTAACATAATGAGAAAGTACGGCTTGTCAGTTGACAACATAGTCGATGCACAAATAGTTGATGTGCATGGAAGACTTCTTGATCGAAAATCGATGGGGGAAGACCTCTTTTGGGCCATCACCGGAGGCGGAGGAGCCAGCTTTGGAGTGAATGCAACTGACATTATCTATCGTTGGCAATATGTCGCAAATAAGCTTGACAATGACTTGTTCATCAGGCTTACCATGGATGTTGTCAATGTAACTGGCTCTCAAGCTGGAGAAAAGACTCTAAGAGCTACATTCAACGCCTTGTTTCTTGGAGACTCCGCAAGACTACTCACCGCGATGAACAAGAGTTTCCCTGAACTGGGTTTGGAGCAATCCAATTGCCAAGAAATGAGTTGGGTTGAATCGACGATTTTCTGGACAAGATTTGCAAACGGGACAGCTCCGGAGGCTTTGCTCTCTAGAGTTCCTCAAGTACTTACCCACTTGAAGAGGAAGTCGGACTACGTCAAGCAGCCAATTCCGAAAGTTCAGTATGCAACAAGCTGGGACGCTTCTGGGTCCGAGGCTGCGGAGAAATACATCGATTTGACGAGGAAGTTGTTCGAGTACATGACTCCTTTCGTTTCCAACAACCCGAGGGAAGCCTTCTTCAACTATAAAGATCTCGACATTGGGATCAACGTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

373

Amino Acids

41.42

Weight (kDa)

7.05

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30700
fragaria_vesca	FvH4_3g11300 FvH4_3g11330
malus_domestica	MD05G1266000.v1.1 MD05G1266200.v1.1 MD05G1266400.v1.1 MD05G1266900.v1.1
prunus_persica	Prupe.1G171200_v2.0.a1 Prupe.4G099500_v2.0.a1 Prupe.7G051400_v2.0.a1
pyrus_communis	pycom05g25010 pycom05g25020
rosa_chinensis	RchiOBHm_Chr5g0018191 RchiOBHm_Chr5g0018231 RchiOBHm_Chr5g0018281
rosa_laevigata	RLG00000012618 RLG00000032345 RLG00000032346 RLG00000032347
rosa_multiflora	Rmu_sc0008158.1_g000003 Rmu_sc0012569.1_g000002 Rmu_sc0013020.1_g000006 Rmu_sc0018521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059470
rosa_rugosa	Rorug05G0041100
rosa_wichuraiana	Rw5G011710 Rw5G011720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	764
AccIII	TCCGGA	1 cut(s)	871
AciI	CCGC	7 cut(s)	267, 342, 429, 567, 747, 762, 998
AclWI	GGATC	1 cut(s)	1112
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	5 cut(s)	76, 458, 903, 1037, 1113
AfiI	CCNNNNNNNGG	3 cut(s)	550, 787, 788
AgsI	TTSAA	5 cut(s)	229, 724, 830, 916, 1081
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	9 cut(s)	34, 86, 98, 579, 634, 695, 716, 869, 972
AluI	AGCT	9 cut(s)	34, 86, 98, 579, 634, 695, 716, 869, 972
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	735
AlwI	GGATC	1 cut(s)	1112
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	1063
Aor13HI	TCCGGA	1 cut(s)	871
AoxI	GGCC	2 cut(s)	346, 552
ApeKI	GCWGC	2 cut(s)	940, 995
Asp700I	GAANNNNTTC	1 cut(s)	1028
AspS9I	GGNCC	3 cut(s)	155, 552, 987
AsuHPI	GGTGA	4 cut(s)	137, 256, 550, 751
AsuII	TTCGAA	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	1063
AvaII	GGWCC	2 cut(s)	155, 987
BarI	GAAGNNNNNNTAC	2 cut(s)	914, 946
BbsI	GAAGAC	2 cut(s)	517, 546
Bbv12I	GWGCWC	1 cut(s)	310
BbvCI	CCTCAGC	2 cut(s)	82, 94
BbvI	GCAGC	2 cut(s)	952, 982
BccI	CCATC	3 cut(s)	305, 526, 563
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	102
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	735
BfaI	CTAG	3 cut(s)	5, 56, 888
BfuI	GTATCC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	1090
BisI	GCNGC	2 cut(s)	941, 996
BlsI	GCNGC	2 cut(s)	942, 997
BmcAI	AGTACT	1 cut(s)	903
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	2 cut(s)	155, 987
BmeT110I	CYCGRG	1 cut(s)	1063
BmgT120I	GGNCC	3 cut(s)	155, 552, 987
BmiI	GGNNCC	2 cut(s)	574, 988
BmrFI	CCNGG	1 cut(s)	102
BmrI	ACTGGG	1 cut(s)	797
BmsI	GCATC	1 cut(s)	475
BmuI	ACTGGG	1 cut(s)	797
BpiI	GAAGAC	2 cut(s)	517, 546
BpmI	CTGGAG	1 cut(s)	717
Bpu10I	CCTNAGC	2 cut(s)	82, 94
Bpu14I	TTCGAA	1 cut(s)	415
BpuEI	CTTGAG	2 cut(s)	675, 882
Bsa29I	ATCGAT	2 cut(s)	530, 1011
BsaAI	YACGTR	1 cut(s)	277
BsaJI	CCNNGG	4 cut(s)	101, 663, 990, 1064
BsaWI	WCCGGW	2 cut(s)	560, 871
Bsc4I	CCNNNNNNNGG	3 cut(s)	550, 787, 788
Bse1I	ACTGG	3 cut(s)	430, 688, 792
BseAI	TCCGGA	1 cut(s)	871
BseBI	CCWGG	1 cut(s)	102
BseCI	ATCGAT	2 cut(s)	530, 1011
BseDI	CCNNGG	4 cut(s)	101, 663, 990, 1064
BseGI	GGATG	4 cut(s)	89, 210, 297, 673
BseLI	CCNNNNNNNGG	3 cut(s)	550, 787, 788
BseMII	CTCAG	2 cut(s)	96, 108
BseNI	ACTGG	3 cut(s)	430, 688, 792
BseRI	GAGGAG	2 cut(s)	181, 585
BseXI	GCAGC	2 cut(s)	952, 982
BseYI	CCCAGC	1 cut(s)	972
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	764
BshFI	GGCC	2 cut(s)	348, 554
BshVI	ATCGAT	2 cut(s)	530, 1011
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	1063
BsiSI	CCGG	2 cut(s)	561, 872
BslFI	GGGAC	3 cut(s)	368, 877, 989
BslI	CCNNNNNNNGG	3 cut(s)	550, 787, 788
BsmAI	GTCTC	1 cut(s)	735
BsmFI	GGGAC	3 cut(s)	368, 877, 989
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	348, 554
BsoBI	CYCGRG	1 cut(s)	1063
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp13I	TCCGGA	1 cut(s)	871
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	520, 1090, 1104
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	7 cut(s)	267, 342, 429, 567, 747, 762, 998
BspANI	GGCC	2 cut(s)	348, 554
BspCNI	CTCAG	2 cut(s)	95, 107
BspDI	ATCGAT	2 cut(s)	530, 1011
BspEI	TCCGGA	1 cut(s)	871
BspFNI	CGCG	1 cut(s)	764
BspLI	GGNNCC	2 cut(s)	574, 988
BspPI	GGATC	1 cut(s)	1112
BspT104I	TTCGAA	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	430, 688, 792
BssECI	CCNNGG	4 cut(s)	101, 663, 990, 1064
BssMI	GATC	3 cut(s)	520, 1090, 1104
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	911
BstAUI	TGTACA	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	4 cut(s)	20, 82, 94, 710
BstDSI	CCRYGG	1 cut(s)	663
BstF5I	GGATG	4 cut(s)	89, 210, 297, 673
BstFNI	CGCG	1 cut(s)	764
BstKTI	GATC	3 cut(s)	523, 1093, 1107
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	3 cut(s)	520, 1090, 1104
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 875
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstUI	CGCG	1 cut(s)	764
BstV1I	GCAGC	2 cut(s)	952, 982
BstV2I	GAAGAC	2 cut(s)	517, 546
BstX2I	RGATCY	1 cut(s)	1090
BstYI	RGATCY	1 cut(s)	1090
Bsu15I	ATCGAT	2 cut(s)	530, 1011
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	348, 554
BsuTUI	ATCGAT	2 cut(s)	530, 1011
BtgI	CCRYGG	1 cut(s)	663
BtgZI	GCGATG	1 cut(s)	779
BtsCI	GGATG	4 cut(s)	89, 210, 297, 673
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	577
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	155, 552, 987
ClaI	ATCGAT	2 cut(s)	530, 1011
CseI	GACGC	1 cut(s)	986
Csp6I	GTAC	5 cut(s)	75, 457, 902, 1036, 1112
CviAII	CATG	4 cut(s)	117, 506, 664, 1039
CviQI	GTAC	5 cut(s)	75, 457, 902, 1036, 1112
DdeI	CTNAG	4 cut(s)	20, 82, 94, 710
DpnI	GATC	3 cut(s)	522, 1092, 1106
DpnII	GATC	3 cut(s)	520, 1090, 1104
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	911
EarI	CTCTTC	1 cut(s)	911
EciI	GGCGGA	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	663
Eco47I	GGWCC	2 cut(s)	155, 987
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	1063
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	4 cut(s)	120, 509, 667, 1042
FalI	AAGNNNNNCTT	4 cut(s)	305, 337, 446, 478
FaqI	GGGAC	3 cut(s)	368, 877, 989
FatI	CATG	4 cut(s)	116, 505, 663, 1038
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	2 cut(s)	941, 996
FokI	GGATG	4 cut(s)	76, 197, 284, 680
Fsp4HI	GCNGC	2 cut(s)	941, 996
FspBI	CTAG	3 cut(s)	5, 56, 888
GluI	GCNGC	2 cut(s)	941, 996
GsaI	CCCAGC	1 cut(s)	976
GsuI	CTGGAG	1 cut(s)	717
HaeIII	GGCC	2 cut(s)	348, 554
HapII	CCGG	2 cut(s)	561, 872
HgaI	GACGC	1 cut(s)	986
Hin1II	CATG	4 cut(s)	120, 509, 667, 1042
HincII	GTYRAC	2 cut(s)	400, 472
HindII	GTYRAC	2 cut(s)	400, 472
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	6 cut(s)	203, 233, 706, 743, 830, 1042
HpaII	CCGG	2 cut(s)	561, 872
HphI	GGTGA	4 cut(s)	137, 256, 550, 751
Hpy166II	GTNNAC	2 cut(s)	400, 472
Hpy188I	TCNGA	4 cut(s)	215, 928, 951, 991
Hpy188III	TCNNGA	5 cut(s)	518, 844, 872, 888, 1094
Hpy8I	GTNNAC	2 cut(s)	400, 472
Hpy99I	CGWCG	2 cut(s)	401, 838
HpyAV	CCTTC	3 cut(s)	53, 150, 1084
HpyCH4IV	ACGT	3 cut(s)	276, 933, 1110
HpyCH4V	TGCA	7 cut(s)	274, 289, 488, 505, 593, 857, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 875
HpyF3I	CTNAG	4 cut(s)	20, 82, 94, 710
HpySE526I	ACGT	3 cut(s)	276, 933, 1110
Hsp92II	CATG	4 cut(s)	120, 509, 667, 1042
Kpn2I	TCCGGA	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	520, 1090, 1104
LmnI	GCTCC	4 cut(s)	103, 572, 796, 874
Lsp1109I	GCAGC	2 cut(s)	952, 982
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	3 cut(s)	5, 56, 888
MaeII	ACGT	3 cut(s)	276, 933, 1110
MaeIII	GTNAC	2 cut(s)	440, 679
MalI	GATC	3 cut(s)	522, 1092, 1106
MboI	GATC	3 cut(s)	520, 1090, 1104
MboII	GAAGA	7 cut(s)	44, 382, 404, 522, 551, 928, 1069
MfeI	CAATTG	1 cut(s)	805
MflI	RGATCY	1 cut(s)	1090
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	5 cut(s)	15, 162, 333, 805, 945
MlyI	GAGTC	3 cut(s)	700, 737, 1036
MmeI	TCCRAC	2 cut(s)	906, 1080
MroI	TCCGGA	1 cut(s)	871
MroXI	GAANNNNTTC	1 cut(s)	1028
MseI	TTAA	2 cut(s)	125, 408
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	2 cut(s)	561, 872
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	805
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	764
MwoI	GCNNNNNNNGC	2 cut(s)	31, 875
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	3 cut(s)	520, 1090, 1104
NlaIII	CATG	4 cut(s)	120, 509, 667, 1042
NlaIV	GGNNCC	2 cut(s)	574, 988
NspV	TTCGAA	1 cut(s)	415
PctI	GAATGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	1028
PfeI	GAWTC	3 cut(s)	203, 233, 830
PflFI	GACNNNGTC	1 cut(s)	932
PkrI	GCNGC	2 cut(s)	942, 997
PleI	GAGTC	3 cut(s)	700, 737, 1036
PpsI	GAGTC	3 cut(s)	700, 737, 1036
Ppu21I	YACGTR	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	972
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	574, 988
PspPI	GGNCC	3 cut(s)	155, 552, 987
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	1090
PsyI	GACNNNGTC	1 cut(s)	932
RsaI	GTAC	5 cut(s)	76, 458, 903, 1037, 1113
RsaNI	GTAC	5 cut(s)	75, 457, 902, 1036, 1112
RseI	CAYNNNNRTG	1 cut(s)	764
SalI	GTCGAC	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	125, 408
SatI	GCNGC	2 cut(s)	941, 996
Sau3AI	GATC	3 cut(s)	520, 1090, 1104
Sau96I	GGNCC	3 cut(s)	155, 552, 987
ScaI	AGTACT	1 cut(s)	903
SchI	GAGTC	3 cut(s)	700, 737, 1036
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	1 cut(s)	475
SfuI	TTCGAA	1 cut(s)	415
SinI	GGWCC	2 cut(s)	155, 987
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	2 cut(s)	690, 897
SmoI	CTYRAG	2 cut(s)	690, 897
Sse9I	AATT	5 cut(s)	15, 162, 333, 805, 945
SsiI	CCGC	7 cut(s)	267, 342, 429, 567, 747, 762, 998
SspMI	CTAG	3 cut(s)	5, 56, 888
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	663
TaiI	ACGT	3 cut(s)	279, 936, 1113
TaqI	TCGA	9 cut(s)	399, 415, 483, 523, 530, 833, 1011, 1032, 1095
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	5 cut(s)	15, 162, 333, 805, 945
TatI	WGTACW	3 cut(s)	74, 901, 1035
TfiI	GAWTC	3 cut(s)	203, 233, 830
Tru1I	TTAA	2 cut(s)	125, 408
Tru9I	TTAA	2 cut(s)	125, 408
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	2 cut(s)	940, 995
TspDTI	ATGAA	6 cut(s)	78, 105, 344, 382, 640, 782
TspGWI	ACGGA	2 cut(s)	184, 212
TspRI	CASTG	1 cut(s)	276
Tth111I	GACNNNGTC	1 cut(s)	932
VpaK11BI	GGWCC	2 cut(s)	155, 987
XbaI	TCTAGA	1 cut(s)	887
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	1028
XspI	CTAG	3 cut(s)	5, 56, 888
ZrmI	AGTACT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.