Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018521.1

Orthogroup ID

OG0005954

Physical Location & Seq

Genomic Coordinates Forward (+)

6546 .. 10187

Gene Structure 3642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018521.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgcaagaaatggcaattctaaggctttcgcagctcttacttcttcctattcttctagttctctccatttcttgtacagcctcagcttcatcctcagctcctgagaactttgtttgctgtcttttaagccattcgctcccttctcacccaatcggtccagcaatttacactcccaacaatgcttcttactcctccgttttggaatcctacatccgaaacctccgtttcaacgaatcatacacccgaaaaccttaccttattatcaccgcattgcacgtatcccatgtgcaacaggccatcctttgtgctcaaaagcacgacttacagatgaaaattagaagcggaggccacgatttcgagggcatgtcgtatgtggctgaagtcccattcttcatcctcgacctgtttaatcttcgaaccatcaacgttgacatcaaaaccgagactgcatgggtccaggccggtgctactctcggcgaagtttactacagaatttacgagaaaagccgagtccatggattccccgccggtgtatgccccacagtcggtgttggaggacacttcagtggcggtggatatggtaacatgatgagaaagtacggcttgtcagttgacaacatagtcgatgcacaaatagttgatgtgcgtggaagacttcttgatcgaaaatcgatgggagaagacctcttttgggccatcaccggaggcggcggagccagctttggagtggtgatcgcctacaagatcaaccttgtacgcgtcccagagaccgttactgttttcagggttataagaaccttggaacagaatgcaactgacattgtgtatcgttggcaatatgtcgcaaataagcttgacaatgacttgttcatcaggcttaccatggatgttgtcaatgtaactggctctcaaactggagaaaagactctaagagctacattcaacgccttaagtgaattgttattgctgattatagaagaacttaggcgatatgtgcttggtgttgtcgcccttgatgaaacccaacttcatttgttcaatacaagctgcattatcctcataaatgcatgtaggttcatccgtggtagacttcaaaccacaacttccttgaatatgtctaattacagaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

377

Amino Acids

42.01

Weight (kDa)

8.41

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30700
fragaria_vesca	FvH4_3g11300 FvH4_3g11330
malus_domestica	MD05G1266000.v1.1 MD05G1266200.v1.1 MD05G1266400.v1.1 MD05G1266900.v1.1
prunus_persica	Prupe.1G171200_v2.0.a1 Prupe.4G099500_v2.0.a1 Prupe.7G051400_v2.0.a1
pyrus_communis	pycom05g25010 pycom05g25020
rosa_chinensis	RchiOBHm_Chr5g0018191 RchiOBHm_Chr5g0018231 RchiOBHm_Chr5g0018281
rosa_laevigata	RLG00000012618 RLG00000032345 RLG00000032346 RLG00000032347
rosa_multiflora	Rmu_sc0008158.1_g000003 Rmu_sc0012569.1_g000002 Rmu_sc0013020.1_g000006 Rmu_sc0018521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059470
rosa_rugosa	Rorug05G0041100
rosa_wichuraiana	Rw5G011710 Rw5G011720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
AasI	GACNNNNNNGTC	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	1087
AccII	CGCG	1 cut(s)	759
AciI	CCGC	6 cut(s)	267, 342, 525, 570, 708, 711
AclI	AACGTT	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	2 cut(s)	399, 547
AfaI	GTAC	3 cut(s)	76, 599, 756
AfiI	CCNNNNNNNGG	2 cut(s)	545, 691
AflII	CTTAAG	1 cut(s)	949
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	5 cut(s)	229, 943, 1039, 1094, 1111
AjnI	CCWGG	1 cut(s)	456
AleI	CACNNNNGTG	1 cut(s)	564
AluBI	AGCT	7 cut(s)	34, 86, 98, 720, 853, 935, 1047
AluI	AGCT	7 cut(s)	34, 86, 98, 720, 853, 935, 1047
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	2 cut(s)	437, 761
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	4 cut(s)	294, 346, 459, 693
ApeKI	GCWGC	2 cut(s)	31, 1047
ApoI	RAATTY	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	155, 454, 693
AsuHPI	GGTGA	4 cut(s)	137, 256, 691, 742
AsuII	TTCGAA	1 cut(s)	415
AvaII	GGWCC	2 cut(s)	155, 454
BbsI	GAAGAC	2 cut(s)	658, 687
Bbv12I	GWGCWC	1 cut(s)	310
BbvCI	CCTCAGC	2 cut(s)	82, 94
BbvI	GCAGC	2 cut(s)	43, 1034
BccI	CCATC	4 cut(s)	305, 428, 667, 704
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	458
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	437, 761
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	487
BfrI	CTTAAG	1 cut(s)	949
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	3 cut(s)	32, 709, 1048
BlsI	GCNGC	3 cut(s)	33, 710, 1049
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	2 cut(s)	155, 454
BmgT120I	GGNCC	3 cut(s)	155, 454, 693
BmiI	GGNNCC	2 cut(s)	455, 715
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	2 cut(s)	658, 687
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpmI	CTGGAG	1 cut(s)	936
Bpu10I	CCTNAGC	2 cut(s)	82, 94
Bpu14I	TTCGAA	1 cut(s)	415
Bsa29I	ATCGAT	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	4 cut(s)	514, 798, 882, 1081
BsaWI	WCCGGW	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	2 cut(s)	545, 691
Bse118I	RCCGGY	2 cut(s)	461, 527
Bse1I	ACTGG	2 cut(s)	907, 919
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	458
BseCI	ATCGAT	1 cut(s)	671
BseDI	CCNNGG	4 cut(s)	514, 798, 882, 1081
BseGI	GGATG	6 cut(s)	89, 210, 297, 393, 892, 1077
BseLI	CCNNNNNNNGG	2 cut(s)	545, 691
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	3 cut(s)	93, 96, 108
BseNI	ACTGG	2 cut(s)	907, 919
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	43, 1034
Bsh1236I	CGCG	1 cut(s)	759
BshFI	GGCC	4 cut(s)	296, 348, 461, 695
BshVI	ATCGAT	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	3 cut(s)	462, 528, 702
BslFI	GGGAC	2 cut(s)	368, 746
BslI	CCNNNNNNNGG	2 cut(s)	545, 691
BsmAI	GTCTC	2 cut(s)	437, 761
BsmFI	GGGAC	2 cut(s)	368, 746
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	4 cut(s)	296, 348, 461, 695
Bso31I	GGTCTC	1 cut(s)	761
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	661, 732, 744
Bsp19I	CCATGG	2 cut(s)	514, 882
BspACI	CCGC	6 cut(s)	267, 342, 525, 570, 708, 711
BspANI	GGCC	4 cut(s)	296, 348, 461, 695
BspCNI	CTCAG	3 cut(s)	94, 95, 107
BspDI	ATCGAT	1 cut(s)	671
BspFNI	CGCG	1 cut(s)	759
BspLI	GGNNCC	2 cut(s)	455, 715
BspT104I	TTCGAA	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	949
BspTNI	GGTCTC	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	461, 527
BsrGI	TGTACA	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	907, 919
BssAI	RCCGGY	2 cut(s)	461, 527
BssECI	CCNNGG	4 cut(s)	514, 798, 882, 1081
BssMI	GATC	3 cut(s)	661, 732, 744
BssT1I	CCWWGG	3 cut(s)	514, 798, 882
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	3 cut(s)	544, 772, 778
BstAFI	CTTAAG	1 cut(s)	949
BstAUI	TGTACA	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	7 cut(s)	20, 82, 94, 102, 929, 983, 1131
BstDSI	CCRYGG	3 cut(s)	514, 882, 1081
BstF5I	GGATG	6 cut(s)	89, 210, 297, 393, 892, 1077
BstFNI	CGCG	1 cut(s)	759
BstKTI	GATC	3 cut(s)	664, 735, 747
BstMAI	GTCTC	2 cut(s)	437, 761
BstMBI	GATC	3 cut(s)	661, 732, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 717, 994
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	2 cut(s)	367, 1071
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	487
BstUI	CGCG	1 cut(s)	759
BstV1I	GCAGC	2 cut(s)	43, 1034
BstV2I	GAAGAC	2 cut(s)	658, 687
Bsu15I	ATCGAT	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	296, 348, 461, 695
BsuTUI	ATCGAT	1 cut(s)	671
BtgI	CCRYGG	3 cut(s)	514, 882, 1081
BtsCI	GGATG	6 cut(s)	89, 210, 297, 393, 892, 1077
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	718
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr10I	RCCGGY	2 cut(s)	461, 527
Cfr13I	GGNCC	3 cut(s)	155, 454, 693
ClaI	ATCGAT	1 cut(s)	671
CseI	GACGC	1 cut(s)	748
Csp6I	GTAC	3 cut(s)	75, 598, 755
CviAII	CATG	7 cut(s)	284, 364, 450, 515, 586, 883, 1068
CviQI	GTAC	3 cut(s)	75, 598, 755
DdeI	CTNAG	7 cut(s)	20, 82, 94, 102, 929, 983, 1131
DpnI	GATC	3 cut(s)	663, 734, 746
DpnII	GATC	3 cut(s)	661, 732, 744
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
EciI	GGCGGA	1 cut(s)	726
Eco130I	CCWWGG	3 cut(s)	514, 798, 882
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	155, 454
Eco57I	CTGAAG	2 cut(s)	399, 547
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	3 cut(s)	514, 798, 882
EcoT22I	ATGCAT	1 cut(s)	1069
ErhI	CCWWGG	3 cut(s)	514, 798, 882
FaeI	CATG	7 cut(s)	287, 367, 453, 518, 589, 886, 1071
FalI	AAGNNNNNCTT	4 cut(s)	305, 337, 587, 619
FaqI	GGGAC	2 cut(s)	368, 746
FatI	CATG	7 cut(s)	283, 363, 449, 514, 585, 882, 1067
FauI	CCCGC	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	1087
Fnu4HI	GCNGC	3 cut(s)	32, 709, 1048
FokI	GGATG	6 cut(s)	76, 197, 284, 380, 899, 1064
Fsp4HI	GCNGC	3 cut(s)	32, 709, 1048
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	3 cut(s)	32, 709, 1048
GsuI	CTGGAG	1 cut(s)	936
HaeIII	GGCC	4 cut(s)	296, 348, 461, 695
HapII	CCGG	3 cut(s)	462, 528, 702
HgaI	GACGC	1 cut(s)	748
Hin1II	CATG	7 cut(s)	287, 367, 453, 518, 589, 886, 1071
HincII	GTYRAC	2 cut(s)	430, 613
HindII	GTYRAC	2 cut(s)	430, 613
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	5 cut(s)	203, 233, 510, 519, 925
HpaII	CCGG	3 cut(s)	462, 528, 702
HphI	GGTGA	4 cut(s)	137, 256, 691, 742
Hpy166II	GTNNAC	4 cut(s)	430, 484, 613, 1088
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	2 cut(s)	101, 659
Hpy8I	GTNNAC	4 cut(s)	430, 484, 613, 1088
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	3 cut(s)	544, 772, 778
HpyCH4IV	ACGT	2 cut(s)	276, 426
HpyCH4V	TGCA	8 cut(s)	4, 274, 289, 449, 629, 812, 1050, 1067
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 717, 994
HpyF3I	CTNAG	7 cut(s)	20, 82, 94, 102, 929, 983, 1131
HpySE526I	ACGT	2 cut(s)	276, 426
Hsp92II	CATG	7 cut(s)	287, 367, 453, 518, 589, 886, 1071
Kzo9I	GATC	3 cut(s)	661, 732, 744
LmnI	GCTCC	3 cut(s)	103, 141, 713
Lsp1109I	GCAGC	2 cut(s)	43, 1034
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	2 cut(s)	276, 426
MaeIII	GTNAC	3 cut(s)	581, 772, 898
MalI	GATC	3 cut(s)	663, 734, 746
MboI	GATC	3 cut(s)	661, 732, 744
MboII	GAAGA	7 cut(s)	35, 44, 382, 404, 663, 692, 989
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	6 cut(s)	15, 162, 333, 492, 956, 1120
MluI	ACGCGT	1 cut(s)	757
MlyI	GAGTC	2 cut(s)	519, 919
MmeI	TCCRAC	1 cut(s)	532
Mph1103I	ATGCAT	1 cut(s)	1069
MseI	TTAA	3 cut(s)	125, 408, 950
MslI	CAYNNNNRTG	1 cut(s)	564
MspCI	CTTAAG	1 cut(s)	949
MspI	CCGG	3 cut(s)	462, 528, 702
MspR9I	CCNGG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	814
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	3 cut(s)	31, 717, 994
NcoI	CCATGG	2 cut(s)	514, 882
NdeII	GATC	3 cut(s)	661, 732, 744
NlaIII	CATG	7 cut(s)	287, 367, 453, 518, 589, 886, 1071
NlaIV	GGNNCC	2 cut(s)	455, 715
NmeAIII	GCCGAG	2 cut(s)	453, 533
NsiI	ATGCAT	1 cut(s)	1069
NspI	RCATGY	2 cut(s)	367, 1071
NspV	TTCGAA	1 cut(s)	415
OliI	CACNNNNGTG	1 cut(s)	564
PctI	GAATGC	1 cut(s)	814
PfeI	GAWTC	3 cut(s)	203, 233, 519
PkrI	GCNGC	3 cut(s)	33, 710, 1049
PleI	GAGTC	2 cut(s)	518, 919
PpsI	GAGTC	2 cut(s)	518, 919
Ppu21I	YACGTR	1 cut(s)	277
PsiI	TTATAA	1 cut(s)	791
Psp1406I	AACGTT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	2 cut(s)	455, 715
PspPI	GGNCC	3 cut(s)	155, 454, 693
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	76, 599, 756
RsaNI	GTAC	3 cut(s)	75, 598, 755
RseI	CAYNNNNRTG	1 cut(s)	564
SaqAI	TTAA	3 cut(s)	125, 408, 950
SatI	GCNGC	3 cut(s)	32, 709, 1048
Sau3AI	GATC	3 cut(s)	661, 732, 744
Sau96I	GGNCC	3 cut(s)	155, 454, 693
SchI	GAGTC	2 cut(s)	519, 919
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	415
SgrAI	CRCCGGYG	1 cut(s)	527
SinI	GGWCC	2 cut(s)	155, 454
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	949
SmoI	CTYRAG	1 cut(s)	949
Sse9I	AATT	6 cut(s)	15, 162, 333, 492, 956, 1120
SsiI	CCGC	6 cut(s)	267, 342, 525, 570, 708, 711
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	3 cut(s)	514, 798, 882
TaaI	ACNGT	3 cut(s)	544, 772, 778
TaiI	ACGT	2 cut(s)	279, 429
TaqI	TCGA	6 cut(s)	357, 399, 415, 624, 664, 671
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	6 cut(s)	15, 162, 333, 492, 956, 1120
TatI	WGTACW	1 cut(s)	74
TauI	GCSGC	1 cut(s)	711
TfiI	GAWTC	3 cut(s)	203, 233, 519
Tru1I	TTAA	3 cut(s)	125, 408, 950
Tru9I	TTAA	3 cut(s)	125, 408, 950
TscAI	CASTG	1 cut(s)	571
TseI	GCWGC	2 cut(s)	31, 1047
TspDTI	ATGAA	7 cut(s)	78, 344, 382, 859, 1019, 1032, 1066
TspGWI	ACGGA	3 cut(s)	184, 212, 1070
TspRI	CASTG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	949
VpaK11BI	GGWCC	2 cut(s)	155, 454
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	2 cut(s)	367, 1071
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	1087
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.