Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005954

Physical Location & Seq

Genomic Coordinates Reverse (-)

5071884 .. 5073491

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G099500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGGCAATCCCAAGGCTTTCAAATCTCTTGCTGCTTTCAACTCTTTTTGTAGTATCCATTTCTTGGCAAGCTTCAGCTTATTCAGCTCCTGAGAAGTTTGTTCAATGTCTTCTAAACCATTCCCAGCCCTCTCACCCCATCGGTCCAGCAATTTACACTCCCAACAATGCTTCATACTCCTCCGTTTTGGAATCTTACATCCGAAACCTCCGATTCAACACATCTTCAACCCGAAAACCGTTCCTCATCGTCACTGCTTTGCATGAATCTCATGTGCAACTATCTGTCATTTGTGCTCAAGTCCATAACTTGCAGATGAAAATTAGAAGCGGAGGCCACGATTACGAGGGTGTATCGTACGTGGCTGAAGTTCCATTCTTCATCCTCGACATGTTCAATCTTCGATCCATCAAAGTAGACATAAAATCTGAGACTGCATGGGTGCAGGCTGGGGCTACTCTTGGTGAAGTTTACTACAGAATCGCTGAGAGAAGCAAAATTCATGGCTTTCCCGCTGGTGTTTGCCCTACAGTTGGCGTTGGAGGCCACTTCAGTGGCGGTGGATATGGTAATATGATGAGAAAGTACGGCTTGTCAGTTGACAACGTAGTTGATGCACAAATTGTGGATGTGCATGGAAGACTTCTCGATCGAAAAGCCATGGGAGAAGATCTTTTTTGGGCCATCACAGGAGGTGGCGGAGCTAGCTTTGGAGTTGTGATTGCGTACAAGATCAATCTTGTACGTGTTCCTGAAATAGTTACTGTTTTCAGGGTTCCGAGAACCTTGGAACAAAATGCAACAGAGATCGTGTACCGTTGGCAATATGTTGCTGATAAGCTTGATGATGACTTGTTCATCAGGCTAACCATGGATATAGTAAATGGTAGTGGTGGAGAAAACAATAAGACTCTGAGGGCTTCATTTATTGGCATGTTTCTTGGAGACTCTGAGAGGCTTCTCTCTGTGATGAACAAGAGCTTCCCTGAATTGGGACTTAAGCAATCTGATTGCATGGAAATGAGCTGGGTTGAATCTACCCTTTTCTGGACAAGCTTCCCAAATGGGACAGCTCCTGAAGCTTTGCTTTCTAGAATACCTCAAGTACTTACCCACTTGAAGAGGAAATCAGACTACGTCAAGAAACCAATTCCGAAAGCTGGCTTGAAGTGGATTTTTCAGAAAATGATAGAACTTGAGGCTCCAATGTTGACCTTTAACCCCTATGGTGGAAGAATGGGTGAGATTTCGGCATCTGCAACTCCGTTTCCTCATAGAGCTGGGAATCTTTGGAAGGTTCAGTACGCAACAAACTGGGACACAGAAGGGAGTGAGGCATCTGAATACTATATTGATTTGACAAGGAAGCTCCACATGTACATGACTCCTTTTGTTTCCAAGAATCCAAGGGAAGCCTTTTTCAACTATAAAGATCTTGACATTGGGATCAACCATAATGCCAATAGCAAGGCAAGCTATTTGGAAGGAAGAGTTTATGGTATCAAGTACTTCAAGGATAATTTCGATCGGTTGGTGCATGTTAAGACCAAGGTCGATCCAAAGAATTTCTTTAGGAATGAACAAAGTATCCCAACTCTTCCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

536

Amino Acids

60.19

Weight (kDa)

8.93

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30700
fragaria_vesca	FvH4_3g11300 FvH4_3g11330
malus_domestica	MD05G1266000.v1.1 MD05G1266200.v1.1 MD05G1266400.v1.1 MD05G1266900.v1.1
prunus_persica	Prupe.1G171200_v2.0.a1 Prupe.4G099500_v2.0.a1 Prupe.7G051400_v2.0.a1
pyrus_communis	pycom05g25010 pycom05g25020
rosa_chinensis	RchiOBHm_Chr5g0018191 RchiOBHm_Chr5g0018231 RchiOBHm_Chr5g0018281
rosa_laevigata	RLG00000012618 RLG00000032345 RLG00000032346 RLG00000032347
rosa_multiflora	Rmu_sc0008158.1_g000003 Rmu_sc0012569.1_g000002 Rmu_sc0013020.1_g000006 Rmu_sc0018521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059470
rosa_rugosa	Rorug05G0041100
rosa_wichuraiana	Rw5G011710 Rw5G011720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	4 cut(s)	330, 513, 558, 699
AclWI	GGATC	3 cut(s)	399, 1454, 1550
AcsI	RAATTY	2 cut(s)	498, 1564
AcuI	CTGAAG	4 cut(s)	57, 387, 535, 1098
AfaI	GTAC	9 cut(s)	359, 587, 728, 744, 815, 1107, 1304, 1379, 1508
AfiI	CCNNNNNNNGG	7 cut(s)	63, 533, 991, 992, 1047, 1160, 1229
AflII	CTTAAG	1 cut(s)	998
AflIII	ACRYGT	3 cut(s)	390, 745, 1374
AleI	CACNNNNGTG	1 cut(s)	552
AloI	GAACNNNNNNTCC	2 cut(s)	1572, 1604
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	2 cut(s)	425, 939
AlwI	GGATC	3 cut(s)	399, 1454, 1550
AlwNI	CAGNNNCTG	2 cut(s)	89, 1076
AoxI	GGCC	3 cut(s)	334, 544, 681
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	2 cut(s)	498, 1564
AspS9I	GGNCC	2 cut(s)	143, 681
AsuHPI	GGTGA	3 cut(s)	125, 476, 1253
AsuNHI	GCTAGC	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	1286, 1318
BbsI	GAAGAC	2 cut(s)	101, 646
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	3 cut(s)	146, 416, 692
BceAI	ACGGC	1 cut(s)	604
BciVI	GTATCC	2 cut(s)	64, 1598
BcoDI	GTCTC	2 cut(s)	425, 939
BfaI	CTAG	3 cut(s)	705, 1092, 1606
BfmI	CTRYAG	2 cut(s)	475, 528
BfrI	CTTAAG	1 cut(s)	998
BfuI	GTATCC	2 cut(s)	64, 1598
BglII	AGATCT	2 cut(s)	670, 1432
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmcAI	AGTACT	2 cut(s)	1107, 1508
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	143, 681
BmiI	GGNNCC	2 cut(s)	777, 1203
BmrI	ACTGGG	1 cut(s)	1324
BmsI	GCATC	3 cut(s)	604, 1262, 1346
BmtI	GCTAGC	1 cut(s)	708
BmuI	ACTGGG	1 cut(s)	1324
BoxI	GACNNNNGTC	1 cut(s)	1550
BpiI	GAAGAC	2 cut(s)	101, 646
BpuEI	CTTGAG	3 cut(s)	282, 1086, 1217
BsaAI	YACGTR	2 cut(s)	361, 746
BsaJI	CCNNGG	6 cut(s)	11, 660, 786, 870, 1406, 1548
Bsc4I	CCNNNNNNNGG	7 cut(s)	63, 533, 991, 992, 1047, 1160, 1229
Bse1I	ACTGG	1 cut(s)	1319
BseDI	CCNNGG	6 cut(s)	11, 660, 786, 870, 1406, 1548
BseGI	GGATG	3 cut(s)	198, 381, 634
BseLI	CCNNNNNNNGG	7 cut(s)	63, 533, 991, 992, 1047, 1160, 1229
BseMII	CTCAG	5 cut(s)	81, 420, 477, 905, 942
BseNI	ACTGG	1 cut(s)	1319
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	18
BseYI	CCCAGC	4 cut(s)	123, 449, 1026, 1280
BsgI	GTGCAG	1 cut(s)	464
Bsh1285I	CGRYCG	2 cut(s)	652, 1528
BshFI	GGCC	3 cut(s)	336, 546, 683
BsiEI	CGRYCG	2 cut(s)	652, 1528
BsiHKAI	GWGCWC	1 cut(s)	298
BsiWI	CGTACG	1 cut(s)	357
BslFI	GGGAC	3 cut(s)	1008, 1081, 1331
BslI	CCNNNNNNNGG	7 cut(s)	63, 533, 991, 992, 1047, 1160, 1229
BsmAI	GTCTC	2 cut(s)	425, 939
BsmFI	GGGAC	3 cut(s)	1008, 1081, 1331
BsnI	GGCC	3 cut(s)	336, 546, 683
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	1377
Bsp143I	GATC	9 cut(s)	404, 649, 670, 732, 807, 1432, 1446, 1525, 1555
Bsp19I	CCATGG	2 cut(s)	660, 870
BspACI	CCGC	4 cut(s)	330, 513, 558, 699
BspANI	GGCC	3 cut(s)	336, 546, 683
BspCNI	CTCAG	5 cut(s)	82, 421, 478, 906, 943
BspLI	GGNNCC	2 cut(s)	777, 1203
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	3 cut(s)	399, 1454, 1550
BspTI	CTTAAG	1 cut(s)	998
BsrGI	TGTACA	1 cut(s)	1377
BsrI	ACTGG	1 cut(s)	1319
BssECI	CCNNGG	6 cut(s)	11, 660, 786, 870, 1406, 1548
BssMI	GATC	9 cut(s)	404, 649, 670, 732, 807, 1432, 1446, 1525, 1555
BssT1I	CCWWGG	6 cut(s)	11, 660, 786, 870, 1406, 1548
Bst4CI	ACNGT	4 cut(s)	240, 532, 766, 818
Bst6I	CTCTTC	3 cut(s)	1115, 1483, 1602
BstAFI	CTTAAG	1 cut(s)	998
BstAUI	TGTACA	1 cut(s)	1377
BstBAI	YACGTR	2 cut(s)	361, 746
BstC8I	GCNNGC	5 cut(s)	69, 447, 706, 1162, 1474
BstDEI	CTNAG	5 cut(s)	90, 429, 486, 914, 951
BstDSI	CCRYGG	2 cut(s)	660, 870
BstF5I	GGATG	3 cut(s)	198, 381, 634
BstKTI	GATC	9 cut(s)	407, 652, 673, 735, 810, 1435, 1449, 1528, 1558
BstMAI	GTCTC	2 cut(s)	425, 939
BstMBI	GATC	9 cut(s)	404, 649, 670, 732, 807, 1432, 1446, 1525, 1555
BstMCI	CGRYCG	2 cut(s)	652, 1528
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 543, 705, 1079, 1473
BstNSI	RCATGY	4 cut(s)	394, 937, 1378, 1541
BstPAI	GACNNNNGTC	1 cut(s)	1550
BstSFI	CTRYAG	2 cut(s)	475, 528
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	2 cut(s)	101, 646
BstX2I	RGATCY	2 cut(s)	670, 1432
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	2 cut(s)	670, 1432
BsuI	GTATCC	2 cut(s)	64, 1598
BsuRI	GGCC	3 cut(s)	336, 546, 683
BtgI	CCRYGG	2 cut(s)	660, 870
BtsCI	GGATG	3 cut(s)	198, 381, 634
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	252, 559
Cac8I	GCNNGC	5 cut(s)	69, 447, 706, 1162, 1474
CaiI	CAGNNNCTG	2 cut(s)	89, 1076
Cfr13I	GGNCC	2 cut(s)	143, 681
Csp6I	GTAC	9 cut(s)	358, 586, 727, 743, 814, 1106, 1303, 1378, 1507
CviQI	GTAC	9 cut(s)	358, 586, 727, 743, 814, 1106, 1303, 1378, 1507
DdeI	CTNAG	5 cut(s)	90, 429, 486, 914, 951
DpnI	GATC	9 cut(s)	406, 651, 672, 734, 809, 1434, 1448, 1527, 1557
DpnII	GATC	9 cut(s)	404, 649, 670, 732, 807, 1432, 1446, 1525, 1555
Eam1104I	CTCTTC	3 cut(s)	1115, 1483, 1602
EarI	CTCTTC	3 cut(s)	1115, 1483, 1602
EciI	GGCGGA	1 cut(s)	714
Eco130I	CCWWGG	6 cut(s)	11, 660, 786, 870, 1406, 1548
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	4 cut(s)	57, 387, 535, 1098
EcoT14I	CCWWGG	6 cut(s)	11, 660, 786, 870, 1406, 1548
ErhI	CCWWGG	6 cut(s)	11, 660, 786, 870, 1406, 1548
FalI	AAGNNNNNCTT	6 cut(s)	575, 607, 1071, 1103, 1553, 1585
FaqI	GGGAC	3 cut(s)	1008, 1081, 1331
FauI	CCCGC	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	3 cut(s)	185, 368, 641
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	3 cut(s)	705, 1092, 1606
GluI	GCNGC	1 cut(s)	32
GsaI	CCCAGC	4 cut(s)	127, 453, 1030, 1284
HaeIII	GGCC	3 cut(s)	336, 546, 683
HincII	GTYRAC	2 cut(s)	601, 1212
HindII	GTYRAC	2 cut(s)	601, 1212
HindIII	AAGCTT	4 cut(s)	69, 839, 1054, 1080
HphI	GGTGA	3 cut(s)	125, 476, 1253
Hpy166II	GTNNAC	5 cut(s)	418, 472, 601, 814, 1212
Hpy188III	TCNNGA	8 cut(s)	89, 647, 752, 1048, 1076, 1092, 1141, 1436
Hpy8I	GTNNAC	5 cut(s)	418, 472, 601, 814, 1212
HpyAV	CCTTC	3 cut(s)	1288, 1319, 1478
HpyCH4III	ACNGT	4 cut(s)	240, 532, 766, 818
HpyCH4IV	ACGT	4 cut(s)	360, 606, 745, 1137
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 543, 705, 1079, 1473
HpyF3I	CTNAG	5 cut(s)	90, 429, 486, 914, 951
HpySE526I	ACGT	4 cut(s)	360, 606, 745, 1137
Kzo9I	GATC	9 cut(s)	404, 649, 670, 732, 807, 1432, 1446, 1525, 1555
LmnI	GCTCC	5 cut(s)	91, 701, 1078, 1207, 1374
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	3 cut(s)	604, 1262, 1346
MaeI	CTAG	3 cut(s)	705, 1092, 1606
MaeII	ACGT	4 cut(s)	360, 606, 745, 1137
MaeIII	GTNAC	2 cut(s)	250, 760
MalI	GATC	9 cut(s)	406, 651, 672, 734, 809, 1434, 1448, 1527, 1557
MboI	GATC	9 cut(s)	404, 649, 670, 732, 807, 1432, 1446, 1525, 1555
MflI	RGATCY	2 cut(s)	670, 1432
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	8 cut(s)	150, 321, 498, 621, 989, 1149, 1519, 1564
MlyI	GAGTC	3 cut(s)	904, 941, 1378
MmeI	TCCRAC	1 cut(s)	520
MseI	TTAA	3 cut(s)	999, 1218, 1542
MslI	CAYNNNNRTG	3 cut(s)	552, 1019, 1379
MspA1I	CMGCKG	1 cut(s)	515
MspCI	CTTAAG	1 cut(s)	998
MwoI	GCNNNNNNNGC	5 cut(s)	83, 543, 705, 1079, 1473
NcoI	CCATGG	2 cut(s)	660, 870
NdeII	GATC	9 cut(s)	404, 649, 670, 732, 807, 1432, 1446, 1525, 1555
NheI	GCTAGC	1 cut(s)	704
NlaIV	GGNNCC	2 cut(s)	777, 1203
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	4 cut(s)	394, 937, 1378, 1541
OliI	CACNNNNGTG	1 cut(s)	552
PciI	ACATGT	2 cut(s)	390, 1374
PfeI	GAWTC	7 cut(s)	191, 213, 266, 480, 1034, 1285, 1402
Pfl23II	CGTACG	1 cut(s)	357
PflFI	GACNNNGTC	1 cut(s)	1136
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	33
Ple19I	CGATCG	2 cut(s)	652, 1528
PleI	GAGTC	3 cut(s)	904, 941, 1378
PpsI	GAGTC	3 cut(s)	904, 941, 1378
Ppu21I	YACGTR	2 cut(s)	361, 746
PscI	ACATGT	2 cut(s)	390, 1374
PshAI	GACNNNNGTC	1 cut(s)	1550
PspFI	CCCAGC	4 cut(s)	123, 449, 1026, 1280
PspLI	CGTACG	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	777, 1203
PspPI	GGNCC	2 cut(s)	143, 681
PstNI	CAGNNNCTG	2 cut(s)	89, 1076
PsuI	RGATCY	2 cut(s)	670, 1432
PsyI	GACNNNGTC	1 cut(s)	1136
PvuI	CGATCG	2 cut(s)	652, 1528
RsaI	GTAC	9 cut(s)	359, 587, 728, 744, 815, 1107, 1304, 1379, 1508
RsaNI	GTAC	9 cut(s)	358, 586, 727, 743, 814, 1106, 1303, 1378, 1507
RseI	CAYNNNNRTG	3 cut(s)	552, 1019, 1379
SaqAI	TTAA	3 cut(s)	999, 1218, 1542
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	9 cut(s)	404, 649, 670, 732, 807, 1432, 1446, 1525, 1555
Sau96I	GGNCC	2 cut(s)	143, 681
ScaI	AGTACT	2 cut(s)	1107, 1508
SchI	GAGTC	3 cut(s)	904, 941, 1378
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	3 cut(s)	604, 1262, 1346
SfcI	CTRYAG	2 cut(s)	475, 528
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	3 cut(s)	552, 1019, 1379
SmlI	CTYRAG	4 cut(s)	297, 998, 1101, 1196
SmoI	CTYRAG	4 cut(s)	297, 998, 1101, 1196
Sse9I	AATT	8 cut(s)	150, 321, 498, 621, 989, 1149, 1519, 1564
SsiI	CCGC	4 cut(s)	330, 513, 558, 699
SspMI	CTAG	3 cut(s)	705, 1092, 1606
StyI	CCWWGG	6 cut(s)	11, 660, 786, 870, 1406, 1548
TaaI	ACNGT	4 cut(s)	240, 532, 766, 818
TaiI	ACGT	4 cut(s)	363, 609, 748, 1140
TaqI	TCGA	6 cut(s)	387, 403, 648, 652, 1524, 1554
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	8 cut(s)	150, 321, 498, 621, 989, 1149, 1519, 1564
TatI	WGTACW	3 cut(s)	1105, 1377, 1506
TfiI	GAWTC	7 cut(s)	191, 213, 266, 480, 1034, 1285, 1402
Tru1I	TTAA	3 cut(s)	999, 1218, 1542
Tru9I	TTAA	3 cut(s)	999, 1218, 1542
TscAI	CASTG	2 cut(s)	259, 559
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	9 cut(s)	162, 279, 332, 370, 491, 847, 912, 986, 1593
TspGWI	ACGGA	2 cut(s)	172, 1254
TspRI	CASTG	2 cut(s)	259, 559
Tth111I	GACNNNGTC	1 cut(s)	1136
Van91I	CCANNNNNTGG	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	998
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	498, 1564
XbaI	TCTAGA	1 cut(s)	1091
XceI	RCATGY	4 cut(s)	394, 937, 1378, 1541
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	3 cut(s)	705, 1092, 1606
ZrmI	AGTACT	2 cut(s)	1107, 1508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.