AT1G31220

phosphoribosylglycinamide formyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013535
Physical Location & Seq
Forward (+)
11156698 .. 11158683
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31220.1

Sequence Viewer

Length: 879 bp
ATGGAATCACGGGTTTTGTTCTCTAGTCAATTCAACTTCCCGGTGAATTCACCGTTTAAGACCCGTGAAACCTCGATTGCTCCGCTCACACCTTCCCGGAATGTTCTCTCCTTCTCTTTCCGTAGTCCCGCAGAGAGATGTGCGATGAGGATTGTACCGCTTGTAAAAGCTGCTTCGTCTACTCCACAGATAGTAGCGGAGGTCGATGGTTCGTCTCACGAACCAAGAAGGAAGAAGCTTGCTGTGTTTGTGTCGGGAGGTGGTTCAAATTTCAGGAAGATTCATGAGGGATGCAGTGATGGTTCTGTTAATGGTGATGTTGTTTTGTTGGTCACTAACAAAAAAGATTGTGGAGGTGCTGAGTATGCAAGAAGTAATGGAATTCCTGTTTTAGTATTCCCAAAAGCGAAACGAGAACCATCTGATGGACTCTCTCCTTCAGAACTTGTAGATGTACTAAGGAAATATGGTGTAGACTTTGTTCTTTTAGCTGGATATTTGAAACTTATACCGGTCGAGCTGGTCCAAGCTTTTCCTAAACGGATTCTAAATATTCATCCTGCTCTTCTTCCGGCTTTCGGAGGCAAAGGTCTTTATGGTATAAAAGTGCATAAAGCTGTTCTAGAATCGGGAGCTAGATATTCGGGTCCGACAATTCACTTCGTCAATGAGGAGTACGATACAGGTCGGATACTTGCTCAAAGTGCAGTCCGTGTGATTGCTAATGATACACCAGAAGAATTGGCCAAAAGGGTTCTTCATGAGGAACACAAACTGTATGTCGAGGTGGTGGGTGCGATTTGCGAAGAGCGGATTAAATGGAGAGAAGACGGTGTCCCTCTCATTCAAAACAAACAAAACCCTGACGAGTACTATTAG

Protein Analysis

292

Amino Acids

32.17

Weight (kDa)

8.93

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 78 - 264 2.8e-62 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31220
fragaria_vesca FvH4_5g23990
malus_domestica MD03G1153200.v1.1 MD10G1330400.v1.1
prunus_persica Prupe.4G012000_v2.0.a1
pyrus_communis pycom03g10680 pycom10g27980
rosa_chinensis RchiOBHm_Chr7g0213451
rosa_laevigata RLG00000002803
rosa_multiflora Rmu_sc0013012.1_g000010 Rmu_ssc0000262.1_g000002
rosa_roxburghii Rroxscaffold_3G00245870
rosa_rugosa Rorug07G0142400
rosa_samantha Rh7AG274400 Rh7BG269900 Rh7CG293600 Rh7DG281900
rosa_wichuraiana Rw7G023800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 425
AccBSI CCGCTC 2 cut(s) 85, 811
AccI GTMKAC 2 cut(s) 179, 474
AciI CCGC 5 cut(s) 83, 129, 158, 197, 811
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 3 cut(s) 46, 268, 381
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 4 cut(s) 156, 456, 677, 872
AfiI CCNNNNNNNGG 2 cut(s) 425, 578
AgeI ACCGGT 1 cut(s) 511
AgsI TTSAA 4 cut(s) 34, 267, 502, 848
AluBI AGCT 7 cut(s) 170, 238, 491, 520, 530, 617, 635
AluI AGCT 7 cut(s) 170, 238, 491, 520, 530, 617, 635
Alw26I GTCTC 1 cut(s) 219
AoxI GGCC 1 cut(s) 744
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 3 cut(s) 46, 268, 381
ArsI GACNNNNNNTTYG 2 cut(s) 765, 797
AsiGI ACCGGT 1 cut(s) 511
AspS9I GGNCC 2 cut(s) 523, 647
AsuC2I CCSGG 2 cut(s) 41, 97
AsuHPI GGTGA 3 cut(s) 42, 55, 326
AvaII GGWCC 2 cut(s) 523, 647
BalI TGGCCA 1 cut(s) 746
BbsI GAAGAC 1 cut(s) 834
BbvI GCAGC 1 cut(s) 157
BccI CCATC 4 cut(s) 200, 293, 419, 427
BciVI GTATCC 1 cut(s) 684
BcnI CCSGG 2 cut(s) 41, 97
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 3 cut(s) 24, 623, 636
BfuI GTATCC 1 cut(s) 684
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmcAI AGTACT 1 cut(s) 872
Bme1390I CCNGG 2 cut(s) 41, 97
Bme18I GGWCC 2 cut(s) 523, 647
BmgT120I GGNCC 2 cut(s) 523, 647
BmiI GGNNCC 1 cut(s) 648
BmrFI CCNGG 2 cut(s) 41, 97
BmsI GCATC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 834
BpuMI CCSGG 2 cut(s) 41, 97
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 578
Bse118I RCCGGY 1 cut(s) 511
BseGI GGATG 2 cut(s) 296, 556
BseLI CCNNNNNNNGG 2 cut(s) 425, 578
BseMII CTCAG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 686
BseXI GCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 726
Bsh1285I CGRYCG 1 cut(s) 516
BshFI GGCC 1 cut(s) 746
BshTI ACCGGT 1 cut(s) 511
BsiEI CGRYCG 1 cut(s) 516
BsiSI CCGG 4 cut(s) 41, 97, 512, 572
BslFI GGGAC 2 cut(s) 111, 821
BslI CCNNNNNNNGG 2 cut(s) 425, 578
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 2 cut(s) 111, 821
BsnI GGCC 1 cut(s) 746
BspACI CCGC 5 cut(s) 83, 129, 158, 197, 811
BspANI GGCC 1 cut(s) 746
BspCNI CTCAG 1 cut(s) 352
BspHI TCATGA 2 cut(s) 283, 760
BspLI GGNNCC 1 cut(s) 648
BspQI GCTCTTC 2 cut(s) 570, 801
BsrBI CCGCTC 2 cut(s) 85, 811
BsrFI RCCGGY 1 cut(s) 511
BssAI RCCGGY 1 cut(s) 511
Bst4CI ACNGT 3 cut(s) 54, 777, 833
Bst6I CTCTTC 2 cut(s) 570, 801
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 360, 458
BstF5I GGATG 2 cut(s) 296, 556
BstMAI GTCTC 1 cut(s) 219
BstMCI CGRYCG 1 cut(s) 516
BstMWI GCNNNNNNNGC 2 cut(s) 365, 704
BstSCI CCNGG 2 cut(s) 39, 95
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 834
BsuI GTATCC 1 cut(s) 684
BsuRI GGCC 1 cut(s) 746
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 2 cut(s) 296, 556
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 2 cut(s) 283, 760
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 2 cut(s) 523, 647
Csp6I GTAC 4 cut(s) 155, 455, 676, 871
CspAI ACCGGT 1 cut(s) 511
CviAII CATG 2 cut(s) 284, 761
CviJI RGCY 9 cut(s) 170, 238, 491, 520, 530, 575, 617, 635, 746
CviKI_1 RGCY 9 cut(s) 170, 238, 491, 520, 530, 575, 617, 635, 746
CviQI GTAC 4 cut(s) 155, 455, 676, 871
DdeI CTNAG 2 cut(s) 360, 458
EaeI YGGCCR 1 cut(s) 744
Eam1104I CTCTTC 2 cut(s) 570, 801
EarI CTCTTC 2 cut(s) 570, 801
Eco47I GGWCC 2 cut(s) 523, 647
Eco57I CTGAAG 1 cut(s) 423
EcoRI GAATTC 2 cut(s) 46, 381
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 2 cut(s) 287, 764
FaiI YATR 9 cut(s) 285, 366, 468, 509, 597, 602, 612, 762, 780
FaqI GGGAC 2 cut(s) 111, 821
FatI CATG 2 cut(s) 283, 760
FauI CCCGC 1 cut(s) 136
FblI GTMKAC 2 cut(s) 179, 474
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 2 cut(s) 303, 543
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 3 cut(s) 24, 623, 636
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 746
HapII CCGG 4 cut(s) 41, 97, 512, 572
Hin1II CATG 2 cut(s) 287, 764
HindIII AAGCTT 2 cut(s) 236, 528
HinfI GANTC 5 cut(s) 5, 280, 429, 544, 626
HpaII CCGG 4 cut(s) 41, 97, 512, 572
HphI GGTGA 3 cut(s) 42, 55, 326
Hpy166II GTNNAC 2 cut(s) 180, 475
Hpy188I TCNGA 5 cut(s) 424, 442, 581, 651, 690
Hpy188III TCNNGA 7 cut(s) 218, 255, 274, 284, 623, 630, 761
Hpy8I GTNNAC 2 cut(s) 180, 475
HpyAV CCTTC 4 cut(s) 102, 121, 222, 447
HpyCH4III ACNGT 3 cut(s) 54, 777, 833
HpyCH4V TGCA 4 cut(s) 294, 368, 610, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 704
HpyF3I CTNAG 2 cut(s) 360, 458
Hsp92II CATG 2 cut(s) 287, 764
LguI GCTCTTC 2 cut(s) 570, 801
LmnI GCTCC 2 cut(s) 85, 632
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 281
MaeI CTAG 3 cut(s) 24, 623, 636
MaeIII GTNAC 1 cut(s) 331
MbiI CCGCTC 2 cut(s) 85, 811
MboII GAAGA 8 cut(s) 244, 289, 557, 560, 749, 749, 818, 839
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 6 cut(s) 29, 46, 268, 381, 654, 740
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 2 cut(s) 668, 674
Mox20I TGGCCA 1 cut(s) 746
MscI TGGCCA 1 cut(s) 746
MseI TTAA 3 cut(s) 57, 309, 816
Msp20I TGGCCA 1 cut(s) 746
MspI CCGG 4 cut(s) 41, 97, 512, 572
MspR9I CCNGG 2 cut(s) 41, 97
MwoI GCNNNNNNNGC 2 cut(s) 365, 704
NciI CCSGG 2 cut(s) 41, 97
NlaIII CATG 2 cut(s) 287, 764
NlaIV GGNNCC 1 cut(s) 648
NmuCI GTSAC 1 cut(s) 331
PagI TCATGA 2 cut(s) 283, 760
PciSI GCTCTTC 2 cut(s) 570, 801
PfeI GAWTC 4 cut(s) 5, 280, 544, 626
PflFI GACNNNGTC 1 cut(s) 833
PflMI CCANNNNNTGG 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 511
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 648
PspPI GGNCC 2 cut(s) 523, 647
PsrI GAACNNNNNNTAC 2 cut(s) 465, 497
PsyI GACNNNGTC 1 cut(s) 833
RsaI GTAC 4 cut(s) 156, 456, 677, 872
RsaNI GTAC 4 cut(s) 155, 455, 676, 871
SapI GCTCTTC 2 cut(s) 570, 801
SaqAI TTAA 3 cut(s) 57, 309, 816
SatI GCNGC 1 cut(s) 171
Sau96I GGNCC 2 cut(s) 523, 647
ScaI AGTACT 1 cut(s) 872
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 2 cut(s) 41, 97
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 2 cut(s) 523, 647
Sse9I AATT 6 cut(s) 29, 46, 268, 381, 654, 740
SsiI CCGC 5 cut(s) 83, 129, 158, 197, 811
SspI AATATT 1 cut(s) 553
SspMI CTAG 3 cut(s) 24, 623, 636
StyD4I CCNGG 2 cut(s) 39, 95
TaaI ACNGT 3 cut(s) 54, 777, 833
TaqI TCGA 4 cut(s) 74, 204, 516, 783
TasI AATT 6 cut(s) 29, 46, 268, 381, 654, 740
TatI WGTACW 2 cut(s) 454, 870
TfiI GAWTC 4 cut(s) 5, 280, 544, 626
Tru1I TTAA 3 cut(s) 57, 309, 816
Tru9I TTAA 3 cut(s) 57, 309, 816
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 3 cut(s) 272, 545, 749
TspGWI ACGGA 3 cut(s) 110, 556, 701
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 833
Van91I CCANNNNNTGG 1 cut(s) 425
VpaK11BI GGWCC 2 cut(s) 523, 647
XapI RAATTY 3 cut(s) 46, 268, 381
XbaI TCTAGA 1 cut(s) 622
XmiI GTMKAC 2 cut(s) 179, 474
XspI CTAG 3 cut(s) 24, 623, 636
ZrmI AGTACT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.