Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013535

Physical Location & Seq

Genomic Coordinates Reverse (-)

577125 .. 579546

Gene Structure 2422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G012000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAGCTCAGCGTCTGCTTTCTGGGTTTTGCTCAACCCCACCGATTCAAAATACCAAAACCCAAGTCTTTGTAAAATTTCCCCTTTCCTCTTCTTCTGCTTCTTTTGCTCAATCCCAAAAATGGGTCTCCTTCAAAGCTTGCCCTTCTATTTCACAAAGTGCATTGTCTGGGAAGGTATTTCAGTGTAGGAACAGTAGAGAGAGAATTGAGTTCCTTGCTTCTGATAAAGAAGATTTGAGAAGTGGGATTAGACGGAAAAAGCTTGCGGTTTTCGTTTCCGGTGGAGGCTCCAACTTCCGGTCCATTCAAGAAGCATGTCTTCGGGGTTCAATTCATGGAGACATTGTTGTTGTAGTCACAAGTAAACAAGATTGCGGAGGTGCTGACTATGCAAGAGATAAGGGCCTCCCAGTTATATTGTTCCCCAAAACAAAACTTGAGGCTGATGGAATATCTCCAGCTGACCTTGTTGCTACCCTTAGGAGATTTGAGGTTGACTTTGTTCTCCTGGCTGGTTACCTAAAACTTATACCAGCAGAGTTGATACAAGCTTATCCCAGATCCATACTGAACATCCATCCGTCACTTCTTCCAGCATTTGGAGGCAAAGGTAATTATGGGATGAAGGTCCACAAGGCTGTCATTGCTTCTGGATCAAGATACACAGGCCCTACAATACATTTTGTTGATGAGCACTACGACACGGGACGTATCCTTGCTCAAAGAGTTGTCCCTGTGCTTGCCAAGGACACTGCGGAGGAGCTGGCAGCAAGGGTTCTTCGGGAGGAGCATCGCATATATGTGGAAGTGATAACAGCATTATGTGAAGATCGGGTCATTTGGAGGGAGGATGGTGTTCCTATAATCCGGAGCAAAGAAAATCCCAATGAATACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00670 ko01100 ko01110 ko01130 map00230 map00670 map01100 map01110 map01130

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

301

Amino Acids

33.13

Weight (kDa)

9.17

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31220
fragaria_vesca	FvH4_5g23990
malus_domestica	MD03G1153200.v1.1 MD10G1330400.v1.1
prunus_persica	Prupe.4G012000_v2.0.a1
pyrus_communis	pycom03g10680 pycom10g27980
rosa_chinensis	RchiOBHm_Chr7g0213451
rosa_laevigata	RLG00000002803
rosa_multiflora	Rmu_sc0013012.1_g000010 Rmu_ssc0000262.1_g000002
rosa_roxburghii	Rroxscaffold_3G00245870
rosa_rugosa	Rorug07G0142400
rosa_samantha	Rh7AG274400 Rh7BG269900 Rh7CG293600 Rh7DG281900
rosa_wichuraiana	Rw7G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccIII	TCCGGA	1 cut(s)	870
AciI	CCGC	3 cut(s)	269, 378, 758
AclWI	GGATC	2 cut(s)	558, 664
AcsI	RAATTY	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	161
AfiI	CCNNNNNNNGG	4 cut(s)	123, 124, 300, 602
AgsI	TTSAA	4 cut(s)	50, 136, 311, 333
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	7 cut(s)	8, 140, 265, 464, 554, 766, 900
AluI	AGCT	7 cut(s)	8, 140, 265, 464, 554, 766, 900
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	2 cut(s)	133, 336
AlwI	GGATC	2 cut(s)	558, 664
AlwNI	CAGNNNCTG	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	870
AoxI	GGCC	2 cut(s)	406, 670
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	1 cut(s)	77
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
AspS9I	GGNCC	4 cut(s)	303, 406, 631, 671
AvaII	GGWCC	2 cut(s)	303, 631
AxyI	CCTNAGG	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	3 cut(s)	443, 588, 848
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	725
BcoDI	GTCTC	2 cut(s)	133, 336
BfaI	CTAG	1 cut(s)	901
BfuI	GTATCC	1 cut(s)	725
BisI	GCNGC	1 cut(s)	771
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	772
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	2 cut(s)	303, 631
BmgT120I	GGNCC	4 cut(s)	303, 406, 631, 671
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	802
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	747
BsaWI	WCCGGW	3 cut(s)	281, 300, 870
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 124, 300, 602
Bse1I	ACTGG	1 cut(s)	413
Bse21I	CCTNAGG	1 cut(s)	482
Bse3DI	GCAATG	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	747
BseGI	GGATG	4 cut(s)	576, 580, 630, 859
BseLI	CCNNNNNNNGG	4 cut(s)	123, 124, 300, 602
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	776, 803
BseXI	GCAGC	1 cut(s)	782
BshFI	GGCC	2 cut(s)	408, 672
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	3 cut(s)	282, 301, 871
BslFI	GGGAC	2 cut(s)	719, 723
BslI	CCNNNNNNNGG	4 cut(s)	123, 124, 300, 602
BsmAI	GTCTC	2 cut(s)	133, 336
BsmFI	GGGAC	2 cut(s)	719, 723
BsnI	GGCC	2 cut(s)	408, 672
Bso31I	GGTCTC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp13I	TCCGGA	1 cut(s)	870
Bsp143I	GATC	3 cut(s)	563, 656, 832
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	3 cut(s)	269, 378, 758
BspANI	GGCC	2 cut(s)	408, 672
BspCNI	CTCAG	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	870
BspLI	GGNNCC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	558, 664
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	747
BssMI	GATC	3 cut(s)	563, 656, 832
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	142, 267, 744, 768
BstDEI	CTNAG	2 cut(s)	9, 482
BstEII	GGTNACC	1 cut(s)	518
BstF5I	GGATG	4 cut(s)	576, 580, 630, 859
BstKTI	GATC	3 cut(s)	566, 659, 835
BstMAI	GTCTC	2 cut(s)	133, 336
BstMBI	GATC	3 cut(s)	563, 656, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 392, 647
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
Bsu36I	CCTNAGG	1 cut(s)	482
BsuI	GTATCC	1 cut(s)	725
BsuRI	GGCC	2 cut(s)	408, 672
BtgZI	GCGATG	1 cut(s)	779
BtsCI	GGATG	4 cut(s)	576, 580, 630, 859
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	2 cut(s)	191, 753
Cac8I	GCNNGC	4 cut(s)	142, 267, 744, 768
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr13I	GGNCC	4 cut(s)	303, 406, 631, 671
CseI	GACGC	1 cut(s)	2
CviAII	CATG	2 cut(s)	318, 338
DdeI	CTNAG	2 cut(s)	9, 482
DpnI	GATC	3 cut(s)	565, 658, 834
DpnII	GATC	3 cut(s)	563, 656, 832
DraIII	CACNNNGTG	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	303, 631
Eco81I	CCTNAGG	1 cut(s)	482
Eco91I	GGTNACC	1 cut(s)	518
EcoO109I	RGGNCCY	2 cut(s)	406, 671
EcoO65I	GGTNACC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	2 cut(s)	321, 341
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	2 cut(s)	719, 723
FatI	CATG	2 cut(s)	317, 337
Fnu4HI	GCNGC	1 cut(s)	771
FokI	GGATG	4 cut(s)	563, 567, 637, 866
Fsp4HI	GCNGC	1 cut(s)	771
FspBI	CTAG	1 cut(s)	901
GluI	GCNGC	1 cut(s)	771
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	408, 672
HapII	CCGG	3 cut(s)	282, 301, 871
HgaI	GACGC	1 cut(s)	2
Hin1II	CATG	2 cut(s)	321, 341
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	3 cut(s)	138, 263, 552
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	3 cut(s)	282, 301, 871
Hpy166II	GTNNAC	3 cut(s)	368, 499, 634
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	5 cut(s)	311, 654, 660, 785, 871
Hpy8I	GTNNAC	3 cut(s)	368, 499, 634
HpyAV	CCTTC	4 cut(s)	142, 156, 169, 622
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	2 cut(s)	164, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 392, 647
HpyF3I	CTNAG	2 cut(s)	9, 482
HpySE526I	ACGT	1 cut(s)	712
Hsp92II	CATG	2 cut(s)	321, 341
Kpn2I	TCCGGA	1 cut(s)	870
Kzo9I	GATC	3 cut(s)	563, 656, 832
LmnI	GCTCC	4 cut(s)	296, 763, 790, 873
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	1 cut(s)	901
MaeII	ACGT	1 cut(s)	712
MaeIII	GTNAC	3 cut(s)	358, 518, 585
MalI	GATC	3 cut(s)	565, 658, 834
MboI	GATC	3 cut(s)	563, 656, 832
MboII	GAAGA	7 cut(s)	84, 87, 245, 314, 584, 773, 842
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	4 cut(s)	77, 207, 333, 616
MmeI	TCCRAC	1 cut(s)	318
MroI	TCCGGA	1 cut(s)	870
MslI	CAYNNNNRTG	1 cut(s)	803
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	3 cut(s)	282, 301, 871
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	107, 392, 647
NdeII	GATC	3 cut(s)	563, 656, 832
NlaIII	CATG	2 cut(s)	321, 341
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	2 cut(s)	358, 585
NspI	RCATGY	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	46
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	1 cut(s)	772
Psp6I	CCWGG	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	4 cut(s)	303, 406, 631, 671
PstNI	CAGNNNCTG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	803
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	3 cut(s)	563, 656, 832
Sau96I	GGNCC	4 cut(s)	303, 406, 631, 671
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	1 cut(s)	802
SinI	GGWCC	2 cut(s)	303, 631
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	4 cut(s)	77, 207, 333, 616
SsiI	CCGC	3 cut(s)	269, 378, 758
SspMI	CTAG	1 cut(s)	901
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	715
TasI	AATT	4 cut(s)	77, 207, 333, 616
TfiI	GAWTC	1 cut(s)	46
TscAI	CASTG	2 cut(s)	191, 760
TseFI	GTSAC	2 cut(s)	358, 585
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	2 cut(s)	358, 585
TspDTI	ATGAA	2 cut(s)	326, 641
TspGWI	ACGGA	2 cut(s)	271, 573
TspRI	CASTG	2 cut(s)	191, 760
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	303, 631
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	321
XspI	CTAG	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.