Rh7CG293600

Phosphoribosylglycinamide formyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013535
Physical Location & Seq
Reverse (-)
29986106 .. 29992280
6175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG293600.1

Sequence Viewer

Length: 852 bp
ATGGAAGTTCAGCATCTGCTTTCTGGGTTTTGCTCAACCCCAATGGTGCAAAACCCCAAGACCCAATTCTTTGCAAGATTGCCCTCTTCTTCTTCTGCTTCTACATATTTTGCTCAATCCCACAAATGGGTCTCCTTCAAGGCCTGCCCTTGTAATTCACAGAGGGCATTGTCTAGGATAGAGTGTGGGAGCAGCACAGAGAGAAGTGGGGTCATTGCTTCTTCTGATAGTGAAGATTTGGGGAATGGGATTAGGCGGAAAAAGCTTGCGGTTTTTGTGTCTGGTGGAGGCTCCAATTTTCGGTCCATTCATGAAGCCTGCATTCGGGGTTCAATTCATGGAGACATTGTTGTTTTAGTTACTAACAAACAAGGTTGTGGAGGTGCTGACTATGCAAGAGATAAGGGCCTCCCAGTTGTGCTGTTTCCCAAAACAAAAAAAGAGCCTGATGGAATATCTCCAATTGACCTCGTTGCTGTCCTTAGGGGACTTGAGGTTGACTTTGTTCTTCTGGCTGGCTACCTACAACTTATACCGGTAGAGTTGATTCAAGCTTATCCCAGATCCATAGTGAACATCCATCCATCACTTCTTCCTGCATTTGGAGGCAAAGGTAACTATGGAATGAGGGTTCACAAAGCAGTCATTGCTTCTGGAGCAAGATACACAGGCCCTACAATACATTTTGTTGATGAGCATTATGACACTGGACGTATCCTGGCTCAAAGAGTTGTCCCAGTGCGTGCTAATGACACTGCTGAGGAGCTGGCTGCGAGGGTCCTTAGGGAGGTAATGCAATTTTATGTTTCACTGATATTTGTGATTTGTTTATTCATCTGTTCCACTCACTAA

Protein Analysis

283

Amino Acids

30.81

Weight (kDa)

9.02

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 87 - 270 1.8e-51 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31220
fragaria_vesca FvH4_5g23990
malus_domestica MD03G1153200.v1.1 MD10G1330400.v1.1
prunus_persica Prupe.4G012000_v2.0.a1
pyrus_communis pycom03g10680 pycom10g27980
rosa_chinensis RchiOBHm_Chr7g0213451
rosa_laevigata RLG00000002803
rosa_multiflora Rmu_sc0013012.1_g000010 Rmu_ssc0000262.1_g000002
rosa_roxburghii Rroxscaffold_3G00245870
rosa_rugosa Rorug07G0142400
rosa_samantha Rh7AG274400 Rh7BG269900 Rh7CG293600 Rh7DG281900
rosa_wichuraiana Rw7G023800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 256, 269
AclWI GGATC 1 cut(s) 558
AfiI CCNNNNNNNGG 6 cut(s) 126, 127, 300, 324, 602, 787
AgeI ACCGGT 1 cut(s) 535
AgsI TTSAA 3 cut(s) 139, 333, 551
AjnI CCWGG 1 cut(s) 717
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
AluBI AGCT 3 cut(s) 265, 554, 766
AluI AGCT 3 cut(s) 265, 554, 766
Alw26I GTCTC 2 cut(s) 136, 336
AlwI GGATC 1 cut(s) 558
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 3 cut(s) 141, 406, 670
ApeKI GCWGC 2 cut(s) 192, 770
AsiGI ACCGGT 1 cut(s) 535
AspS9I GGNCC 4 cut(s) 303, 406, 671, 778
AvaII GGWCC 2 cut(s) 303, 778
AxyI CCTNAGG 2 cut(s) 482, 782
BbvCI CCTCAGC 1 cut(s) 759
BbvI GCAGC 2 cut(s) 204, 757
BccI CCATC 3 cut(s) 443, 588, 592
BciT130I CCWGG 1 cut(s) 719
BciVI GTATCC 1 cut(s) 725
BcoDI GTCTC 2 cut(s) 136, 336
BfaI CTAG 1 cut(s) 174
BfuI GTATCC 1 cut(s) 725
BisI GCNGC 2 cut(s) 193, 771
BlsI GCNGC 2 cut(s) 194, 772
Bme1390I CCNGG 1 cut(s) 719
Bme18I GGWCC 2 cut(s) 303, 778
BmgT120I GGNCC 4 cut(s) 303, 406, 671, 778
BmiI GGNNCC 2 cut(s) 292, 779
BmrFI CCNGG 1 cut(s) 719
BmrI ACTGGG 2 cut(s) 407, 731
BmsI GCATC 1 cut(s) 22
BmuI ACTGGG 2 cut(s) 407, 731
BpmI CTGGAG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 6 cut(s) 126, 127, 300, 324, 602, 787
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 3 cut(s) 413, 712, 737
Bse21I CCTNAGG 2 cut(s) 482, 782
Bse3DI GCAATG 2 cut(s) 213, 645
BseBI CCWGG 1 cut(s) 719
BseGI GGATG 2 cut(s) 576, 580
BseLI CCNNNNNNNGG 6 cut(s) 126, 127, 300, 324, 602, 787
BseMI GCAATG 2 cut(s) 213, 645
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 3 cut(s) 413, 712, 737
BseRI GAGGAG 1 cut(s) 776
BseXI GCAGC 2 cut(s) 204, 757
BshFI GGCC 3 cut(s) 143, 408, 672
BshTI ACCGGT 1 cut(s) 535
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 2 cut(s) 501, 719
BslI CCNNNNNNNGG 6 cut(s) 126, 127, 300, 324, 602, 787
BsmAI GTCTC 2 cut(s) 136, 336
BsmFI GGGAC 2 cut(s) 501, 719
BsmI GAATGC 1 cut(s) 321
BsnI GGCC 3 cut(s) 143, 408, 672
Bso31I GGTCTC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 563
BspACI CCGC 2 cut(s) 256, 269
BspANI GGCC 3 cut(s) 143, 408, 672
BspCNI CTCAG 1 cut(s) 751
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 292, 779
BspPI GGATC 1 cut(s) 558
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 2 cut(s) 213, 645
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 3 cut(s) 413, 712, 737
BssAI RCCGGY 1 cut(s) 535
BssMI GATC 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 719
Bst6I CTCTTC 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 6 cut(s) 145, 267, 319, 517, 744, 768
BstDEI CTNAG 3 cut(s) 482, 759, 782
BstENI CCTNNNNNAGG 1 cut(s) 785
BstF5I GGATG 2 cut(s) 576, 580
BstKTI GATC 1 cut(s) 566
BstMAI GTCTC 2 cut(s) 136, 336
BstMBI GATC 1 cut(s) 563
BstMWI GCNNNNNNNGC 4 cut(s) 262, 392, 647, 656
BstNI CCWGG 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 717
BstV1I GCAGC 2 cut(s) 204, 757
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
Bsu36I CCTNAGG 2 cut(s) 482, 782
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 3 cut(s) 143, 408, 672
BtsCI GGATG 2 cut(s) 576, 580
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 4 cut(s) 705, 744, 753, 809
Cac8I GCNNGC 6 cut(s) 145, 267, 319, 517, 744, 768
CaiI CAGNNNCTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 4 cut(s) 303, 406, 671, 778
CspAI ACCGGT 1 cut(s) 535
CviAII CATG 2 cut(s) 311, 338
DdeI CTNAG 3 cut(s) 482, 759, 782
DpnI GATC 1 cut(s) 565
DpnII GATC 1 cut(s) 563
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 303, 778
Eco81I CCTNAGG 2 cut(s) 482, 782
EcoNI CCTNNNNNAGG 1 cut(s) 785
EcoO109I RGGNCCY 3 cut(s) 406, 671, 778
EcoRII CCWGG 1 cut(s) 717
FaeI CATG 2 cut(s) 314, 341
FaiI YATR 9 cut(s) 106, 312, 339, 393, 533, 569, 621, 702, 804
FaqI GGGAC 2 cut(s) 501, 719
FatI CATG 2 cut(s) 310, 337
Fnu4HI GCNGC 2 cut(s) 193, 771
FokI GGATG 2 cut(s) 563, 567
Fsp4HI GCNGC 2 cut(s) 193, 771
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 193, 771
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 3 cut(s) 143, 408, 672
HapII CCGG 1 cut(s) 536
Hin1II CATG 2 cut(s) 314, 341
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 2 cut(s) 263, 552
HinfI GANTC 1 cut(s) 547
HpaII CCGG 1 cut(s) 536
Hpy166II GTNNAC 3 cut(s) 499, 574, 634
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 311, 654
Hpy8I GTNNAC 3 cut(s) 499, 574, 634
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 6 cut(s) 49, 74, 321, 395, 599, 796
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 392, 647, 656
HpyF3I CTNAG 3 cut(s) 482, 759, 782
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 2 cut(s) 314, 341
Kzo9I GATC 1 cut(s) 563
LmnI GCTCC 4 cut(s) 189, 296, 656, 763
Lsp1109I GCAGC 2 cut(s) 204, 757
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 2 cut(s) 358, 614
MalI GATC 1 cut(s) 565
MboI GATC 1 cut(s) 563
MboII GAAGA 7 cut(s) 78, 81, 84, 213, 245, 500, 584
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 563
MluCI AATT 6 cut(s) 65, 154, 295, 333, 462, 797
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 719
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 321
MvaI CCWGG 1 cut(s) 719
MwoI GCNNNNNNNGC 4 cut(s) 262, 392, 647, 656
NdeII GATC 1 cut(s) 563
NlaIII CATG 2 cut(s) 314, 341
NlaIV GGNNCC 2 cut(s) 292, 779
PagI TCATGA 1 cut(s) 310
PceI AGGCCT 1 cut(s) 143
PctI GAATGC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 547
PinAI ACCGGT 1 cut(s) 535
PkrI GCNGC 2 cut(s) 194, 772
PpuMI RGGWCCY 1 cut(s) 778
Psp5II RGGWCCY 1 cut(s) 778
Psp6I CCWGG 1 cut(s) 717
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 2 cut(s) 292, 779
PspPI GGNCC 4 cut(s) 303, 406, 671, 778
PspPPI RGGWCCY 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 563
SatI GCNGC 2 cut(s) 193, 771
Sau3AI GATC 1 cut(s) 563
Sau96I GGNCC 4 cut(s) 303, 406, 671, 778
ScrFI CCNGG 1 cut(s) 719
SfaNI GCATC 1 cut(s) 22
SinI GGWCC 2 cut(s) 303, 778
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 6 cut(s) 65, 154, 295, 333, 462, 797
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 2 cut(s) 256, 269
SspMI CTAG 1 cut(s) 174
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 717
TaiI ACGT 1 cut(s) 715
TaqII GACCGA 1 cut(s) 291
TasI AATT 6 cut(s) 65, 154, 295, 333, 462, 797
TfiI GAWTC 1 cut(s) 547
TscAI CASTG 4 cut(s) 712, 744, 760, 816
TseI GCWGC 2 cut(s) 192, 770
TspDTI ATGAA 4 cut(s) 299, 326, 327, 823
TspRI CASTG 4 cut(s) 712, 744, 760, 816
VpaK11BI GGWCC 2 cut(s) 303, 778
XagI CCTNNNNNAGG 1 cut(s) 785
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.