RchiOBHm_Chr7g0213451

Phosphoribosylglycinamide formyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013535
Physical Location & Seq
Reverse (-)
30581120 .. 30585385
4266 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19106

Sequence Viewer

Length: 906 bp
ATGGAAGTTCAGCATCTGCTTTCTGGGTTTTGCTCAACCCCAATGGTGCAAAACCCCAAGACCCAATTCTTTGCAAGATTGCCCTCTTCTTCTTCTACTGCTTCCACATATTTTGGTCAATCCCACAAATGGGTCTCCTTCAAGGCCTGCCCTTGTAATTCACAGAGGGCATTGTCTAGGATAGAGTGTAGGAGCAGCACAGAGAGAAGTGGGGTCATTGCTTCTTCTGATAGTGAAGATTTGGGGAATGGGATTAGGCGGAAAAAGCTTGCGGTTTTTGTGTCTGGTGGAGGCTCCAATTTTCGGTCCATTCATGAAGCCTGCATTCGGGGTTCAATTCATGGAGACATTGTTGTTTTAGTTACTAATAAACAAGGTTGTGGAGGTGCTGACTATGCAAGAGATAAGGGCCTCCCAGTTGTGCTGTTTCCCAAAACAAAAAAAGAGCCTGATGGAATATCTCCAATTGACCTCGTTGCTGTCCTTAGGGGACTTGAGGTTGACTTTGTTCTTCTGGCTGGTTACCTACAACTTATACCGGTAGAGTTGATTCAAGCTTATCCCAGATCCATAGTGAACATCCATCCATCACTTCTTCCTGCATTTGGAGGCAAAGGTAACTATGGAATGAGGGTTCACAAAGCAGTCATTGCTTCTGGAGCAAGATACACAGGCCCTACAATACATTTTGTTGATGAGCATTATGACACTGGACGTATCCTGGCTCAAAGAGTTGTCCCAGTGCATGCTAATGACACTGCTGAGGAGCTGGCTGCGAGGGTCCTTAGGGAGGAGCATCGCTTATATGTGGAGGTCATAGCAGCATTATGTGAAGAGCGAATATTTTGGAGGGAAGATGGTGTTCCTATAATCCGCAGCAAAGAAAATCCCAATGAATACAGCTAA

Protein Analysis

301

Amino Acids

33.08

Weight (kDa)

8.64

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 88 - 273 2.3e-54 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31220
fragaria_vesca FvH4_5g23990
malus_domestica MD03G1153200.v1.1 MD10G1330400.v1.1
prunus_persica Prupe.4G012000_v2.0.a1
pyrus_communis pycom03g10680 pycom10g27980
rosa_chinensis RchiOBHm_Chr7g0213451
rosa_laevigata RLG00000002803
rosa_multiflora Rmu_sc0013012.1_g000010 Rmu_ssc0000262.1_g000002
rosa_roxburghii Rroxscaffold_3G00245870
rosa_rugosa Rorug07G0142400
rosa_samantha Rh7AG274400 Rh7BG269900 Rh7CG293600 Rh7DG281900
rosa_wichuraiana Rw7G023800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 259, 272, 874
AclWI GGATC 1 cut(s) 561
AfiI CCNNNNNNNGG 6 cut(s) 129, 130, 303, 327, 605, 790
AgeI ACCGGT 1 cut(s) 538
AgsI TTSAA 3 cut(s) 142, 336, 554
AjnI CCWGG 1 cut(s) 720
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AloI GAACNNNNNNTCC 2 cut(s) 618, 650
AluBI AGCT 4 cut(s) 268, 557, 769, 903
AluI AGCT 4 cut(s) 268, 557, 769, 903
Alw26I GTCTC 2 cut(s) 139, 339
AlwI GGATC 1 cut(s) 561
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 3 cut(s) 144, 409, 673
ApeKI GCWGC 4 cut(s) 195, 773, 821, 876
AsiGI ACCGGT 1 cut(s) 538
AspS9I GGNCC 4 cut(s) 306, 409, 674, 781
AvaII GGWCC 2 cut(s) 306, 781
AxyI CCTNAGG 2 cut(s) 485, 785
BbvCI CCTCAGC 1 cut(s) 762
BbvI GCAGC 4 cut(s) 207, 760, 833, 888
BccI CCATC 4 cut(s) 446, 591, 595, 851
BciT130I CCWGG 1 cut(s) 722
BciVI GTATCC 1 cut(s) 728
BcoDI GTCTC 2 cut(s) 139, 339
BfaI CTAG 1 cut(s) 177
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 4 cut(s) 196, 774, 822, 877
BlsI GCNGC 4 cut(s) 197, 775, 823, 878
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 2 cut(s) 306, 781
BmgT120I GGNCC 4 cut(s) 306, 409, 674, 781
BmiI GGNNCC 2 cut(s) 295, 782
BmrFI CCNGG 1 cut(s) 722
BmrI ACTGGG 2 cut(s) 410, 734
BmsI GCATC 2 cut(s) 22, 805
BmuI ACTGGG 2 cut(s) 410, 734
BpmI CTGGAG 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 515
BsaI GGTCTC 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 538
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 6 cut(s) 129, 130, 303, 327, 605, 790
Bse118I RCCGGY 1 cut(s) 538
Bse1I ACTGG 3 cut(s) 416, 715, 740
Bse21I CCTNAGG 2 cut(s) 485, 785
Bse3DI GCAATG 2 cut(s) 216, 648
BseBI CCWGG 1 cut(s) 722
BseGI GGATG 2 cut(s) 579, 583
BseLI CCNNNNNNNGG 6 cut(s) 129, 130, 303, 327, 605, 790
BseMI GCAATG 2 cut(s) 216, 648
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 3 cut(s) 416, 715, 740
BseRI GAGGAG 2 cut(s) 779, 806
BseXI GCAGC 4 cut(s) 207, 760, 833, 888
BshFI GGCC 3 cut(s) 146, 411, 675
BshTI ACCGGT 1 cut(s) 538
BsiSI CCGG 1 cut(s) 539
BslFI GGGAC 2 cut(s) 504, 722
BslI CCNNNNNNNGG 6 cut(s) 129, 130, 303, 327, 605, 790
BsmAI GTCTC 2 cut(s) 139, 339
BsmFI GGGAC 2 cut(s) 504, 722
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 3 cut(s) 146, 411, 675
Bso31I GGTCTC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 566
BspACI CCGC 3 cut(s) 259, 272, 874
BspANI GGCC 3 cut(s) 146, 411, 675
BspCNI CTCAG 1 cut(s) 754
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 295, 782
BspPI GGATC 1 cut(s) 561
BspQI GCTCTTC 1 cut(s) 828
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 216, 648
BsrFI RCCGGY 1 cut(s) 538
BsrI ACTGG 3 cut(s) 416, 715, 740
BssAI RCCGGY 1 cut(s) 538
BssMI GATC 1 cut(s) 566
Bst2UI CCWGG 1 cut(s) 722
Bst6I CTCTTC 2 cut(s) 91, 828
BstAPI GCANNNNNTGC 1 cut(s) 650
BstC8I GCNNGC 5 cut(s) 148, 270, 322, 747, 771
BstDEI CTNAG 3 cut(s) 485, 762, 785
BstEII GGTNACC 1 cut(s) 521
BstENI CCTNNNNNAGG 1 cut(s) 788
BstF5I GGATG 2 cut(s) 579, 583
BstKTI GATC 1 cut(s) 569
BstMAI GTCTC 2 cut(s) 139, 339
BstMBI GATC 1 cut(s) 566
BstMWI GCNNNNNNNGC 4 cut(s) 265, 395, 650, 659
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 1 cut(s) 749
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 720
BstV1I GCAGC 4 cut(s) 207, 760, 833, 888
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
Bsu36I CCTNAGG 2 cut(s) 485, 785
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 3 cut(s) 146, 411, 675
BtgZI GCGATG 1 cut(s) 782
BtsCI GGATG 2 cut(s) 579, 583
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 3 cut(s) 708, 747, 756
Cac8I GCNNGC 5 cut(s) 148, 270, 322, 747, 771
CaiI CAGNNNCTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 538
Cfr13I GGNCC 4 cut(s) 306, 409, 674, 781
CspAI ACCGGT 1 cut(s) 538
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 3 cut(s) 314, 341, 746
DdeI CTNAG 3 cut(s) 485, 762, 785
DpnI GATC 1 cut(s) 568
DpnII GATC 1 cut(s) 566
Eam1104I CTCTTC 2 cut(s) 91, 828
EarI CTCTTC 2 cut(s) 91, 828
EciI GGCGGA 1 cut(s) 274
Eco147I AGGCCT 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 306, 781
Eco81I CCTNAGG 2 cut(s) 485, 785
Eco91I GGTNACC 1 cut(s) 521
EcoNI CCTNNNNNAGG 1 cut(s) 788
EcoO109I RGGNCCY 3 cut(s) 409, 674, 781
EcoO65I GGTNACC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 720
FaeI CATG 3 cut(s) 317, 344, 749
FaqI GGGAC 2 cut(s) 504, 722
FatI CATG 3 cut(s) 313, 340, 745
Fnu4HI GCNGC 4 cut(s) 196, 774, 822, 877
FokI GGATG 2 cut(s) 566, 570
Fsp4HI GCNGC 4 cut(s) 196, 774, 822, 877
FspBI CTAG 1 cut(s) 177
GluI GCNGC 4 cut(s) 196, 774, 822, 877
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 3 cut(s) 146, 411, 675
HapII CCGG 1 cut(s) 539
Hin1II CATG 3 cut(s) 317, 344, 749
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 2 cut(s) 266, 555
HinfI GANTC 1 cut(s) 550
HpaII CCGG 1 cut(s) 539
Hpy166II GTNNAC 3 cut(s) 502, 577, 637
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 314, 657
Hpy8I GTNNAC 3 cut(s) 502, 577, 637
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 6 cut(s) 49, 74, 324, 398, 602, 745
HpyF10VI GCNNNNNNNGC 4 cut(s) 265, 395, 650, 659
HpyF3I CTNAG 3 cut(s) 485, 762, 785
HpySE526I ACGT 1 cut(s) 715
Hsp92II CATG 3 cut(s) 317, 344, 749
Kzo9I GATC 1 cut(s) 566
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 5 cut(s) 192, 299, 659, 766, 793
Lsp1109I GCAGC 4 cut(s) 207, 760, 833, 888
LweI GCATC 2 cut(s) 22, 805
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 3 cut(s) 361, 521, 617
MalI GATC 1 cut(s) 568
MboI GATC 1 cut(s) 566
MboII GAAGA 9 cut(s) 78, 81, 84, 216, 248, 503, 587, 845, 866
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 1 cut(s) 566
MluCI AATT 5 cut(s) 65, 157, 298, 336, 465
MslI CAYNNNNRTG 1 cut(s) 750
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 722
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 324
MvaI CCWGG 1 cut(s) 722
MwoI GCNNNNNNNGC 4 cut(s) 265, 395, 650, 659
NdeII GATC 1 cut(s) 566
NlaIII CATG 3 cut(s) 317, 344, 749
NlaIV GGNNCC 2 cut(s) 295, 782
NspI RCATGY 1 cut(s) 749
PaeI GCATGC 1 cut(s) 749
PagI TCATGA 1 cut(s) 313
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 828
PctI GAATGC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 550
PinAI ACCGGT 1 cut(s) 538
PkrI GCNGC 4 cut(s) 197, 775, 823, 878
PpuMI RGGWCCY 1 cut(s) 781
Psp5II RGGWCCY 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 720
PspEI GGTNACC 1 cut(s) 521
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 2 cut(s) 295, 782
PspPI GGNCC 4 cut(s) 306, 409, 674, 781
PspPPI RGGWCCY 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 566
RseI CAYNNNNRTG 1 cut(s) 750
SapI GCTCTTC 1 cut(s) 828
SatI GCNGC 4 cut(s) 196, 774, 822, 877
Sau3AI GATC 1 cut(s) 566
Sau96I GGNCC 4 cut(s) 306, 409, 674, 781
ScrFI CCNGG 1 cut(s) 722
SfaNI GCATC 2 cut(s) 22, 805
SinI GGWCC 2 cut(s) 306, 781
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SphI GCATGC 1 cut(s) 749
Sse9I AATT 5 cut(s) 65, 157, 298, 336, 465
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 3 cut(s) 259, 272, 874
SspI AATATT 1 cut(s) 843
SspMI CTAG 1 cut(s) 177
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 720
TaiI ACGT 1 cut(s) 718
TaqII GACCGA 1 cut(s) 294
TasI AATT 5 cut(s) 65, 157, 298, 336, 465
TfiI GAWTC 1 cut(s) 550
TscAI CASTG 3 cut(s) 715, 747, 763
TseI GCWGC 4 cut(s) 195, 773, 821, 876
TspDTI ATGAA 3 cut(s) 302, 329, 330
TspRI CASTG 3 cut(s) 715, 747, 763
VpaK11BI GGWCC 2 cut(s) 306, 781
XagI CCTNNNNNAGG 1 cut(s) 788
XceI RCATGY 1 cut(s) 749
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.