Rroxscaffold_3G00245870

Phosphoribosylglycinamide formyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013535
Physical Location & Seq
Forward (+)
38954395 .. 38958532
4138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245870.1

Sequence Viewer

Length: 951 bp
ATGGAAGTTCAGCATCTGCTTTCTGGGTTTTGCTCAACCCCAATGATTCAAAACCCCAAGACCCAATTCTTCGCAAGATTGCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTGCTTCTACATATTTTGCTCAATCCCACAAATGGGTCTCCTTCAAGGCCTGCCCTTGTAATTCACAGAGGGCATTGTCTAGGAAGGTGGTAGAGTGTAGGAGCAGCACAGAGAGAACTGGGGTCATTGCTTATTCTGATAGTGAAGATTTGGGGAATGGGATTAGGCGGAAAAAGCTTGCGGTTTTTGTGTCTGGTGGAGGCTCCAATTTTCGGTCCATTCATGAAGCCTGCATTCGGGGTTCAATTCATGGAGACATTGTTGTTTTAGTTACTAACAAACAAGGTTGTGGAGGTGCTGACTATGCAAGAGATAAGGGCCTCCCAGTTGTGCTGTTTCCCAAAACAAAAAAAGAGCCTGATGGAATATCTCCAATTGACCTCGTTGCTGTCCTTAGGGGACTTGAGGTTGACTTTGTTCTTCTGGCTGGTTACCTACAACTTATACCGGTAGAGTTGATACAAGCGTATCCCAGATCCATAGTGAACATCCATCCATCACTTCTTCCTGCATTTGGAGGAAAAGGTAACTATGGAATGAGGGTTCACAAAGCAGTCATTGCTTCTGGAGCAAGATACACAGGCCCTACAATACATTTTGTTGATGAGCATTATGACACTGGACGTATCCTTGCTCAAAGAGTTGTCCCAGTGCGTGCTAATGACACTGCTGAGGAGCTGGCTGCAAGGGTCCTTAGGGAGGAGCATCGCTTATATGTGGAGGTCATAACAGCATTATGTGAAGAGCGAATATTTTGGAGGGAAGATGGTGTTCCTATAATCCGCAGCAAAGAAAATCCCAATGAATACAGCTAA

Protein Analysis

316

Amino Acids

34.59

Weight (kDa)

8.92

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 103 - 288 3.6e-54 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31220
fragaria_vesca FvH4_5g23990
malus_domestica MD03G1153200.v1.1 MD10G1330400.v1.1
prunus_persica Prupe.4G012000_v2.0.a1
pyrus_communis pycom03g10680 pycom10g27980
rosa_chinensis RchiOBHm_Chr7g0213451
rosa_laevigata RLG00000002803
rosa_multiflora Rmu_sc0013012.1_g000010 Rmu_ssc0000262.1_g000002
rosa_roxburghii Rroxscaffold_3G00245870
rosa_rugosa Rorug07G0142400
rosa_samantha Rh7AG274400 Rh7BG269900 Rh7CG293600 Rh7DG281900
rosa_wichuraiana Rw7G023800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 304, 317, 919
AclWI GGATC 1 cut(s) 606
AfiI CCNNNNNNNGG 6 cut(s) 168, 169, 348, 372, 650, 835
AgeI ACCGGT 1 cut(s) 583
AgsI TTSAA 3 cut(s) 50, 181, 381
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AloI GAACNNNNNNTCC 2 cut(s) 663, 695
AluBI AGCT 3 cut(s) 313, 814, 948
AluI AGCT 3 cut(s) 313, 814, 948
Alw26I GTCTC 2 cut(s) 178, 384
AlwI GGATC 1 cut(s) 606
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 3 cut(s) 183, 454, 718
ApeKI GCWGC 3 cut(s) 240, 818, 921
AsiGI ACCGGT 1 cut(s) 583
AspS9I GGNCC 4 cut(s) 351, 454, 719, 826
AvaII GGWCC 2 cut(s) 351, 826
AxyI CCTNAGG 2 cut(s) 530, 830
BaeI ACNNNNGTAYC 4 cut(s) 587, 587, 620, 620
BbvCI CCTCAGC 1 cut(s) 807
BbvI GCAGC 3 cut(s) 252, 805, 933
BccI CCATC 4 cut(s) 491, 636, 640, 896
BciVI GTATCC 2 cut(s) 615, 773
BcoDI GTCTC 2 cut(s) 178, 384
BfaI CTAG 1 cut(s) 216
BfuI GTATCC 2 cut(s) 615, 773
BisI GCNGC 3 cut(s) 241, 819, 922
BlsI GCNGC 3 cut(s) 242, 820, 923
Bme18I GGWCC 2 cut(s) 351, 826
BmgT120I GGNCC 4 cut(s) 351, 454, 719, 826
BmiI GGNNCC 2 cut(s) 340, 827
BmrI ACTGGG 3 cut(s) 264, 455, 779
BmsI GCATC 2 cut(s) 22, 850
BmuI ACTGGG 3 cut(s) 264, 455, 779
BpmI CTGGAG 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 807
BpuEI CTTGAG 1 cut(s) 560
BsaI GGTCTC 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 583
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 6 cut(s) 168, 169, 348, 372, 650, 835
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 4 cut(s) 259, 461, 760, 785
Bse21I CCTNAGG 2 cut(s) 530, 830
Bse3DI GCAATG 2 cut(s) 261, 693
BseGI GGATG 2 cut(s) 624, 628
BseLI CCNNNNNNNGG 6 cut(s) 168, 169, 348, 372, 650, 835
BseMI GCAATG 2 cut(s) 261, 693
BseMII CTCAG 1 cut(s) 798
BseNI ACTGG 4 cut(s) 259, 461, 760, 785
BseRI GAGGAG 2 cut(s) 824, 851
BseXI GCAGC 3 cut(s) 252, 805, 933
BshFI GGCC 3 cut(s) 185, 456, 720
BshTI ACCGGT 1 cut(s) 583
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 2 cut(s) 549, 767
BslI CCNNNNNNNGG 6 cut(s) 168, 169, 348, 372, 650, 835
BsmAI GTCTC 2 cut(s) 178, 384
BsmFI GGGAC 2 cut(s) 549, 767
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 3 cut(s) 185, 456, 720
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 611
BspACI CCGC 3 cut(s) 304, 317, 919
BspANI GGCC 3 cut(s) 185, 456, 720
BspCNI CTCAG 1 cut(s) 799
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 340, 827
BspPI GGATC 1 cut(s) 606
BspQI GCTCTTC 1 cut(s) 873
BspTNI GGTCTC 1 cut(s) 178
BsrDI GCAATG 2 cut(s) 261, 693
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 4 cut(s) 259, 461, 760, 785
BssAI RCCGGY 1 cut(s) 583
BssMI GATC 1 cut(s) 611
Bst6I CTCTTC 2 cut(s) 91, 873
BstAPI GCANNNNNTGC 1 cut(s) 695
BstC8I GCNNGC 5 cut(s) 187, 315, 367, 792, 816
BstDEI CTNAG 3 cut(s) 530, 807, 830
BstEII GGTNACC 1 cut(s) 566
BstENI CCTNNNNNAGG 1 cut(s) 833
BstF5I GGATG 2 cut(s) 624, 628
BstKTI GATC 1 cut(s) 614
BstMAI GTCTC 2 cut(s) 178, 384
BstMBI GATC 1 cut(s) 611
BstMWI GCNNNNNNNGC 4 cut(s) 310, 440, 695, 704
BstPI GGTNACC 1 cut(s) 566
BstV1I GCAGC 3 cut(s) 252, 805, 933
BstX2I RGATCY 1 cut(s) 611
BstYI RGATCY 1 cut(s) 611
Bsu36I CCTNAGG 2 cut(s) 530, 830
BsuI GTATCC 2 cut(s) 615, 773
BsuRI GGCC 3 cut(s) 185, 456, 720
BtgZI GCGATG 1 cut(s) 827
BtsCI GGATG 2 cut(s) 624, 628
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 3 cut(s) 753, 792, 801
Cac8I GCNNGC 5 cut(s) 187, 315, 367, 792, 816
CaiI CAGNNNCTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 4 cut(s) 351, 454, 719, 826
CspAI ACCGGT 1 cut(s) 583
CviAII CATG 2 cut(s) 359, 386
DdeI CTNAG 3 cut(s) 530, 807, 830
DpnI GATC 1 cut(s) 613
DpnII GATC 1 cut(s) 611
Eam1104I CTCTTC 2 cut(s) 91, 873
EarI CTCTTC 2 cut(s) 91, 873
EciI GGCGGA 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 351, 826
Eco81I CCTNAGG 2 cut(s) 530, 830
Eco91I GGTNACC 1 cut(s) 566
EcoNI CCTNNNNNAGG 1 cut(s) 833
EcoO109I RGGNCCY 3 cut(s) 454, 719, 826
EcoO65I GGTNACC 1 cut(s) 566
FaeI CATG 2 cut(s) 362, 389
FaqI GGGAC 2 cut(s) 549, 767
FatI CATG 2 cut(s) 358, 385
Fnu4HI GCNGC 3 cut(s) 241, 819, 922
FokI GGATG 2 cut(s) 611, 615
Fsp4HI GCNGC 3 cut(s) 241, 819, 922
FspBI CTAG 1 cut(s) 216
GluI GCNGC 3 cut(s) 241, 819, 922
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 3 cut(s) 185, 456, 720
HapII CCGG 1 cut(s) 584
Hin1II CATG 2 cut(s) 362, 389
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 46
HpaII CCGG 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 547, 622, 682
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 2 cut(s) 359, 702
Hpy8I GTNNAC 3 cut(s) 547, 622, 682
HpyAV CCTTC 2 cut(s) 187, 214
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 4 cut(s) 369, 443, 647, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 310, 440, 695, 704
HpyF3I CTNAG 3 cut(s) 530, 807, 830
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 2 cut(s) 362, 389
Kzo9I GATC 1 cut(s) 611
LguI GCTCTTC 1 cut(s) 873
LmnI GCTCC 5 cut(s) 237, 344, 704, 811, 838
Lsp1109I GCAGC 3 cut(s) 252, 805, 933
LweI GCATC 2 cut(s) 22, 850
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 3 cut(s) 406, 566, 662
MalI GATC 1 cut(s) 613
MboI GATC 1 cut(s) 611
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 611
MluCI AATT 5 cut(s) 65, 196, 343, 381, 510
MspI CCGG 1 cut(s) 584
MunI CAATTG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 369
MwoI GCNNNNNNNGC 4 cut(s) 310, 440, 695, 704
NdeII GATC 1 cut(s) 611
NlaIII CATG 2 cut(s) 362, 389
NlaIV GGNNCC 2 cut(s) 340, 827
PagI TCATGA 1 cut(s) 358
PceI AGGCCT 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 873
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 46
PinAI ACCGGT 1 cut(s) 583
PkrI GCNGC 3 cut(s) 242, 820, 923
PpuMI RGGWCCY 1 cut(s) 826
Psp5II RGGWCCY 1 cut(s) 826
PspEI GGTNACC 1 cut(s) 566
PspN4I GGNNCC 2 cut(s) 340, 827
PspPI GGNCC 4 cut(s) 351, 454, 719, 826
PspPPI RGGWCCY 1 cut(s) 826
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 611
SapI GCTCTTC 1 cut(s) 873
SatI GCNGC 3 cut(s) 241, 819, 922
Sau3AI GATC 1 cut(s) 611
Sau96I GGNCC 4 cut(s) 351, 454, 719, 826
SfaNI GCATC 2 cut(s) 22, 850
SinI GGWCC 2 cut(s) 351, 826
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 5 cut(s) 65, 196, 343, 381, 510
SseBI AGGCCT 1 cut(s) 185
SsiI CCGC 3 cut(s) 304, 317, 919
SspI AATATT 1 cut(s) 888
SspMI CTAG 1 cut(s) 216
StuI AGGCCT 1 cut(s) 185
TaiI ACGT 1 cut(s) 763
TaqII GACCGA 1 cut(s) 339
TasI AATT 5 cut(s) 65, 196, 343, 381, 510
TfiI GAWTC 1 cut(s) 46
TscAI CASTG 3 cut(s) 760, 792, 808
TseI GCWGC 3 cut(s) 240, 818, 921
TspDTI ATGAA 3 cut(s) 347, 374, 375
TspRI CASTG 3 cut(s) 760, 792, 808
VpaK11BI GGWCC 2 cut(s) 351, 826
XagI CCTNNNNNAGG 1 cut(s) 833
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.