Rh7BG269900

Phosphoribosylglycinamide formyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013535
Physical Location & Seq
Reverse (-)
24759725 .. 24764346
4622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG269900.1

Sequence Viewer

Length: 903 bp
ATGGAAGTTCAGCATCTGCTTTCTGGGTCTTGCTCAACCCCAATGATGCAAAACCCCAAGACCCAATTCTTTGCAAGATTGCCCTCTTCTTCTTCTACAGCTTCTACATATTTTGCTCAATCCCACAAATGGGTCTCCTTCAAGGCCTGCCCTTGTAATTCACAGAGGGCATTGTCTAGGATAGAGTGTACGAGCACAGAGAGAGCTGGGGTCATTGCTTCTTCTGATAGTGAAGATTTGGGGAATGGGATTAGGCGGAAAAAGCTTGCGGTTTTTGTGTCTGGTGGAGGCTCCAATTTTCGGTCCATTCATGAAGCCTGCATTCGGGGTTCAATTCATGGAGACATTGTTGTTTTAGTTACTAACAAACAAGGTTGTGGAGGTGCTGACTATGCAAGAGATAAGGGCCTCCCAGTTGTGCTGTTTCCCAAAACAAAAAAAGAGCCTGATGGAATATCTCCAATTGACCTCGTTGCTGTCCTTAGGGGACTTGAGGTTGACTTTGTTCTTCTGGCTGGTTACCTACAACTTATACCGGTAGAGTTGATACAAGCTTATCCCAGATCCATAGTGAACATCCATCCATCACTTCTTCCTGCATTTGGAGGCAAAGGTAACTATGGAATGAGGGTTCACAAAGCAGTCATTGCTTCTGGAGCAAGATACACAGGCCCTACAATACATTTTGTTGATGAGCATTATGACACTGGACGTATCCTTGCTCAAAGAGTTGTCCCAGTGCGTGCTAATGACACTGCTGAGGAGCTGGCTGCAAGGGTCCTTAGGGAGGAGCATCGCTTATATGTGGAGGTCATAACAGCATTATGTGAAGAGCGAATATTTTGGAGGGAAGATGGTGTTCCTATAATCCGCAGCAAAGAAAATCCCAATGAATACAGCTAA

Protein Analysis

300

Amino Acids

32.95

Weight (kDa)

8.64

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 87 - 272 3.1e-54 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31220
fragaria_vesca FvH4_5g23990
malus_domestica MD03G1153200.v1.1 MD10G1330400.v1.1
prunus_persica Prupe.4G012000_v2.0.a1
pyrus_communis pycom03g10680 pycom10g27980
rosa_chinensis RchiOBHm_Chr7g0213451
rosa_laevigata RLG00000002803
rosa_multiflora Rmu_sc0013012.1_g000010 Rmu_ssc0000262.1_g000002
rosa_roxburghii Rroxscaffold_3G00245870
rosa_rugosa Rorug07G0142400
rosa_samantha Rh7AG274400 Rh7BG269900 Rh7CG293600 Rh7DG281900
rosa_wichuraiana Rw7G023800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 256, 269, 871
AclWI GGATC 1 cut(s) 558
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 6 cut(s) 129, 130, 300, 324, 602, 787
AgeI ACCGGT 1 cut(s) 535
AgsI TTSAA 2 cut(s) 142, 333
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
AluBI AGCT 6 cut(s) 101, 206, 265, 554, 766, 900
AluI AGCT 6 cut(s) 101, 206, 265, 554, 766, 900
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 2 cut(s) 139, 336
AlwI GGATC 1 cut(s) 558
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 3 cut(s) 144, 406, 670
ApeKI GCWGC 2 cut(s) 770, 873
AsiGI ACCGGT 1 cut(s) 535
AspS9I GGNCC 4 cut(s) 303, 406, 671, 778
AvaII GGWCC 2 cut(s) 303, 778
AxyI CCTNAGG 2 cut(s) 482, 782
Bbv12I GWGCWC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 759
BbvI GCAGC 2 cut(s) 757, 885
BccI CCATC 4 cut(s) 443, 588, 592, 848
BciVI GTATCC 1 cut(s) 725
BcoDI GTCTC 2 cut(s) 139, 336
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 96
BfuI GTATCC 1 cut(s) 725
BisI GCNGC 2 cut(s) 771, 874
BlsI GCNGC 2 cut(s) 772, 875
Bme18I GGWCC 2 cut(s) 303, 778
BmgT120I GGNCC 4 cut(s) 303, 406, 671, 778
BmiI GGNNCC 2 cut(s) 292, 779
BmrI ACTGGG 2 cut(s) 407, 731
BmsI GCATC 3 cut(s) 22, 36, 802
BmuI ACTGGG 2 cut(s) 407, 731
BpmI CTGGAG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 6 cut(s) 129, 130, 300, 324, 602, 787
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 3 cut(s) 413, 712, 737
Bse21I CCTNAGG 2 cut(s) 482, 782
Bse3DI GCAATG 2 cut(s) 213, 645
BseGI GGATG 2 cut(s) 576, 580
BseLI CCNNNNNNNGG 6 cut(s) 129, 130, 300, 324, 602, 787
BseMI GCAATG 2 cut(s) 213, 645
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 3 cut(s) 413, 712, 737
BseRI GAGGAG 2 cut(s) 776, 803
BseXI GCAGC 2 cut(s) 757, 885
BseYI CCCAGC 1 cut(s) 206
BshFI GGCC 3 cut(s) 146, 408, 672
BshTI ACCGGT 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 2 cut(s) 501, 719
BslI CCNNNNNNNGG 6 cut(s) 129, 130, 300, 324, 602, 787
BsmAI GTCTC 2 cut(s) 139, 336
BsmFI GGGAC 2 cut(s) 501, 719
BsmI GAATGC 1 cut(s) 321
BsnI GGCC 3 cut(s) 146, 408, 672
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 563
BspACI CCGC 3 cut(s) 256, 269, 871
BspANI GGCC 3 cut(s) 146, 408, 672
BspCNI CTCAG 1 cut(s) 751
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 292, 779
BspPI GGATC 1 cut(s) 558
BspQI GCTCTTC 1 cut(s) 825
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 213, 645
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 3 cut(s) 413, 712, 737
BssAI RCCGGY 1 cut(s) 535
BssMI GATC 1 cut(s) 563
Bst6I CTCTTC 2 cut(s) 91, 825
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 5 cut(s) 148, 267, 319, 744, 768
BstDEI CTNAG 3 cut(s) 482, 759, 782
BstEII GGTNACC 1 cut(s) 518
BstENI CCTNNNNNAGG 1 cut(s) 785
BstF5I GGATG 2 cut(s) 576, 580
BstKTI GATC 1 cut(s) 566
BstMAI GTCTC 2 cut(s) 139, 336
BstMBI GATC 1 cut(s) 563
BstMWI GCNNNNNNNGC 4 cut(s) 262, 392, 647, 656
BstPI GGTNACC 1 cut(s) 518
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 757, 885
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
Bsu36I CCTNAGG 2 cut(s) 482, 782
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 3 cut(s) 146, 408, 672
BtgZI GCGATG 1 cut(s) 779
BtsCI GGATG 2 cut(s) 576, 580
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 3 cut(s) 705, 744, 753
Cac8I GCNNGC 5 cut(s) 148, 267, 319, 744, 768
CaiI CAGNNNCTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 4 cut(s) 303, 406, 671, 778
Csp6I GTAC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 535
CviAII CATG 2 cut(s) 311, 338
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 3 cut(s) 482, 759, 782
DpnI GATC 1 cut(s) 565
DpnII GATC 1 cut(s) 563
Eam1104I CTCTTC 2 cut(s) 91, 825
EarI CTCTTC 2 cut(s) 91, 825
EciI GGCGGA 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 303, 778
Eco81I CCTNAGG 2 cut(s) 482, 782
Eco91I GGTNACC 1 cut(s) 518
EcoNI CCTNNNNNAGG 1 cut(s) 785
EcoO109I RGGNCCY 3 cut(s) 406, 671, 778
EcoO65I GGTNACC 1 cut(s) 518
FaeI CATG 2 cut(s) 314, 341
FaqI GGGAC 2 cut(s) 501, 719
FatI CATG 2 cut(s) 310, 337
Fnu4HI GCNGC 2 cut(s) 771, 874
FokI GGATG 2 cut(s) 563, 567
Fsp4HI GCNGC 2 cut(s) 771, 874
FspBI CTAG 1 cut(s) 177
GluI GCNGC 2 cut(s) 771, 874
GsaI CCCAGC 1 cut(s) 210
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 3 cut(s) 146, 408, 672
HapII CCGG 1 cut(s) 536
Hin1II CATG 2 cut(s) 314, 341
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 2 cut(s) 263, 552
HpaII CCGG 1 cut(s) 536
Hpy166II GTNNAC 4 cut(s) 189, 499, 574, 634
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 311, 654
Hpy8I GTNNAC 4 cut(s) 189, 499, 574, 634
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 6 cut(s) 49, 74, 321, 395, 599, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 392, 647, 656
HpyF3I CTNAG 3 cut(s) 482, 759, 782
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 2 cut(s) 314, 341
Kzo9I GATC 1 cut(s) 563
LguI GCTCTTC 1 cut(s) 825
LmnI GCTCC 4 cut(s) 296, 656, 763, 790
Lsp1109I GCAGC 2 cut(s) 757, 885
LweI GCATC 3 cut(s) 22, 36, 802
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 3 cut(s) 358, 518, 614
MalI GATC 1 cut(s) 565
MboI GATC 1 cut(s) 563
MboII GAAGA 9 cut(s) 78, 81, 84, 213, 245, 500, 584, 842, 863
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 5 cut(s) 65, 157, 295, 333, 462
MspI CCGG 1 cut(s) 536
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 321
MwoI GCNNNNNNNGC 4 cut(s) 262, 392, 647, 656
NdeII GATC 1 cut(s) 563
NlaIII CATG 2 cut(s) 314, 341
NlaIV GGNNCC 2 cut(s) 292, 779
PagI TCATGA 1 cut(s) 310
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 825
PctI GAATGC 1 cut(s) 321
PinAI ACCGGT 1 cut(s) 535
PkrI GCNGC 2 cut(s) 772, 875
PpuMI RGGWCCY 1 cut(s) 778
Psp5II RGGWCCY 1 cut(s) 778
PspEI GGTNACC 1 cut(s) 518
PspFI CCCAGC 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 292, 779
PspPI GGNCC 4 cut(s) 303, 406, 671, 778
PspPPI RGGWCCY 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 563
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 825
SatI GCNGC 2 cut(s) 771, 874
Sau3AI GATC 1 cut(s) 563
Sau96I GGNCC 4 cut(s) 303, 406, 671, 778
SduI GDGCHC 1 cut(s) 197
SfaNI GCATC 3 cut(s) 22, 36, 802
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 2 cut(s) 303, 778
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 5 cut(s) 65, 157, 295, 333, 462
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 3 cut(s) 256, 269, 871
SspI AATATT 1 cut(s) 840
SspMI CTAG 1 cut(s) 177
StuI AGGCCT 1 cut(s) 146
TaiI ACGT 1 cut(s) 715
TaqII GACCGA 1 cut(s) 291
TasI AATT 5 cut(s) 65, 157, 295, 333, 462
TscAI CASTG 3 cut(s) 712, 744, 760
TseI GCWGC 2 cut(s) 770, 873
TspDTI ATGAA 3 cut(s) 299, 326, 327
TspRI CASTG 3 cut(s) 712, 744, 760
VpaK11BI GGWCC 2 cut(s) 303, 778
XagI CCTNNNNNAGG 1 cut(s) 785
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.