RLG00000002803

Phosphoribosylglycinamide formyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013535
Physical Location & Seq
Forward (+)
40073325 .. 40076915
3591 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002803

Sequence Viewer

Length: 888 bp
ATGATTCAAAACCCCAAGACCCAATTCTTGGCAAGATTGCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACATATATTGCTCAATCCCACAAATGGGTCTCCTTCAAGGCCTGCCCTTGTAATTCACAGAGGGCATTGTCTAGGAAGGTGGTAGAGTGTAGGAGCAGCACAGAGAGAACTGGGGTCATTGCTTCTTCTGATAGTGAAGATTTGGGGAATGGGATTAGGCGGAAAAAGCTTGCGGTTTTTGTGTCTGGTGGAGGCTCCAATTTTCGGTCCATTCATGAAGCCTGCATTCGGGGTTCAATTCATGGAGACATTGTTGTTTTAGTTACTAATAAACAAGGTTGTGGAGGTGCTGACTATGCAAGAGATAAGGGCCTCCCAGTTGTGCTGTTTCCCAAAACAAAAAAAGAGCCTGATGGAATATCTCCAATTGACCTCGTTGCTGTCCTTAGGGGACTTGAGGTTGACTTTGTTGTTCTGGCTGGTTACCTACAACTTTTACCGGTAGAGTTGATACAAGCTTATCCCAGATCCATAGTGAACATCCATCCATCACTTCTTCCTGCATTTGGAGGCAAAGGTTACTATGGAATGAGGGTTCACAAAGCAGTCATTGCTTCTGGAGCAAGATACACAGGCCCTACGATACATTTTGTTGATGAGCATTATGACACTGGACGCATCCTTGCTCAACGAGTTGTCCCAGTGCGTGCTAATGACACTGCGGAGGAGCTGGCTGCAAGGGTCCTTAGGGAGGAGCATCGCTTATATGTGGAGGTCATAACAGCATTATGTGAAGAGCGAATATTTTGGAGGGAAGATGGTGTTCCTATAATCCGCAGCAAAGAAAATCCCAATGAATACAGCTAA

Protein Analysis

296

Amino Acids

32.34

Weight (kDa)

9.1

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 82 - 267 6.2e-55 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31220
fragaria_vesca FvH4_5g23990
malus_domestica MD03G1153200.v1.1 MD10G1330400.v1.1
prunus_persica Prupe.4G012000_v2.0.a1
pyrus_communis pycom03g10680 pycom10g27980
rosa_chinensis RchiOBHm_Chr7g0213451
rosa_laevigata RLG00000002803
rosa_multiflora Rmu_sc0013012.1_g000010 Rmu_ssc0000262.1_g000002
rosa_roxburghii Rroxscaffold_3G00245870
rosa_rugosa Rorug07G0142400
rosa_samantha Rh7AG274400 Rh7BG269900 Rh7CG293600 Rh7DG281900
rosa_wichuraiana Rw7G023800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 4 cut(s) 241, 254, 743, 856
AclWI GGATC 1 cut(s) 543
AfiI CCNNNNNNNGG 7 cut(s) 28, 105, 106, 285, 309, 587, 772
AgeI ACCGGT 1 cut(s) 520
AgsI TTSAA 3 cut(s) 8, 118, 318
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AloI GAACNNNNNNTCC 2 cut(s) 600, 632
AluBI AGCT 4 cut(s) 250, 539, 751, 885
AluI AGCT 4 cut(s) 250, 539, 751, 885
Alw26I GTCTC 2 cut(s) 115, 321
AlwI GGATC 1 cut(s) 543
AoxI GGCC 3 cut(s) 120, 391, 655
ApeKI GCWGC 3 cut(s) 177, 755, 858
AsiGI ACCGGT 1 cut(s) 520
AspS9I GGNCC 4 cut(s) 288, 391, 656, 763
AvaII GGWCC 2 cut(s) 288, 763
AxyI CCTNAGG 2 cut(s) 467, 767
BbvI GCAGC 3 cut(s) 189, 742, 870
BccI CCATC 4 cut(s) 428, 573, 577, 833
BcoDI GTCTC 2 cut(s) 115, 321
BfaI CTAG 1 cut(s) 153
BisI GCNGC 3 cut(s) 178, 756, 859
BlsI GCNGC 3 cut(s) 179, 757, 860
Bme18I GGWCC 2 cut(s) 288, 763
BmgT120I GGNCC 4 cut(s) 288, 391, 656, 763
BmiI GGNNCC 2 cut(s) 277, 764
BmrI ACTGGG 3 cut(s) 201, 392, 716
BmsI GCATC 2 cut(s) 708, 787
BmuI ACTGGG 3 cut(s) 201, 392, 716
BpmI CTGGAG 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 520
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 7 cut(s) 28, 105, 106, 285, 309, 587, 772
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 4 cut(s) 196, 398, 697, 722
Bse21I CCTNAGG 2 cut(s) 467, 767
Bse3DI GCAATG 2 cut(s) 198, 630
BseGI GGATG 3 cut(s) 561, 565, 699
BseLI CCNNNNNNNGG 7 cut(s) 28, 105, 106, 285, 309, 587, 772
BseMI GCAATG 2 cut(s) 198, 630
BseNI ACTGG 4 cut(s) 196, 398, 697, 722
BseRI GAGGAG 2 cut(s) 761, 788
BseXI GCAGC 3 cut(s) 189, 742, 870
BshFI GGCC 3 cut(s) 122, 393, 657
BshTI ACCGGT 1 cut(s) 520
BsiSI CCGG 1 cut(s) 521
BslFI GGGAC 2 cut(s) 486, 704
BslI CCNNNNNNNGG 7 cut(s) 28, 105, 106, 285, 309, 587, 772
BsmAI GTCTC 2 cut(s) 115, 321
BsmFI GGGAC 2 cut(s) 486, 704
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 3 cut(s) 122, 393, 657
Bso31I GGTCTC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 548
BspACI CCGC 4 cut(s) 241, 254, 743, 856
BspANI GGCC 3 cut(s) 122, 393, 657
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 277, 764
BspPI GGATC 1 cut(s) 543
BspQI GCTCTTC 1 cut(s) 810
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 2 cut(s) 198, 630
BsrFI RCCGGY 1 cut(s) 520
BsrI ACTGG 4 cut(s) 196, 398, 697, 722
BssAI RCCGGY 1 cut(s) 520
BssMI GATC 1 cut(s) 548
Bst6I CTCTTC 2 cut(s) 49, 810
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 5 cut(s) 124, 252, 304, 729, 753
BstDEI CTNAG 2 cut(s) 467, 767
BstEII GGTNACC 1 cut(s) 503
BstENI CCTNNNNNAGG 1 cut(s) 770
BstF5I GGATG 3 cut(s) 561, 565, 699
BstKTI GATC 1 cut(s) 551
BstMAI GTCTC 2 cut(s) 115, 321
BstMBI GATC 1 cut(s) 548
BstMWI GCNNNNNNNGC 4 cut(s) 247, 377, 632, 641
BstPI GGTNACC 1 cut(s) 503
BstV1I GCAGC 3 cut(s) 189, 742, 870
BstX2I RGATCY 1 cut(s) 548
BstYI RGATCY 1 cut(s) 548
Bsu36I CCTNAGG 2 cut(s) 467, 767
BsuRI GGCC 3 cut(s) 122, 393, 657
BtgZI GCGATG 1 cut(s) 764
BtsCI GGATG 3 cut(s) 561, 565, 699
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 690, 729, 738
Cac8I GCNNGC 5 cut(s) 124, 252, 304, 729, 753
CciI TCATGA 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 4 cut(s) 288, 391, 656, 763
CseI GACGC 1 cut(s) 705
CspAI ACCGGT 1 cut(s) 520
CviAII CATG 2 cut(s) 296, 323
DdeI CTNAG 2 cut(s) 467, 767
DpnI GATC 1 cut(s) 550
DpnII GATC 1 cut(s) 548
Eam1104I CTCTTC 2 cut(s) 49, 810
EarI CTCTTC 2 cut(s) 49, 810
EciI GGCGGA 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 288, 763
Eco81I CCTNAGG 2 cut(s) 467, 767
Eco91I GGTNACC 1 cut(s) 503
EcoNI CCTNNNNNAGG 1 cut(s) 770
EcoO109I RGGNCCY 3 cut(s) 391, 656, 763
EcoO65I GGTNACC 1 cut(s) 503
FaeI CATG 2 cut(s) 299, 326
FaqI GGGAC 2 cut(s) 486, 704
FatI CATG 2 cut(s) 295, 322
Fnu4HI GCNGC 3 cut(s) 178, 756, 859
FokI GGATG 3 cut(s) 548, 552, 686
Fsp4HI GCNGC 3 cut(s) 178, 756, 859
FspBI CTAG 1 cut(s) 153
GluI GCNGC 3 cut(s) 178, 756, 859
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 3 cut(s) 122, 393, 657
HapII CCGG 1 cut(s) 521
HgaI GACGC 1 cut(s) 705
Hin1II CATG 2 cut(s) 299, 326
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 2 cut(s) 248, 537
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 521
Hpy166II GTNNAC 3 cut(s) 484, 559, 619
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 296, 639
Hpy8I GTNNAC 3 cut(s) 484, 559, 619
HpyAV CCTTC 2 cut(s) 124, 151
HpyCH4V TGCA 4 cut(s) 306, 380, 584, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 377, 632, 641
HpyF3I CTNAG 2 cut(s) 467, 767
Hsp92II CATG 2 cut(s) 299, 326
Kzo9I GATC 1 cut(s) 548
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 5 cut(s) 174, 281, 641, 748, 775
Lsp1109I GCAGC 3 cut(s) 189, 742, 870
LweI GCATC 2 cut(s) 708, 787
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 3 cut(s) 343, 503, 599
MalI GATC 1 cut(s) 550
MboI GATC 1 cut(s) 548
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 548
MluCI AATT 5 cut(s) 23, 133, 280, 318, 447
MspI CCGG 1 cut(s) 521
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 306
MwoI GCNNNNNNNGC 4 cut(s) 247, 377, 632, 641
NdeII GATC 1 cut(s) 548
NlaIII CATG 2 cut(s) 299, 326
NlaIV GGNNCC 2 cut(s) 277, 764
PagI TCATGA 1 cut(s) 295
PceI AGGCCT 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 810
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 28
PinAI ACCGGT 1 cut(s) 520
PkrI GCNGC 3 cut(s) 179, 757, 860
PpuMI RGGWCCY 1 cut(s) 763
Psp5II RGGWCCY 1 cut(s) 763
PspEI GGTNACC 1 cut(s) 503
PspN4I GGNNCC 2 cut(s) 277, 764
PspPI GGNCC 4 cut(s) 288, 391, 656, 763
PspPPI RGGWCCY 1 cut(s) 763
PsuI RGATCY 1 cut(s) 548
SapI GCTCTTC 1 cut(s) 810
SatI GCNGC 3 cut(s) 178, 756, 859
Sau3AI GATC 1 cut(s) 548
Sau96I GGNCC 4 cut(s) 288, 391, 656, 763
SfaNI GCATC 2 cut(s) 708, 787
SinI GGWCC 2 cut(s) 288, 763
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 5 cut(s) 23, 133, 280, 318, 447
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 4 cut(s) 241, 254, 743, 856
SspI AATATT 1 cut(s) 825
SspMI CTAG 1 cut(s) 153
StuI AGGCCT 1 cut(s) 122
TaqII GACCGA 1 cut(s) 276
TasI AATT 5 cut(s) 23, 133, 280, 318, 447
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 3 cut(s) 697, 729, 745
TseI GCWGC 3 cut(s) 177, 755, 858
TspDTI ATGAA 3 cut(s) 284, 311, 312
TspRI CASTG 3 cut(s) 697, 729, 745
Van91I CCANNNNNTGG 1 cut(s) 28
VpaK11BI GGWCC 2 cut(s) 288, 763
XagI CCTNNNNNAGG 1 cut(s) 770
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.