Rh7DG281900

Phosphoribosylglycinamide formyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013535
Physical Location & Seq
Reverse (-)
30463282 .. 30466858
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG281900.1

Sequence Viewer

Length: 915 bp
ATGGAAGTTCAGCATCTGCTTTCTGGGTTTTGCTCAACCCCAACCCCAATGGTGCAAAACCCCAAGACCCAAATCTTTGCAAGATTGCCCTCTTCTTCTTCTTCTACTGCTTCTACATATTTTGCTCAATCCCACAAATGGGTCTCCTTCAAGGCCTGCCCTTGTAATTCACAGAGGGCATTGTCTAGGATAGAGTGTAGGAGCAGCACAAAGAGAACTGGGGTCATTGCTTCTTCTGATAGTGAAGATTTGGGGAATGGGATTAGGCGGAAAAAGCTTGCGGTTTTTGTGTCTGGTGGAGGCTCCAATTTTCGGTCCATTCATGAAGCCTGCATTCAGGGTTCAATTCATGGAGACATTGTTGTTTTAGTTACTAACAAACAAGGTTGTGGAGGTGCTGATTATGCAAGAGATAAGGGCCTCCCAGTTGTGCTGTTTCCCAAAACAAAAAAAGAGCCTGATGGAATATCTCCAATTGACCTCGTTGCTGTCCTTAGGGGACTTGAGGTTGACTTTGTTCTTCTGGCTGGCTACCTACAACTTATACCGGTAGAGTTGATTCAAGCGTATCCCAGATCCATAGTGAACATCCATCCATCACTTCTTCCTGCATTTGGAGGCAAAGGTAACTATGGAATGAGGGTTCACAAAGCAGTCATTGCCTCTGGAGCAAGATACACAGGCCCTACAATACATTTTGTTGATGAGCATTATGACACTGGACGTATCCTGGCTCAAAGAGTTGTCCCAGTGCGTGCTAATGACACTGCTGAGGAGCTGGCTGCGAGGGTCCTTAGGGAGGAGCATCGCTTATATGTGGAGGTCATAACAGCATTATGTGAAGAGCGAATATTTTGGAGGGAAGATGGTGTTCCTATAATCCGCAGCAAAGAAAATCCCAATGAATACAGCTAA

Protein Analysis

304

Amino Acids

33.38

Weight (kDa)

8.93

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 91 - 276 1.1e-54 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31220
fragaria_vesca FvH4_5g23990
malus_domestica MD03G1153200.v1.1 MD10G1330400.v1.1
prunus_persica Prupe.4G012000_v2.0.a1
pyrus_communis pycom03g10680 pycom10g27980
rosa_chinensis RchiOBHm_Chr7g0213451
rosa_laevigata RLG00000002803
rosa_multiflora Rmu_sc0013012.1_g000010 Rmu_ssc0000262.1_g000002
rosa_roxburghii Rroxscaffold_3G00245870
rosa_rugosa Rorug07G0142400
rosa_samantha Rh7AG274400 Rh7BG269900 Rh7CG293600 Rh7DG281900
rosa_wichuraiana Rw7G023800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 268, 281, 883
AclWI GGATC 1 cut(s) 570
AfiI CCNNNNNNNGG 5 cut(s) 138, 139, 312, 614, 799
AgeI ACCGGT 1 cut(s) 547
AgsI TTSAA 3 cut(s) 151, 345, 563
AjnI CCWGG 1 cut(s) 729
AloI GAACNNNNNNTCC 2 cut(s) 627, 659
AluBI AGCT 3 cut(s) 277, 778, 912
AluI AGCT 3 cut(s) 277, 778, 912
Alw26I GTCTC 2 cut(s) 148, 348
AlwI GGATC 1 cut(s) 570
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 3 cut(s) 153, 418, 682
ApeKI GCWGC 3 cut(s) 204, 782, 885
AsiGI ACCGGT 1 cut(s) 547
AspS9I GGNCC 4 cut(s) 315, 418, 683, 790
AvaII GGWCC 2 cut(s) 315, 790
AxyI CCTNAGG 2 cut(s) 494, 794
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 3 cut(s) 216, 769, 897
BccI CCATC 4 cut(s) 455, 600, 604, 860
BciT130I CCWGG 1 cut(s) 731
BciVI GTATCC 2 cut(s) 579, 737
BcoDI GTCTC 2 cut(s) 148, 348
BfaI CTAG 1 cut(s) 186
BfuI GTATCC 2 cut(s) 579, 737
BisI GCNGC 3 cut(s) 205, 783, 886
BlsI GCNGC 3 cut(s) 206, 784, 887
Bme1390I CCNGG 1 cut(s) 731
Bme18I GGWCC 2 cut(s) 315, 790
BmgT120I GGNCC 4 cut(s) 315, 418, 683, 790
BmiI GGNNCC 2 cut(s) 304, 791
BmrFI CCNGG 1 cut(s) 731
BmrI ACTGGG 3 cut(s) 228, 419, 743
BmsI GCATC 2 cut(s) 22, 814
BmuI ACTGGG 3 cut(s) 228, 419, 743
BpmI CTGGAG 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 139, 312, 614, 799
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 4 cut(s) 223, 425, 724, 749
Bse21I CCTNAGG 2 cut(s) 494, 794
Bse3DI GCAATG 2 cut(s) 225, 657
BseBI CCWGG 1 cut(s) 731
BseGI GGATG 2 cut(s) 588, 592
BseLI CCNNNNNNNGG 5 cut(s) 138, 139, 312, 614, 799
BseMI GCAATG 2 cut(s) 225, 657
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 4 cut(s) 223, 425, 724, 749
BseRI GAGGAG 2 cut(s) 788, 815
BseXI GCAGC 3 cut(s) 216, 769, 897
BshFI GGCC 3 cut(s) 155, 420, 684
BshTI ACCGGT 1 cut(s) 547
BsiSI CCGG 1 cut(s) 548
BslFI GGGAC 2 cut(s) 513, 731
BslI CCNNNNNNNGG 5 cut(s) 138, 139, 312, 614, 799
BsmAI GTCTC 2 cut(s) 148, 348
BsmFI GGGAC 2 cut(s) 513, 731
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 3 cut(s) 155, 420, 684
Bso31I GGTCTC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 575
BspACI CCGC 3 cut(s) 268, 281, 883
BspANI GGCC 3 cut(s) 155, 420, 684
BspCNI CTCAG 1 cut(s) 763
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 304, 791
BspPI GGATC 1 cut(s) 570
BspQI GCTCTTC 1 cut(s) 837
BspTNI GGTCTC 1 cut(s) 148
BsrDI GCAATG 2 cut(s) 225, 657
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 4 cut(s) 223, 425, 724, 749
BssAI RCCGGY 1 cut(s) 547
BssMI GATC 1 cut(s) 575
Bst2UI CCWGG 1 cut(s) 731
Bst6I CTCTTC 2 cut(s) 97, 837
BstAPI GCANNNNNTGC 1 cut(s) 659
BstC8I GCNNGC 6 cut(s) 157, 279, 331, 529, 756, 780
BstDEI CTNAG 3 cut(s) 494, 771, 794
BstENI CCTNNNNNAGG 1 cut(s) 797
BstF5I GGATG 2 cut(s) 588, 592
BstKTI GATC 1 cut(s) 578
BstMAI GTCTC 2 cut(s) 148, 348
BstMBI GATC 1 cut(s) 575
BstMWI GCNNNNNNNGC 4 cut(s) 274, 404, 659, 668
BstNI CCWGG 1 cut(s) 731
BstSCI CCNGG 1 cut(s) 729
BstV1I GCAGC 3 cut(s) 216, 769, 897
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
Bsu36I CCTNAGG 2 cut(s) 494, 794
BsuI GTATCC 2 cut(s) 579, 737
BsuRI GGCC 3 cut(s) 155, 420, 684
BtgZI GCGATG 1 cut(s) 791
BtsCI GGATG 2 cut(s) 588, 592
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 3 cut(s) 717, 756, 765
Cac8I GCNNGC 6 cut(s) 157, 279, 331, 529, 756, 780
CaiI CAGNNNCTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 4 cut(s) 315, 418, 683, 790
CspAI ACCGGT 1 cut(s) 547
CviAII CATG 2 cut(s) 323, 350
DdeI CTNAG 3 cut(s) 494, 771, 794
DpnI GATC 1 cut(s) 577
DpnII GATC 1 cut(s) 575
Eam1104I CTCTTC 2 cut(s) 97, 837
EarI CTCTTC 2 cut(s) 97, 837
EciI GGCGGA 1 cut(s) 283
Eco147I AGGCCT 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 315, 790
Eco81I CCTNAGG 2 cut(s) 494, 794
EcoNI CCTNNNNNAGG 1 cut(s) 797
EcoO109I RGGNCCY 3 cut(s) 418, 683, 790
EcoRII CCWGG 1 cut(s) 729
FaeI CATG 2 cut(s) 326, 353
FaqI GGGAC 2 cut(s) 513, 731
FatI CATG 2 cut(s) 322, 349
Fnu4HI GCNGC 3 cut(s) 205, 783, 886
FokI GGATG 2 cut(s) 575, 579
Fsp4HI GCNGC 3 cut(s) 205, 783, 886
FspBI CTAG 1 cut(s) 186
GluI GCNGC 3 cut(s) 205, 783, 886
GsuI CTGGAG 1 cut(s) 687
HaeIII GGCC 3 cut(s) 155, 420, 684
HapII CCGG 1 cut(s) 548
Hin1II CATG 2 cut(s) 326, 353
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 1 cut(s) 559
HpaII CCGG 1 cut(s) 548
Hpy166II GTNNAC 3 cut(s) 511, 586, 646
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 323, 666
Hpy8I GTNNAC 3 cut(s) 511, 586, 646
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 724
HpyCH4V TGCA 5 cut(s) 55, 80, 333, 407, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 274, 404, 659, 668
HpyF3I CTNAG 3 cut(s) 494, 771, 794
HpySE526I ACGT 1 cut(s) 724
Hsp92II CATG 2 cut(s) 326, 353
Kzo9I GATC 1 cut(s) 575
LguI GCTCTTC 1 cut(s) 837
LmnI GCTCC 5 cut(s) 201, 308, 668, 775, 802
Lsp1109I GCAGC 3 cut(s) 216, 769, 897
LweI GCATC 2 cut(s) 22, 814
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 2 cut(s) 370, 626
MalI GATC 1 cut(s) 577
MboI GATC 1 cut(s) 575
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 575
MluCI AATT 4 cut(s) 166, 307, 345, 474
MspI CCGG 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 731
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 1 cut(s) 731
MwoI GCNNNNNNNGC 4 cut(s) 274, 404, 659, 668
NdeII GATC 1 cut(s) 575
NlaIII CATG 2 cut(s) 326, 353
NlaIV GGNNCC 2 cut(s) 304, 791
PagI TCATGA 1 cut(s) 322
PceI AGGCCT 1 cut(s) 155
PciSI GCTCTTC 1 cut(s) 837
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 559
PinAI ACCGGT 1 cut(s) 547
PkrI GCNGC 3 cut(s) 206, 784, 887
PpuMI RGGWCCY 1 cut(s) 790
Psp5II RGGWCCY 1 cut(s) 790
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 2 cut(s) 304, 791
PspPI GGNCC 4 cut(s) 315, 418, 683, 790
PspPPI RGGWCCY 1 cut(s) 790
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 575
SapI GCTCTTC 1 cut(s) 837
SatI GCNGC 3 cut(s) 205, 783, 886
Sau3AI GATC 1 cut(s) 575
Sau96I GGNCC 4 cut(s) 315, 418, 683, 790
ScrFI CCNGG 1 cut(s) 731
SfaNI GCATC 2 cut(s) 22, 814
SinI GGWCC 2 cut(s) 315, 790
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 4 cut(s) 166, 307, 345, 474
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 3 cut(s) 268, 281, 883
SspI AATATT 1 cut(s) 852
SspMI CTAG 1 cut(s) 186
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 729
TaiI ACGT 1 cut(s) 727
TaqII GACCGA 1 cut(s) 303
TasI AATT 4 cut(s) 166, 307, 345, 474
TfiI GAWTC 1 cut(s) 559
TscAI CASTG 3 cut(s) 724, 756, 772
TseI GCWGC 3 cut(s) 204, 782, 885
TspDTI ATGAA 3 cut(s) 311, 338, 339
TspRI CASTG 3 cut(s) 724, 756, 772
VpaK11BI GGWCC 2 cut(s) 315, 790
XagI CCTNNNNNAGG 1 cut(s) 797
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.