Rmu_ssc0000262.1_g000002

Phosphoribosylglycinamide formyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000262.1
Physical Location & Seq
Forward (+)
993 .. 6922
5930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000262.1_g000002.1.cds

Sequence Viewer

Length: 1578 bp
atggaagttcagcatctgctttctgggttttgctcaaccccaatggtgcaaaaccccaagacccaattctttgcaagattgccctcttcttcttcttctgcttctacatattttgctcaatcccacaaatgggtctccttcaaggcctgcccttgtatttcacagagggcattgtctaggatagagtgtaggagcagcacagagagaagtcgggtcattgcttgttctgatagtgaagatttggggaatgggattaggcggaaaaagcttgcggtttttgtgtctggtggaggctccaattttcggtccattcatgaagcctgcattcggggttcaattcatggagacattgttgttttagttactaataaacaaggttgtggaggtgctgactatgcaagagataagggcctcccagttgtgctgtttcccaaaacaaaaaaagagcctgatggaatatctccaattgacctcgttgctgtccttaggggacttgaggttgactttgttcttctggctggctacctacaacttataccggtagagttgattcaagcttatcccagatccatagtgaacatccatccatcacttcttcctgcatttggaggcaaaggtaactatggaatgagggttcacaaagcagtcattgcttctggagcaagatacacaggccctacaatacattttgttgatgagcattatgacactggacgtatcctggctcaaagagttgtcccagtgcgtgctaatgacactgctgaggagctggctgcgagggtccttagggaggagcatcgcttatatgtggaggtcataacagcattatgtgaagagcgaatattttggagggaagatgtcgatagaattagtactattcaggcagaggcaggcgtagtaaacaagtggaagcgagtgatgttctctcggctagtctctcgggtgaccaaatgccatgcccacctcactgctttaaggtccttctccttctctaggatcccacccccaccaggttctgcagatagttttcagcagggtgttaatgcttctgagaatgttgcaaccggaacgggcttggatcatgtcacgggatttcctggaaggaattccaggtctatggactttgttaggggagttatagaccaagatggaagggcaaaccgagcggatcctcagtttcagttccctattagacatatggagcagaatgctgatgtagtccacataaagttgatgcgtaataatacttttgttactgtcacagattcaaaggggaacaagaaacttggggcttcggctggatctgtaccagaaatgaaaggaggagcaaaattgtctcgctatgctgccgaagcaactgcagaacatgttggacggatgtccagaaattttgggttgaaatcagttgtgatgagggtgaaagggtttacttatttcaagaagaagaagcaagctatcttgagctggaaagacggctttactaattccagagtgggtcaaaatccggttatatacattgaagataccacccgaaagccccataatggctgccgactccggaagaagcgtcgtgtctag

Protein Analysis

525

Amino Acids

58.14

Weight (kDa)

9.94

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013535)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1166
AccIII TCCGGA 1 cut(s) 1557
AciI CCGC 3 cut(s) 259, 272, 1166
AclWI GGATC 7 cut(s) 561, 991, 1004, 1086, 1163, 1176, 1309
AcsI RAATTY 2 cut(s) 1105, 1387
AfaI GTAC 2 cut(s) 874, 1308
AfiI CCNNNNNNNGG 9 cut(s) 129, 130, 303, 327, 605, 790, 993, 1010, 1544
AflIII ACRYGT 1 cut(s) 1366
AgeI ACCGGT 1 cut(s) 538
AgsI TTSAA 7 cut(s) 142, 336, 554, 1269, 1399, 1438, 1520
AjnI CCWGG 4 cut(s) 720, 1009, 1096, 1109
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AloI GAACNNNNNNTCC 2 cut(s) 618, 650
AluBI AGCT 5 cut(s) 268, 557, 769, 1454, 1464
AluI AGCT 5 cut(s) 268, 557, 769, 1454, 1464
Alw26I GTCTC 4 cut(s) 139, 339, 940, 1341
AlwI GGATC 7 cut(s) 561, 991, 1004, 1086, 1163, 1176, 1309
AlwNI CAGNNNCTG 2 cut(s) 16, 1016
Ama87I CYCGRG 1 cut(s) 939
Aor13HI TCCGGA 1 cut(s) 1557
AoxI GGCC 3 cut(s) 144, 409, 673
ApeKI GCWGC 4 cut(s) 195, 773, 1346, 1548
ApoI RAATTY 2 cut(s) 1105, 1387
AsiGI ACCGGT 1 cut(s) 538
Asp700I GAANNNNTTC 1 cut(s) 1105
AspS9I GGNCC 5 cut(s) 306, 409, 674, 781, 978
AsuHPI GGTGA 2 cut(s) 955, 1429
AvaI CYCGRG 1 cut(s) 939
AvaII GGWCC 3 cut(s) 306, 781, 978
AxyI CCTNAGG 2 cut(s) 485, 785
BamHI GGATCC 2 cut(s) 996, 1168
BbvCI CCTCAGC 1 cut(s) 762
BbvI GCAGC 4 cut(s) 207, 760, 1333, 1535
BccI CCATC 4 cut(s) 446, 591, 595, 1142
BceAI ACGGC 1 cut(s) 1489
BcgI CGANNNNNNTGC 2 cut(s) 1340, 1374
BciT130I CCWGG 4 cut(s) 722, 1011, 1098, 1111
BciVI GTATCC 1 cut(s) 728
BcoDI GTCTC 4 cut(s) 139, 339, 940, 1341
BfaI CTAG 4 cut(s) 177, 932, 993, 1576
BfmI CTRYAG 2 cut(s) 1017, 1359
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 4 cut(s) 196, 774, 1347, 1549
BlsI GCNGC 4 cut(s) 197, 775, 1348, 1550
BmcAI AGTACT 1 cut(s) 874
Bme1390I CCNGG 4 cut(s) 722, 1011, 1098, 1111
Bme18I GGWCC 3 cut(s) 306, 781, 978
BmeT110I CYCGRG 1 cut(s) 939
BmgT120I GGNCC 5 cut(s) 306, 409, 674, 781, 978
BmiI GGNNCC 4 cut(s) 295, 782, 998, 1170
BmrFI CCNGG 4 cut(s) 722, 1011, 1098, 1111
BmrI ACTGGG 2 cut(s) 410, 734
BmsI GCATC 3 cut(s) 22, 805, 1224
BmuI ACTGGG 2 cut(s) 410, 734
BoxI GACNNNNGTC 1 cut(s) 1378
BpmI CTGGAG 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 762
BpuEI CTTGAG 2 cut(s) 515, 1480
BsaI GGTCTC 1 cut(s) 139
BsaWI WCCGGW 4 cut(s) 538, 1064, 1504, 1557
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 9 cut(s) 129, 130, 303, 327, 605, 790, 993, 1010, 1544
Bse118I RCCGGY 1 cut(s) 538
Bse1I ACTGG 3 cut(s) 416, 715, 740
Bse21I CCTNAGG 2 cut(s) 485, 785
Bse3DI GCAATG 2 cut(s) 216, 648
BseAI TCCGGA 1 cut(s) 1557
BseBI CCWGG 4 cut(s) 722, 1011, 1098, 1111
BseGI GGATG 3 cut(s) 579, 583, 1383
BseLI CCNNNNNNNGG 9 cut(s) 129, 130, 303, 327, 605, 790, 993, 1010, 1544
BseMI GCAATG 2 cut(s) 216, 648
BseMII CTCAG 3 cut(s) 753, 1041, 1187
BseNI ACTGG 3 cut(s) 416, 715, 740
BseRI GAGGAG 3 cut(s) 779, 806, 1338
BseXI GCAGC 4 cut(s) 207, 760, 1333, 1535
BshFI GGCC 3 cut(s) 146, 411, 675
BshTI ACCGGT 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 939
BsiSI CCGG 4 cut(s) 539, 1065, 1505, 1558
BslFI GGGAC 2 cut(s) 504, 722
BslI CCNNNNNNNGG 9 cut(s) 129, 130, 303, 327, 605, 790, 993, 1010, 1544
BsmAI GTCTC 4 cut(s) 139, 339, 940, 1341
BsmFI GGGAC 2 cut(s) 504, 722
BsmI GAATGC 2 cut(s) 324, 1213
BsnI GGCC 3 cut(s) 146, 411, 675
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 939
Bsp13I TCCGGA 1 cut(s) 1557
Bsp143I GATC 5 cut(s) 566, 996, 1078, 1168, 1301
BspACI CCGC 3 cut(s) 259, 272, 1166
BspANI GGCC 3 cut(s) 146, 411, 675
BspCNI CTCAG 3 cut(s) 754, 1042, 1186
BspEI TCCGGA 1 cut(s) 1557
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 4 cut(s) 295, 782, 998, 1170
BspMAI CTGCAG 2 cut(s) 1021, 1363
BspPI GGATC 7 cut(s) 561, 991, 1004, 1086, 1163, 1176, 1309
BspQI GCTCTTC 1 cut(s) 828
BspTNI GGTCTC 1 cut(s) 139
BsrBI CCGCTC 1 cut(s) 1166
BsrDI GCAATG 2 cut(s) 216, 648
BsrFI RCCGGY 1 cut(s) 538
BsrI ACTGG 3 cut(s) 416, 715, 740
BssAI RCCGGY 1 cut(s) 538
BssMI GATC 5 cut(s) 566, 996, 1078, 1168, 1301
Bst2UI CCWGG 4 cut(s) 722, 1011, 1098, 1111
Bst4CI ACNGT 1 cut(s) 1258
Bst6I CTCTTC 2 cut(s) 91, 828
BstAPI GCANNNNNTGC 1 cut(s) 650
BstC8I GCNNGC 8 cut(s) 148, 270, 322, 520, 747, 771, 892, 1452
BstDEI CTNAG 5 cut(s) 485, 762, 785, 1050, 1173
BstEII GGTNACC 1 cut(s) 943
BstENI CCTNNNNNAGG 2 cut(s) 788, 991
BstF5I GGATG 3 cut(s) 579, 583, 1383
BstKTI GATC 5 cut(s) 569, 999, 1081, 1171, 1304
BstMAI GTCTC 4 cut(s) 139, 339, 940, 1341
BstMBI GATC 5 cut(s) 566, 996, 1078, 1168, 1301
BstMWI GCNNNNNNNGC 6 cut(s) 265, 395, 650, 659, 1163, 1352
BstNI CCWGG 4 cut(s) 722, 1011, 1098, 1111
BstNSI RCATGY 1 cut(s) 1370
BstPAI GACNNNNGTC 1 cut(s) 1378
BstPI GGTNACC 1 cut(s) 943
BstSCI CCNGG 4 cut(s) 720, 1009, 1096, 1109
BstSFI CTRYAG 2 cut(s) 1017, 1359
BstV1I GCAGC 4 cut(s) 207, 760, 1333, 1535
BstX2I RGATCY 4 cut(s) 566, 996, 1168, 1301
BstXI CCANNNNNNTGG 1 cut(s) 1117
BstYI RGATCY 4 cut(s) 566, 996, 1168, 1301
Bsu36I CCTNAGG 2 cut(s) 485, 785
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 3 cut(s) 146, 411, 675
BtgZI GCGATG 1 cut(s) 782
BtsCI GGATG 3 cut(s) 579, 583, 1383
BtsI GCAGTG 2 cut(s) 756, 966
BtsIMutI CAGTG 4 cut(s) 708, 747, 756, 966
Cac8I GCNNGC 8 cut(s) 148, 270, 322, 520, 747, 771, 892, 1452
CaiI CAGNNNCTG 2 cut(s) 16, 1016
CciI TCATGA 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 538
Cfr13I GGNCC 5 cut(s) 306, 409, 674, 781, 978
CseI GACGC 1 cut(s) 1556
CsiI ACCWGGT 1 cut(s) 1009
Csp6I GTAC 2 cut(s) 873, 1307
CspAI ACCGGT 1 cut(s) 538
CviAII CATG 5 cut(s) 314, 341, 956, 1082, 1367
CviQI GTAC 2 cut(s) 873, 1307
DdeI CTNAG 5 cut(s) 485, 762, 785, 1050, 1173
DpnI GATC 5 cut(s) 568, 998, 1080, 1170, 1303
DpnII GATC 5 cut(s) 566, 996, 1078, 1168, 1301
Eam1104I CTCTTC 2 cut(s) 91, 828
EarI CTCTTC 2 cut(s) 91, 828
EciI GGCGGA 1 cut(s) 274
Eco147I AGGCCT 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 3 cut(s) 306, 781, 978
Eco81I CCTNAGG 2 cut(s) 485, 785
Eco88I CYCGRG 1 cut(s) 939
Eco91I GGTNACC 1 cut(s) 943
EcoNI CCTNNNNNAGG 2 cut(s) 788, 991
EcoO109I RGGNCCY 4 cut(s) 409, 674, 781, 978
EcoO65I GGTNACC 1 cut(s) 943
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 4 cut(s) 720, 1009, 1096, 1109
FaeI CATG 5 cut(s) 317, 344, 959, 1085, 1370
FaqI GGGAC 2 cut(s) 504, 722
FatI CATG 5 cut(s) 313, 340, 955, 1081, 1366
FauNDI CATATG 1 cut(s) 1197
Fnu4HI GCNGC 4 cut(s) 196, 774, 1347, 1549
FokI GGATG 3 cut(s) 566, 570, 1390
Fsp4HI GCNGC 4 cut(s) 196, 774, 1347, 1549
FspBI CTAG 4 cut(s) 177, 932, 993, 1576
GluI GCNGC 4 cut(s) 196, 774, 1347, 1549
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 3 cut(s) 146, 411, 675
HapII CCGG 4 cut(s) 539, 1065, 1505, 1558
HgaI GACGC 1 cut(s) 1556
Hin1II CATG 5 cut(s) 317, 344, 959, 1085, 1370
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 2 cut(s) 266, 555
HinfI GANTC 3 cut(s) 550, 1265, 1554
HpaII CCGG 4 cut(s) 539, 1065, 1505, 1558
HphI GGTGA 2 cut(s) 955, 1429
Hpy166II GTNNAC 6 cut(s) 502, 577, 637, 901, 1222, 1428
Hpy188I TCNGA 2 cut(s) 229, 1051
Hpy188III TCNNGA 7 cut(s) 314, 657, 1383, 1438, 1459, 1488, 1558
Hpy8I GTNNAC 6 cut(s) 502, 577, 637, 901, 1222, 1428
Hpy99I CGWCG 1 cut(s) 1572
HpyAV CCTTC 5 cut(s) 148, 991, 997, 1095, 1146
HpyCH4III ACNGT 1 cut(s) 1258
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 8 cut(s) 49, 74, 324, 398, 602, 1019, 1061, 1361
HpyF10VI GCNNNNNNNGC 6 cut(s) 265, 395, 650, 659, 1163, 1352
HpyF3I CTNAG 5 cut(s) 485, 762, 785, 1050, 1173
HpySE526I ACGT 1 cut(s) 715
Hsp92II CATG 5 cut(s) 317, 344, 959, 1085, 1370
Kpn2I TCCGGA 1 cut(s) 1557
Kzo9I GATC 5 cut(s) 566, 996, 1078, 1168, 1301
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 7 cut(s) 192, 299, 659, 766, 793, 1201, 1325
Lsp1109I GCAGC 4 cut(s) 207, 760, 1333, 1535
LweI GCATC 3 cut(s) 22, 805, 1224
MabI ACCWGGT 1 cut(s) 1009
MaeI CTAG 4 cut(s) 177, 932, 993, 1576
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 6 cut(s) 361, 617, 943, 1084, 1252, 1258
MalI GATC 5 cut(s) 568, 998, 1080, 1170, 1303
MbiI CCGCTC 1 cut(s) 1166
MboI GATC 5 cut(s) 566, 996, 1078, 1168, 1301
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 4 cut(s) 566, 996, 1168, 1301
MluCI AATT 9 cut(s) 65, 298, 336, 465, 867, 1105, 1331, 1387, 1483
MlyI GAGTC 1 cut(s) 1548
MmeI TCCRAC 1 cut(s) 1351
MroI TCCGGA 1 cut(s) 1557
MroXI GAANNNNTTC 1 cut(s) 1105
MseI TTAA 2 cut(s) 974, 1041
MspI CCGG 4 cut(s) 539, 1065, 1505, 1558
MspR9I CCNGG 4 cut(s) 722, 1011, 1098, 1111
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 2 cut(s) 324, 1213
MvaI CCWGG 4 cut(s) 722, 1011, 1098, 1111
MwoI GCNNNNNNNGC 6 cut(s) 265, 395, 650, 659, 1163, 1352
NdeI CATATG 1 cut(s) 1197
NdeII GATC 5 cut(s) 566, 996, 1078, 1168, 1301
NlaIII CATG 5 cut(s) 317, 344, 959, 1085, 1370
NlaIV GGNNCC 4 cut(s) 295, 782, 998, 1170
NmeAIII GCCGAG 1 cut(s) 907
NmuCI GTSAC 3 cut(s) 943, 1084, 1258
NspI RCATGY 1 cut(s) 1370
PagI TCATGA 1 cut(s) 313
PceI AGGCCT 1 cut(s) 146
PciI ACATGT 1 cut(s) 1366
PciSI GCTCTTC 1 cut(s) 828
PctI GAATGC 2 cut(s) 324, 1213
PdmI GAANNNNTTC 1 cut(s) 1105
PfeI GAWTC 2 cut(s) 550, 1265
PfoI TCCNGGA 1 cut(s) 1096
PinAI ACCGGT 1 cut(s) 538
PkrI GCNGC 4 cut(s) 197, 775, 1348, 1550
PleI GAGTC 1 cut(s) 1548
PpsI GAGTC 1 cut(s) 1548
PpuMI RGGWCCY 2 cut(s) 781, 978
PscI ACATGT 1 cut(s) 1366
PshAI GACNNNNGTC 1 cut(s) 1378
Psp5II RGGWCCY 2 cut(s) 781, 978
Psp6I CCWGG 4 cut(s) 720, 1009, 1096, 1109
PspEI GGTNACC 1 cut(s) 943
PspGI CCWGG 4 cut(s) 720, 1009, 1096, 1109
PspN4I GGNNCC 4 cut(s) 295, 782, 998, 1170
PspPI GGNCC 5 cut(s) 306, 409, 674, 781, 978
PspPPI RGGWCCY 2 cut(s) 781, 978
PstI CTGCAG 2 cut(s) 1021, 1363
PstNI CAGNNNCTG 2 cut(s) 16, 1016
PsuI RGATCY 4 cut(s) 566, 996, 1168, 1301
RsaI GTAC 2 cut(s) 874, 1308
RsaNI GTAC 2 cut(s) 873, 1307
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 2 cut(s) 974, 1041
SatI GCNGC 4 cut(s) 196, 774, 1347, 1549
Sau3AI GATC 5 cut(s) 566, 996, 1078, 1168, 1301
Sau96I GGNCC 5 cut(s) 306, 409, 674, 781, 978
ScaI AGTACT 1 cut(s) 874
SchI GAGTC 1 cut(s) 1548
ScrFI CCNGG 4 cut(s) 722, 1011, 1098, 1111
SexAI ACCWGGT 1 cut(s) 1009
SfaNI GCATC 3 cut(s) 22, 805, 1224
SfcI CTRYAG 2 cut(s) 1017, 1359
SinI GGWCC 3 cut(s) 306, 781, 978
SmlI CTYRAG 2 cut(s) 494, 1459
SmoI CTYRAG 2 cut(s) 494, 1459
Sse9I AATT 9 cut(s) 65, 298, 336, 465, 867, 1105, 1331, 1387, 1483
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 3 cut(s) 259, 272, 1166
SspI AATATT 1 cut(s) 843
SspMI CTAG 4 cut(s) 177, 932, 993, 1576
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 4 cut(s) 720, 1009, 1096, 1109
TaaI ACNGT 1 cut(s) 1258
TaiI ACGT 1 cut(s) 718
TaqI TCGA 1 cut(s) 861
TaqII GACCGA 1 cut(s) 294
TasI AATT 9 cut(s) 65, 298, 336, 465, 867, 1105, 1331, 1387, 1483
TatI WGTACW 1 cut(s) 872
TfiI GAWTC 2 cut(s) 550, 1265
Tru1I TTAA 2 cut(s) 974, 1041
Tru9I TTAA 2 cut(s) 974, 1041
TscAI CASTG 4 cut(s) 715, 747, 763, 973
TseFI GTSAC 3 cut(s) 943, 1084, 1258
TseI GCWGC 4 cut(s) 195, 773, 1346, 1548
Tsp45I GTSAC 3 cut(s) 943, 1084, 1258
TspDTI ATGAA 4 cut(s) 302, 329, 330, 1331
TspGWI ACGGA 1 cut(s) 1390
TspRI CASTG 4 cut(s) 715, 747, 763, 973
VpaK11BI GGWCC 3 cut(s) 306, 781, 978
XagI CCTNNNNNAGG 2 cut(s) 788, 991
XapI RAATTY 2 cut(s) 1105, 1387
XceI RCATGY 1 cut(s) 1370
XmnI GAANNNNTTC 1 cut(s) 1105
XspI CTAG 4 cut(s) 177, 932, 993, 1576
ZrmI AGTACT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.