Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Reverse (-)

11255836 .. 11258814

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAAGCTATAAGAAAGCAAGCTGCGAAGCTCAGAGAGCAAGTCGCGAGGCAACAGCAAGCGGTTTTGAAGCATTTAGGGCATGTTAATGCTGATGCTGTTGTTGTTGATGAAGAAGAGCTTCATTGTCATCAGAAACTTCAAGATCTTTATAGCTCTACTAAAGCTGCTAAGCGTTTGCAAAGGAACATTGTTCGTGGACTCGAAGGTTTCATTGCGACTGGCACAAAGGTTGTTGAGATAGGGTTGAAGTTTGCTGAAGATTTCAAGAAATATGGAGATGAGAATCCTGATGCTAATACTCCTCTATCAAGAGTCGCACATCACTTTGGGACCTCTTACAAGTCGGTGGAAGGCGAGAGGGAAACTCTCCTCGGAGTTCTTAGTGAGCAGGTTTGTGAGCCAATTCGTACAATGATATATAGTGCGCCTTTGGAGGATGCTCGGCATTTGGTGAATCACTATGACAGGCTGAGACAAGAAGTCGAAGCTCAGGCAACTGATGTACTGAGGAGAAGATCAAAGTTGAAGGAATCTGATATTTCTGAAGAAGCCTACATAAAACTTAAGAATTCTGAATCGAGATTGGCTGAGCTCAAATCAAGTATGAAAACTCTTGGTAAAGAAGCTACTAAGGCCATGTTGGAAGTCGACGATCAGCAGCAGAACGTAACTTCTCAGCGCCTCCGTGCTCTGGTTGAAGCTGAAAGATCATATCATCGTAATGCTCTTGATATCCTCGACAAGCTACATTCCGAGATGATTGCTGAGGAAGAAGCTATAGGATCATCACCAAAGTCACTACCTTTACATATAGAGGATAGTGCTTCTCTTCCCCAACAAGAACCGAATTCAAATTCCTCAGGAGAGATCAAATCAAATCCCTTGGGAAAGATCAAAGCAAGTCGTCGAGAAGAAATCAAGTCTAATCCCCAAGAAGTAACCAAACCTAGTCCCAAGGACGAAATGAAGTCCAGTCCACAAGAAGAAACCAAATCCAATCATCAGAAAGAAATTAAGTCTAGTCCACAGGAAGAGATCAAGAAGTCCAATGGGTCTGATGATCATCACAATCATCAACTTCTCAGCCAGAATGATTCCTACTTTCTTGCAAAGGTTGTGCACCCGTTTGATGCTCAAGCCCCAGGGGAACTCAGTCTCGCTGTCGATGATTATGTAATTGTGCGACAGGTGGCTGGTACAGGCTGGTCAGAAGGAGAATACAAAGGCAAAGCTGGATGGTTTCCGTCTGCGTACGTAGAGAAACAAGAGAAAGCTCCGGCAAGCAAGATCGTGGAATCAAACTCCAAGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

439

Amino Acids

49.26

Weight (kDa)

6.19

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_2	PF07653	371 - 423	6.3e-06	Variant SH3 domain
SH3_9	PF14604	373 - 421	2.1e-10	Variant SH3 domain
SH3_1	PF00018	373 - 417	5.5e-07	SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	651
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	793
AcsI	RAATTY	3 cut(s)	571, 850, 856
AcuI	CTGAAG	2 cut(s)	279, 567
AfaI	GTAC	4 cut(s)	412, 507, 1201, 1256
AfiI	CCNNNNNNNGG	1 cut(s)	694
AflII	CTTAAG	1 cut(s)	566
AgsI	TTSAA	7 cut(s)	70, 143, 250, 268, 529, 701, 855
AhdI	GACNNNNNGTC	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	1144
Alw21I	GWGCWC	3 cut(s)	597, 694, 1125
Alw26I	GTCTC	2 cut(s)	469, 1163
Alw44I	GTGCAC	1 cut(s)	1121
AlwI	GGATC	1 cut(s)	793
AoxI	GGCC	1 cut(s)	636
ApaLI	GTGCAC	1 cut(s)	1121
ApeKI	GCWGC	3 cut(s)	23, 167, 661
ApoI	RAATTY	3 cut(s)	571, 850, 856
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	430, 684
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	466, 783
AvaII	GGWCC	1 cut(s)	333
AxyI	CCTNAGG	1 cut(s)	862
BaeGI	GKGCMC	1 cut(s)	1125
BanII	GRGCYC	1 cut(s)	597
Bbv12I	GWGCWC	3 cut(s)	597, 694, 1125
BbvCI	CCTCAGC	1 cut(s)	768
BbvI	GCAGC	3 cut(s)	10, 154, 673
BccI	CCATC	1 cut(s)	1233
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	1 cut(s)	1146
BclI	TGATCA	1 cut(s)	1063
BcoDI	GTCTC	2 cut(s)	469, 1163
BfaI	CTAG	2 cut(s)	951, 1023
BfmI	CTRYAG	1 cut(s)	780
BfoI	RGCGCY	1 cut(s)	685
BfrI	CTTAAG	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	382
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	3 cut(s)	24, 168, 662
BlpI	GCTNAGC	2 cut(s)	171, 591
BlsI	GCNGC	3 cut(s)	25, 169, 663
Bme1390I	CCNGG	1 cut(s)	1146
Bme18I	GGWCC	1 cut(s)	333
BmeRI	GACNNNNNGTC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	1146
BmsI	GCATC	4 cut(s)	85, 283, 430, 1123
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
Bpu10I	CCTNAGC	2 cut(s)	492, 768
Bpu1102I	GCTNAGC	2 cut(s)	171, 591
BpuEI	CTTGAG	1 cut(s)	1122
BsaAI	YACGTR	1 cut(s)	1258
BsaBI	GATNNNNATC	2 cut(s)	285, 1065
BsaJI	CCNNGG	5 cut(s)	373, 885, 957, 1144, 1145
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	2 cut(s)	226, 975
Bse21I	CCTNAGG	1 cut(s)	862
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	2 cut(s)	285, 1065
BseBI	CCWGG	1 cut(s)	1146
BseDI	CCNNGG	5 cut(s)	373, 885, 957, 1144, 1145
BseGI	GGATG	2 cut(s)	445, 1244
BseJI	GATNNNNATC	2 cut(s)	285, 1065
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMI	GCAATG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	226, 975
BseRI	GAGGAG	3 cut(s)	294, 362, 526
BseSI	GKGCMC	1 cut(s)	1125
BseXI	GCAGC	3 cut(s)	10, 154, 673
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	638
BsiHKAI	GWGCWC	3 cut(s)	597, 694, 1125
BsiSI	CCGG	1 cut(s)	1280
BsiWI	CGTACG	1 cut(s)	1254
BslFI	GGGAC	2 cut(s)	346, 939
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	2 cut(s)	469, 1163
BsmFI	GGGAC	2 cut(s)	346, 939
BsnI	GGCC	1 cut(s)	638
Bsp1286I	GDGCHC	3 cut(s)	597, 694, 1125
Bsp1720I	GCTNAGC	2 cut(s)	171, 591
Bsp68I	TCGCGA	1 cut(s)	47
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	638
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	793
BspQI	GCTCTTC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	226, 975
BssECI	CCNNGG	5 cut(s)	373, 885, 957, 1144, 1145
BssT1I	CCWWGG	2 cut(s)	885, 957
Bst2UI	CCWGG	1 cut(s)	1146
Bst4CI	ACNGT	1 cut(s)	1317
Bst6I	CTCTTC	3 cut(s)	111, 837, 1029
BstAFI	CTTAAG	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	1258
BstC8I	GCNNGC	3 cut(s)	21, 60, 1285
BstF5I	GGATG	2 cut(s)	445, 1244
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	685
BstHHI	GCGC	2 cut(s)	430, 684
BstMAI	GTCTC	2 cut(s)	469, 1163
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 79, 635
BstNI	CCWGG	1 cut(s)	1146
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	1144
BstSFI	CTRYAG	1 cut(s)	780
BstSLI	GKGCMC	1 cut(s)	1125
BstSNI	TACGTA	1 cut(s)	1258
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	10, 154, 673
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	862
BsuRI	GGCC	1 cut(s)	638
BtsCI	GGATG	2 cut(s)	445, 1244
BtuMI	TCGCGA	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	21, 60, 1285
CfoI	GCGC	2 cut(s)	430, 684
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	4 cut(s)	411, 506, 1200, 1255
CviAII	CATG	2 cut(s)	83, 640
CviQI	GTAC	4 cut(s)	411, 506, 1200, 1255
DriI	GACNNNNNGTC	1 cut(s)	482
Eam1104I	CTCTTC	3 cut(s)	111, 837, 1029
Eam1105I	GACNNNNNGTC	1 cut(s)	482
EarI	CTCTTC	3 cut(s)	111, 837, 1029
Ecl136II	GAGCTC	1 cut(s)	595
Eco105I	TACGTA	1 cut(s)	1258
Eco130I	CCWWGG	2 cut(s)	885, 957
Eco24I	GRGCYC	1 cut(s)	597
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	595
Eco57I	CTGAAG	2 cut(s)	279, 567
Eco81I	CCTNAGG	1 cut(s)	862
EcoICRI	GAGCTC	1 cut(s)	595
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	571, 850
EcoRII	CCWGG	1 cut(s)	1144
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	2 cut(s)	885, 957
EcoT38I	GRGCYC	1 cut(s)	597
ErhI	CCWWGG	2 cut(s)	885, 957
FaeI	CATG	2 cut(s)	86, 643
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	2 cut(s)	346, 939
FatI	CATG	2 cut(s)	82, 639
FbaI	TGATCA	1 cut(s)	1063
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	3 cut(s)	24, 168, 662
FokI	GGATG	2 cut(s)	452, 1251
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	3 cut(s)	24, 168, 662
FspBI	CTAG	2 cut(s)	951, 1023
GlaI	GCGC	2 cut(s)	429, 683
GluI	GCNGC	3 cut(s)	24, 168, 662
HaeII	RGCGCY	1 cut(s)	685
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	1 cut(s)	1280
HhaI	GCGC	2 cut(s)	430, 684
Hin1II	CATG	2 cut(s)	86, 643
Hin6I	GCGC	2 cut(s)	428, 682
HinP1I	GCGC	2 cut(s)	428, 682
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	8 cut(s)	201, 286, 315, 457, 533, 578, 1097, 1298
HpaII	CCGG	1 cut(s)	1280
HphI	GGTGA	2 cut(s)	466, 783
Hpy166II	GTNNAC	5 cut(s)	200, 652, 980, 1028, 1123
Hpy8I	GTNNAC	5 cut(s)	200, 652, 980, 1028, 1123
Hpy99I	CGWCG	2 cut(s)	656, 912
HpyAV	CCTTC	4 cut(s)	200, 347, 523, 1208
HpyCH4III	ACNGT	1 cut(s)	1317
HpyCH4IV	ACGT	2 cut(s)	669, 1257
HpyCH4V	TGCA	3 cut(s)	181, 1112, 1123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 79, 635
HpySE526I	ACGT	2 cut(s)	669, 1257
Hsp92II	CATG	2 cut(s)	86, 643
HspAI	GCGC	2 cut(s)	428, 682
Ksp22I	TGATCA	1 cut(s)	1063
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	1282
Lsp1109I	GCAGC	3 cut(s)	10, 154, 673
LweI	GCATC	4 cut(s)	85, 283, 430, 1123
MaeI	CTAG	2 cut(s)	951, 1023
MaeII	ACGT	2 cut(s)	669, 1257
MaeIII	GTNAC	3 cut(s)	670, 798, 940
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	3 cut(s)	597, 694, 1125
MluCI	AATT	6 cut(s)	405, 571, 850, 856, 1014, 1179
MlyI	GAGTC	2 cut(s)	195, 324
MmeI	TCCRAC	1 cut(s)	624
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	87, 567, 1017
MslI	CAYNNNNRTG	2 cut(s)	87, 723
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	1 cut(s)	1280
MspR9I	CCNGG	1 cut(s)	1146
MvaI	CCWGG	1 cut(s)	1146
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	37, 79, 635
NlaIII	CATG	2 cut(s)	86, 643
NlaIV	GGNNCC	1 cut(s)	334
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	798
NruI	TCGCGA	1 cut(s)	47
NspI	RCATGY	1 cut(s)	86
PasI	CCCWGGG	1 cut(s)	1145
PciSI	GCTCTTC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	6 cut(s)	286, 457, 533, 578, 1097, 1298
Pfl23II	CGTACG	1 cut(s)	1254
PkrI	GCNGC	3 cut(s)	25, 169, 663
PleI	GAGTC	2 cut(s)	195, 323
PpsI	GAGTC	2 cut(s)	195, 323
Ppu21I	YACGTR	1 cut(s)	1258
PpuMI	RGGWCCY	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	1144
PspGI	CCWGG	1 cut(s)	1144
PspLI	CGTACG	1 cut(s)	1254
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	333
PspPPI	RGGWCCY	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	145
RruI	TCGCGA	1 cut(s)	47
RsaI	GTAC	4 cut(s)	412, 507, 1201, 1256
RsaNI	GTAC	4 cut(s)	411, 506, 1200, 1255
RseI	CAYNNNNRTG	2 cut(s)	87, 723
SacI	GAGCTC	1 cut(s)	597
SalI	GTCGAC	1 cut(s)	650
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	87, 567, 1017
SatI	GCNGC	3 cut(s)	24, 168, 662
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	2 cut(s)	195, 324
ScrFI	CCNGG	1 cut(s)	1146
SduI	GDGCHC	3 cut(s)	597, 694, 1125
SfaNI	GCATC	4 cut(s)	85, 283, 430, 1123
SfcI	CTRYAG	1 cut(s)	780
SinI	GGWCC	1 cut(s)	333
SmiMI	CAYNNNNRTG	2 cut(s)	87, 723
SmlI	CTYRAG	2 cut(s)	566, 1137
SmoI	CTYRAG	2 cut(s)	566, 1137
SnaBI	TACGTA	1 cut(s)	1258
Sse9I	AATT	6 cut(s)	405, 571, 850, 856, 1014, 1179
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	951, 1023
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	1144
StyI	CCWWGG	2 cut(s)	885, 957
TaaI	ACNGT	1 cut(s)	1317
TaiI	ACGT	2 cut(s)	672, 1260
TaqI	TCGA	7 cut(s)	204, 486, 581, 651, 741, 910, 1167
TasI	AATT	6 cut(s)	405, 571, 850, 856, 1014, 1179
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	6 cut(s)	286, 457, 533, 578, 1097, 1298
Tru1I	TTAA	3 cut(s)	87, 567, 1017
Tru9I	TTAA	3 cut(s)	87, 567, 1017
TseFI	GTSAC	1 cut(s)	798
TseI	GCWGC	3 cut(s)	23, 167, 661
Tsp45I	GTSAC	1 cut(s)	798
TspDTI	ATGAA	5 cut(s)	113, 126, 202, 623, 983
TspGWI	ACGGA	2 cut(s)	677, 1236
Vha464I	CTTAAG	1 cut(s)	566
VneI	GTGCAC	1 cut(s)	1121
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	3 cut(s)	571, 850, 856
XceI	RCATGY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	951, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.