Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Reverse (-)

15733960 .. 15740079

Gene Structure 6120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24360.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGTCTATACGGAAACAAGCCACCAAGCTCAGGGAGAAAGTCGCTAAGCAACAGCAGGCTGTATTGAAACGATTGGGAAGTTTAAGTAATGAAGCTGTTATGGTTGATGAAGCTGAAATTCTGTGCCACCAACAACTTCATGATTTGTACACTTCTACGAGGGCTGCGAAGCATTTTCAGCGGAGTATTGTTCGGGGAGTTGAAGCTTTTATTTCCATCAGCTCAAAACAAATGGAAATAGTAAGAAAGTTGGCTGAAGATTGCCGCAAATATGGAGCTGAAATTCAGAATACTAGTACCCCTCTGTTTAGAGCTTCAACTTACTTTGGTACTTCACACGATTCAATTGAAGAAGAGAGAGAGACTTTCCTTAGGATCCTAGGTGAGCAGGTTTATGAACCTTTACGGACACAACTAACTGGGTCTCCTTTGGAGGATGCTCGTCACTTGACTCATCGTTATGATAAATTGCGTCAGGAGGTCGAAGCCCAGGTAGCTGAAGTATTGAGGCGTCGATTAAAATCCAAAGCTTCTGGATCTTCTGAAAGTTCCTTGAAGCTTCAAAATACAGAAGCGAGATTGACAGAGCTTAAATCCACCGCAGTGGCACTTGGCCGAGAAGCGACTTCTGCAATGTTGTCAGTTGAGGCTCAGCAGCAACAGATGACTTTCCAGAAGCTCCTTACTATGGTTGATGCTGAAAGATCTTATCATCAACATGCACTTGCTATTCTAGAGAAGTTACATGCTGAGATGATTCTGGAGAAGCTACCACAAGACTTTTCATTAGAATCAGAGAAAGTGCATCCAAATGCTAGTGCAAAGAGATCGGATGAGAAGCTACCACAAGACTTTTCATTAGAGTCAGAGAAAGTGCATCCAAATGCTAGTTCAAAGAGATCGGATGATCATGAACAACTTACTCAAGATGACAATTTTTTCATTGCAAGAGCTATACACCCATTTGATGCTCAAGCAGACGGAGAATTGAATCTATCAGTTGATGATTATGTTGTGGTTCGTGAGGTGGGCCCTAATGGATGGTCTAAAGGGGAATGCAAGGGCAAGGCCGGGTGGTTTCCATCTGCGTATATAGAGAGACAGGAAAAGGCACTAGTGAGCAAATTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

379

Amino Acids

42.85

Weight (kDa)

6.38

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AciI	CCGC	3 cut(s)	184, 268, 603
AclWI	GGATC	3 cut(s)	373, 386, 547
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	120, 285
AcuI	CTGAAG	2 cut(s)	279, 522
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	3 cut(s)	152, 301, 334
AfiI	CCNNNNNNNGG	2 cut(s)	33, 691
AgsI	TTSAA	9 cut(s)	70, 206, 321, 348, 353, 559, 566, 897, 994
AhlI	ACTAGT	2 cut(s)	296, 1117
AjnI	CCWGG	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	877, 909
AleI	CACNNNNGTG	1 cut(s)	605
Alw26I	GTCTC	3 cut(s)	359, 432, 1096
AlwI	GGATC	3 cut(s)	373, 386, 547
AoxI	GGCC	3 cut(s)	616, 1033, 1071
ApaI	GGGCCC	1 cut(s)	1037
ApeKI	GCWGC	2 cut(s)	167, 658
ApoI	RAATTY	2 cut(s)	120, 285
AspA2I	CCTAGG	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	1033, 1034
AsuC2I	CCSGG	1 cut(s)	1075
AsuHPI	GGTGA	1 cut(s)	398
AvrII	CCTAGG	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	1037
BamHI	GGATCC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	1037
BbvI	GCAGC	2 cut(s)	154, 670
BccI	CCATC	3 cut(s)	227, 1038, 1093
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	910
BcnI	CCSGG	1 cut(s)	1075
BcoDI	GTCTC	3 cut(s)	359, 432, 1096
BcuI	ACTAGT	2 cut(s)	296, 1117
BfaI	CTAG	6 cut(s)	297, 383, 737, 819, 891, 1118
BfuAI	ACCTGC	1 cut(s)	382
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	3 cut(s)	168, 268, 659
BlnI	CCTAGG	1 cut(s)	382
BlpI	GCTNAGC	2 cut(s)	48, 654
BlsI	GCNGC	3 cut(s)	169, 269, 660
Bme1390I	CCNGG	2 cut(s)	494, 1075
BmgT120I	GGNCC	2 cut(s)	1033, 1034
BmiI	GGNNCC	2 cut(s)	380, 1035
BmrFI	CCNGG	2 cut(s)	494, 1075
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	5 cut(s)	430, 688, 817, 889, 961
BmuI	ACTGGG	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	785
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu1102I	GCTNAGC	2 cut(s)	48, 654
BpuEI	CTTGAG	2 cut(s)	912, 960
BpuMI	CCSGG	1 cut(s)	1075
BsaBI	GATNNNNATC	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	382, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 691
Bse1I	ACTGG	1 cut(s)	427
Bse21I	CCTNAGG	1 cut(s)	374
Bse3DI	GCAATG	2 cut(s)	642, 945
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	382, 492
BseGI	GGATG	6 cut(s)	445, 808, 841, 880, 913, 1049
BseJI	GATNNNNATC	1 cut(s)	523
BseLI	CCNNNNNNNGG	2 cut(s)	33, 691
BseMI	GCAATG	2 cut(s)	642, 945
BseMII	CTCAG	3 cut(s)	46, 668, 744
BseNI	ACTGG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	1037
BseXI	GCAGC	2 cut(s)	154, 670
BshFI	GGCC	3 cut(s)	618, 1035, 1073
BsiSI	CCGG	1 cut(s)	1074
BslI	CCNNNNNNNGG	2 cut(s)	33, 691
BsmAI	GTCTC	3 cut(s)	359, 432, 1096
BsmI	GAATGC	1 cut(s)	1064
BsnI	GGCC	3 cut(s)	618, 1035, 1073
Bso31I	GGTCTC	1 cut(s)	432
Bsp120I	GGGCCC	1 cut(s)	1033
Bsp1286I	GDGCHC	1 cut(s)	1037
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	6 cut(s)	378, 539, 707, 830, 902, 910
Bsp1720I	GCTNAGC	2 cut(s)	48, 654
BspACI	CCGC	3 cut(s)	184, 268, 603
BspANI	GGCC	3 cut(s)	618, 1035, 1073
BspCNI	CTCAG	3 cut(s)	45, 667, 745
BspHI	TCATGA	2 cut(s)	142, 913
BspLI	GGNNCC	2 cut(s)	380, 1035
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	3 cut(s)	373, 386, 547
BspTNI	GGTCTC	1 cut(s)	432
BsrDI	GCAATG	2 cut(s)	642, 945
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	382, 492
BssMI	GATC	6 cut(s)	378, 539, 707, 830, 902, 910
BssNI	GRCGYC	1 cut(s)	514
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	514
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	5 cut(s)	32, 48, 374, 654, 753
BstF5I	GGATG	6 cut(s)	445, 808, 841, 880, 913, 1049
BstKTI	GATC	6 cut(s)	381, 542, 710, 833, 905, 913
BstMAI	GTCTC	3 cut(s)	359, 432, 1096
BstMBI	GATC	6 cut(s)	378, 539, 707, 830, 902, 910
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 497, 632
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	2 cut(s)	725, 752
BstSCI	CCNGG	2 cut(s)	492, 1073
BstSLI	GKGCMC	1 cut(s)	1037
BstV1I	GCAGC	2 cut(s)	154, 670
BstX2I	RGATCY	3 cut(s)	378, 539, 707
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	3 cut(s)	378, 539, 707
Bsu36I	CCTNAGG	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	618, 1035, 1073
BtsCI	GGATG	6 cut(s)	445, 808, 841, 880, 913, 1049
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	60
CciI	TCATGA	2 cut(s)	142, 913
Cfr13I	GGNCC	2 cut(s)	1033, 1034
CseI	GACGC	2 cut(s)	464, 503
Csp6I	GTAC	3 cut(s)	151, 300, 333
CviAII	CATG	4 cut(s)	143, 722, 749, 914
CviQI	GTAC	3 cut(s)	151, 300, 333
DdeI	CTNAG	5 cut(s)	32, 48, 374, 654, 753
DpnI	GATC	6 cut(s)	380, 541, 709, 832, 904, 912
DpnII	GATC	6 cut(s)	378, 539, 707, 830, 902, 910
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	1037
Eco31I	GGTCTC	1 cut(s)	432
Eco57I	CTGAAG	2 cut(s)	279, 522
Eco81I	CCTNAGG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	1034
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	1037
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	4 cut(s)	146, 725, 752, 917
FatI	CATG	4 cut(s)	142, 721, 748, 913
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	3 cut(s)	168, 268, 659
FokI	GGATG	6 cut(s)	452, 795, 848, 867, 920, 1056
FriOI	GRGCYC	1 cut(s)	1037
Fsp4HI	GCNGC	3 cut(s)	168, 268, 659
FspBI	CTAG	6 cut(s)	297, 383, 737, 819, 891, 1118
GluI	GCNGC	3 cut(s)	168, 268, 659
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	3 cut(s)	618, 1035, 1073
HapII	CCGG	1 cut(s)	1074
HgaI	GACGC	2 cut(s)	464, 503
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	4 cut(s)	146, 725, 752, 917
HindIII	AAGCTT	3 cut(s)	207, 531, 560
HinfI	GANTC	7 cut(s)	5, 344, 454, 760, 794, 866, 994
HpaII	CCGG	1 cut(s)	1074
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	6 cut(s)	291, 547, 799, 835, 871, 907
Hpy188III	TCNNGA	9 cut(s)	143, 479, 537, 676, 737, 764, 914, 929, 1025
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	519
HpyCH4V	TGCA	7 cut(s)	635, 725, 808, 824, 880, 950, 1062
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 497, 632
HpyF3I	CTNAG	5 cut(s)	32, 48, 374, 654, 753
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	4 cut(s)	146, 725, 752, 917
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	6 cut(s)	378, 539, 707, 830, 902, 910
LmnI	GCTCC	2 cut(s)	278, 687
Lsp1109I	GCAGC	2 cut(s)	154, 670
LweI	GCATC	5 cut(s)	430, 688, 817, 889, 961
MaeI	CTAG	6 cut(s)	297, 383, 737, 819, 891, 1118
MaeIII	GTNAC	2 cut(s)	446, 744
MalI	GATC	6 cut(s)	380, 541, 709, 832, 904, 912
MboI	GATC	6 cut(s)	378, 539, 707, 830, 902, 910
MboII	GAAGA	4 cut(s)	272, 365, 368, 534
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	3 cut(s)	378, 539, 707
MhlI	GDGCHC	1 cut(s)	1037
MluCI	AATT	7 cut(s)	120, 285, 348, 470, 937, 989, 1127
MlyI	GAGTC	3 cut(s)	14, 448, 875
MnlI	CCTC	7 cut(s)	156, 315, 430, 475, 504, 643, 1021
MseI	TTAA	3 cut(s)	86, 521, 594
MslI	CAYNNNNRTG	5 cut(s)	462, 605, 720, 813, 885
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	1 cut(s)	1074
MspR9I	CCNGG	2 cut(s)	494, 1075
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	1064
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	3 cut(s)	181, 497, 632
NciI	CCSGG	1 cut(s)	1075
NdeII	GATC	6 cut(s)	378, 539, 707, 830, 902, 910
NlaIII	CATG	4 cut(s)	146, 725, 752, 917
NlaIV	GGNNCC	2 cut(s)	380, 1035
NmeAIII	GCCGAG	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	2 cut(s)	725, 752
OliI	CACNNNNGTG	1 cut(s)	605
PagI	TCATGA	2 cut(s)	142, 913
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	1064
PfeI	GAWTC	4 cut(s)	344, 760, 794, 994
PkrI	GCNGC	3 cut(s)	169, 269, 660
PleI	GAGTC	3 cut(s)	13, 448, 874
PpsI	GAGTC	3 cut(s)	13, 448, 874
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	380, 1035
PspOMI	GGGCCC	1 cut(s)	1033
PspPI	GGNCC	2 cut(s)	1033, 1034
PsuI	RGATCY	3 cut(s)	378, 539, 707
RsaI	GTAC	3 cut(s)	152, 301, 334
RsaNI	GTAC	3 cut(s)	151, 300, 333
RseI	CAYNNNNRTG	5 cut(s)	462, 605, 720, 813, 885
SaqAI	TTAA	3 cut(s)	86, 521, 594
SatI	GCNGC	3 cut(s)	168, 268, 659
Sau3AI	GATC	6 cut(s)	378, 539, 707, 830, 902, 910
Sau96I	GGNCC	2 cut(s)	1033, 1034
SchI	GAGTC	3 cut(s)	14, 448, 875
ScrFI	CCNGG	2 cut(s)	494, 1075
SduI	GDGCHC	1 cut(s)	1037
SfaNI	GCATC	5 cut(s)	430, 688, 817, 889, 961
SmiMI	CAYNNNNRTG	5 cut(s)	462, 605, 720, 813, 885
SmlI	CTYRAG	2 cut(s)	927, 975
SmoI	CTYRAG	2 cut(s)	927, 975
SpeI	ACTAGT	2 cut(s)	296, 1117
Sse9I	AATT	7 cut(s)	120, 285, 348, 470, 937, 989, 1127
SsiI	CCGC	3 cut(s)	184, 268, 603
SspMI	CTAG	6 cut(s)	297, 383, 737, 819, 891, 1118
StyD4I	CCNGG	2 cut(s)	492, 1073
StyI	CCWWGG	1 cut(s)	382
TaqI	TCGA	2 cut(s)	486, 517
TasI	AATT	7 cut(s)	120, 285, 348, 470, 937, 989, 1127
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	4 cut(s)	344, 760, 794, 994
Tru1I	TTAA	3 cut(s)	86, 521, 594
Tru9I	TTAA	3 cut(s)	86, 521, 594
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	167, 658
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	8 cut(s)	108, 126, 131, 414, 777, 849, 930, 934
TspGWI	ACGGA	3 cut(s)	28, 424, 999
TspRI	CASTG	1 cut(s)	612
XapI	RAATTY	2 cut(s)	120, 285
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	2 cut(s)	725, 752
XmaJI	CCTAGG	1 cut(s)	382
XspI	CTAG	6 cut(s)	297, 383, 737, 819, 891, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.