Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Forward (+)

38628721 .. 38632241

Gene Structure 3521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002726

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTTGATGCTGAAAGATCTTATCATCAACATGCGCTTACTATTCTAGAGAAGCTACATTCTGAGATGATTCTGGAGAACCTACCACAAGAATTTTCATTAGAATCAGAGACGGTGCATCCAAATGCTAGTTCAAAGACATCCGATGATCATGAACAACTTACTGATGATGGCAATTTTTTCATTGCAAGAGCTATACACCCTTTTGATGCTCAAGCAGATGGAGAGTTGAATCTATCAATTGGTGATTATGTTGTGGTTCGTGAGGTGGGCCCTAATGGATGGTCTGAAGGGGAATGCAAGGGCAAGGCCGGGTGGTTTCCATCTGCATATATAGAGAGGCAGGAAAAGGCACCGGTGAGCAAATTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

125

Amino Acids

13.87

Weight (kDa)

4.72

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_2	PF07653	63 - 113	8.9e-08	Variant SH3 domain
SH3_1	PF00018	64 - 109	3.1e-10	SH3 domain
SH3_9	PF14604	65 - 113	3.5e-11	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	309
AgeI	ACCGGT	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	135, 232
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	2 cut(s)	55, 194
AluI	AGCT	2 cut(s)	55, 194
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	2 cut(s)	271, 309
ApaI	GGGCCC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	92
AsiGI	ACCGGT	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	271, 272
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	257, 370
BaeGI	GKGCMC	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	275
BccI	CCATC	4 cut(s)	164, 215, 276, 331
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	47, 129
BglII	AGATCT	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	271, 272
BmiI	GGNNCC	2 cut(s)	273, 354
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	2 cut(s)	127, 199
BpmI	CTGGAG	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	313
BsaWI	WCCGGW	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	118, 140, 287
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	54
BseSI	GKGCMC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	273, 311
BshNI	GGYRCC	1 cut(s)	352
BshTI	ACCGGT	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	312, 356
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	273, 311
Bsp120I	GGGCCC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	17, 148
BspANI	GGCC	2 cut(s)	273, 311
BspCNI	CTCAG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	273, 354
BspT107I	GGYRCC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	355
BssMI	GATC	2 cut(s)	17, 148
Bst4CI	ACNGT	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	118, 140, 287
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	20, 151
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	17, 148
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	273, 311
BtsCI	GGATG	3 cut(s)	118, 140, 287
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	271, 272
CspAI	ACCGGT	1 cut(s)	355
CviAII	CATG	2 cut(s)	32, 152
CviJI	RGCY	4 cut(s)	55, 194, 273, 311
CviKI_1	RGCY	4 cut(s)	55, 194, 273, 311
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	19, 150
DpnII	GATC	2 cut(s)	17, 148
Eco24I	GRGCYC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	2 cut(s)	35, 155
FaiI	YATR	7 cut(s)	33, 153, 197, 252, 331, 333, 335
FatI	CATG	2 cut(s)	31, 151
FbaI	TGATCA	1 cut(s)	148
FokI	GGATG	3 cut(s)	105, 127, 294
FriOI	GRGCYC	1 cut(s)	275
FspBI	CTAG	2 cut(s)	47, 129
GlaI	GCGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	273, 311
HapII	CCGG	2 cut(s)	312, 356
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	35, 155
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	3 cut(s)	70, 104, 232
HpaII	CCGG	2 cut(s)	312, 356
HphI	GGTGA	2 cut(s)	257, 370
Hpy188I	TCNGA	4 cut(s)	64, 109, 145, 289
Hpy188III	TCNNGA	4 cut(s)	47, 74, 152, 263
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	118, 188, 300, 329
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	35, 155
HspAI	GCGC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	17, 148
LpnPI	CCDG	4 cut(s)	59, 325, 329, 369
LweI	GCATC	2 cut(s)	127, 199
MaeI	CTAG	2 cut(s)	47, 129
MalI	GATC	2 cut(s)	19, 150
MboI	GATC	2 cut(s)	17, 148
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	4 cut(s)	92, 175, 240, 365
MnlI	CCTC	2 cut(s)	259, 333
MslI	CAYNNNNRTG	2 cut(s)	30, 123
MspI	CCGG	2 cut(s)	312, 356
MspR9I	CCNGG	1 cut(s)	313
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	302
NciI	CCSGG	1 cut(s)	313
NdeII	GATC	2 cut(s)	17, 148
NlaIII	CATG	2 cut(s)	35, 155
NlaIV	GGNNCC	2 cut(s)	273, 354
NspI	RCATGY	1 cut(s)	35
PagI	TCATGA	1 cut(s)	151
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	70, 104, 232
PinAI	ACCGGT	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	273, 354
PspOMI	GGGCCC	1 cut(s)	271
PspPI	GGNCC	2 cut(s)	271, 272
PsuI	RGATCY	1 cut(s)	17
RseI	CAYNNNNRTG	2 cut(s)	30, 123
Sau3AI	GATC	2 cut(s)	17, 148
Sau96I	GGNCC	2 cut(s)	271, 272
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	4 cut(s)	57, 84, 196, 270
SfaNI	GCATC	2 cut(s)	127, 199
SgrAI	CRCCGGYG	1 cut(s)	355
SmiMI	CAYNNNNRTG	2 cut(s)	30, 123
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	4 cut(s)	92, 175, 240, 365
SspMI	CTAG	2 cut(s)	47, 129
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	4 cut(s)	92, 175, 240, 365
TfiI	GAWTC	3 cut(s)	70, 104, 232
TspDTI	ATGAA	3 cut(s)	87, 168, 172
XapI	RAATTY	1 cut(s)	92
XbaI	TCTAGA	1 cut(s)	46
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	2 cut(s)	47, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.