RchiOBHm_Chr7g0214611

Src homology 3 domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004165
Physical Location & Seq
Reverse (-)
31999526 .. 32000198
673 bp
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UTR
Exon/CDS
Intron
PRQ19201

Sequence Viewer

Length: 267 bp
ATGCCACGTGGTGGTCCTGGACCACTGAATAATTTCTCCTCCCTATCAGTTGCATCAACTTTTATTAAAAGTCCACTTTCTGAAAGTATAGTTTTGTTAGCTATACACCCATTTGATGCTCAAGCAGATGGAGAGTTGAATCTATCAATTGATGATTATGTTGTGGTTCGTGAGATGGGCCCTAATGGATGGTCTGGAGGGGAATGCAAGGGCATGGCCGGGTGGTTTCCATCCGCGTATATTGAGAGGCAGGAAAAGCACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
SH3_9

Protein Analysis

88

Amino Acids

9.51

Weight (kDa)

4.89

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_9 PF14604 34 - 82 1.5e-11 Variant SH3 domain
SH3_1 PF00018 34 - 78 5.9e-08 SH3 domain
SH3_2 PF07653 42 - 82 4.2e-06 Variant SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 11
AccII CGCG 1 cut(s) 236
AciI CCGC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 216
AcvI CACGTG 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AoxI GGCC 2 cut(s) 178, 216
ApaI GGGCCC 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 32
AspS9I GGNCC 4 cut(s) 14, 20, 178, 179
AsuC2I CCSGG 1 cut(s) 220
AvaII GGWCC 2 cut(s) 14, 20
BaeGI GKGCMC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 182
BbrPI CACGTG 1 cut(s) 8
BccI CCATC 4 cut(s) 122, 169, 183, 238
BciT130I CCWGG 1 cut(s) 18
BcnI CCSGG 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 18, 220
Bme18I GGWCC 2 cut(s) 14, 20
BmgT120I GGNCC 4 cut(s) 14, 20, 178, 179
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 18, 220
BmsI GCATC 2 cut(s) 62, 106
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 194, 230
BseLI CCNNNNNNNGG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 2 cut(s) 180, 218
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 11
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 2 cut(s) 180, 218
Bsp120I GGGCCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 182
BspACI CCGC 1 cut(s) 234
BspANI GGCC 2 cut(s) 180, 218
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 8
BstF5I GGATG 2 cut(s) 194, 230
BstFNI CGCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 16, 218
BstSLI GKGCMC 1 cut(s) 182
BstUI CGCG 1 cut(s) 236
BsuRI GGCC 2 cut(s) 180, 218
BtsCI GGATG 2 cut(s) 194, 230
BtsIMutI CAGTG 1 cut(s) 23
Cfr13I GGNCC 4 cut(s) 14, 20, 178, 179
CviAII CATG 1 cut(s) 214
CviJI RGCY 3 cut(s) 101, 180, 218
CviKI_1 RGCY 3 cut(s) 101, 180, 218
DraIII CACNNNGTG 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 14, 20
Eco72I CACGTG 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 182
FaeI CATG 1 cut(s) 217
FaiI YATR 5 cut(s) 89, 104, 159, 215, 240
FatI CATG 1 cut(s) 213
FokI GGATG 2 cut(s) 201, 217
FriOI GRGCYC 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 2 cut(s) 180, 218
HapII CCGG 1 cut(s) 219
Hin1II CATG 1 cut(s) 217
HinfI GANTC 1 cut(s) 139
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 2 cut(s) 170, 195
Hpy8I GTNNAC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 53, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 1 cut(s) 217
LpnPI CCDG 5 cut(s) 3, 30, 180, 232, 236
LweI GCATC 2 cut(s) 62, 106
MaeII ACGT 1 cut(s) 7
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 2 cut(s) 31, 147
MnlI CCTC 3 cut(s) 49, 191, 240
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 66
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 2 cut(s) 18, 220
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 220
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 180
PctI GAATGC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 139
PflMI CCANNNNNTGG 1 cut(s) 11
PfoI TCCNGGA 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 16
PspCI CACGTG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 180
PspOMI GGGCCC 1 cut(s) 178
PspPI GGNCC 4 cut(s) 14, 20, 178, 179
SaqAI TTAA 1 cut(s) 66
Sau96I GGNCC 4 cut(s) 14, 20, 178, 179
ScrFI CCNGG 2 cut(s) 18, 220
SduI GDGCHC 1 cut(s) 182
SetI ASST 2 cut(s) 10, 103
SfaNI GCATC 2 cut(s) 62, 106
SinI GGWCC 2 cut(s) 14, 20
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 2 cut(s) 31, 147
SsiI CCGC 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 16, 218
TaiI ACGT 1 cut(s) 10
TasI AATT 2 cut(s) 31, 147
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 30
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 11
VpaK11BI GGWCC 2 cut(s) 14, 20
XmnI GAANNNNTTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.