Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Reverse (-)

2688964 .. 2692468

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1021700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGTCCATACGGAAGCAAGCCAGTAAGCTCAGGGAGCAAGTCGCAAAGCAACAGCAGGCTGTGTTGAAACGGTTGGGAAATTTAGGTAATGAAGCTGTTATGATTGATGAAGAGGAACTTATGTGTCACCAAAAACTTCAGGATTTGTATAATTCTACGAGGGCTACAAAGCATTTTCAGCGGAGTGTTGTTCGGGGGGTTGAGGCTTTTATTTCTACTAGCTCAAAACAAATGGAAATAGTGAGAAAGTTAGCTGAAAATTGCTGCAAATATGGAGCTGAAAATCAAAGCACTAGCACTCATCTAGCAAGGGGTTCTGAATACTTTGGCACTTCATATAATTCAATTGAAGATGAGAGAGAGGCTTTTCTTAAGGTCCTTGGTGAGCAGGTTGCTGAACCTTTACGGGCACAAATAGCAGGGGCTCCTTTGGAGGATGCTCGTCACTTGACTCATCGTTATGATAAATTGCGACAGGAGGTGGAAGCCCAGGTGGCTGATGTATTGAGGCGTCGATTGAAATTCTCTTCAGTATCTGTAGAGAGTTCTGTGAAGCTTCAAAATGCAGAAGCAAGATTGACAGAGCTTAAATCTTCTACAGTGGCACTTGGGAAAGAAGCAACTGCCGCAATGTTGTCAGTTGAGGATCAGCAACAACAGATGACTTTTCATAAGCTTCGTACTATGGTATTGTTACTAATTGTTTGTGAGGACTGCACATGGCTATTCTATTACATCTTGGTTGCCATTTATGGATATAAAGTTGATTGTTGTCTATATGAAAGGCTTATTAAAGTAGTTACTGTTCTGTTTGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

275

Amino Acids

31.22

Weight (kDa)

8.1

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AciI	CCGC	2 cut(s)	184, 630
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	2 cut(s)	82, 524
AcuI	CTGAAG	2 cut(s)	125, 516
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	1 cut(s)	685
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	70, 348, 353, 523, 563
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	8 cut(s)	31, 98, 225, 257, 281, 559, 589, 679
AluI	AGCT	8 cut(s)	31, 98, 225, 257, 281, 559, 589, 679
AlwI	GGATC	1 cut(s)	657
AlwNI	CAGNNNCTG	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	267
ApoI	RAATTY	2 cut(s)	82, 524
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	122, 398
AvaII	GGWCC	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	494
BfaI	CTAG	3 cut(s)	222, 297, 308
BfmI	CTRYAG	2 cut(s)	540, 600
BfrI	CTTAAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	2 cut(s)	268, 630
BlsI	GCNGC	2 cut(s)	269, 631
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	2 cut(s)	382, 492
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	382, 492
BseGI	GGATG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	254
BsgI	GTGCAG	1 cut(s)	703
Bsp1286I	GDGCHC	2 cut(s)	415, 430
Bsp143I	GATC	1 cut(s)	649
BspACI	CCGC	2 cut(s)	184, 630
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	657
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	382, 492
BssMI	GATC	1 cut(s)	649
BssNI	GRCGYC	1 cut(s)	514
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	3 cut(s)	75, 604, 808
Bst6I	CTCTTC	2 cut(s)	108, 535
BstACI	GRCGYC	1 cut(s)	514
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	21, 60
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 181, 419, 497, 629
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	2 cut(s)	540, 600
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	609
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	21, 60
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	379
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	684
CviAII	CATG	1 cut(s)	723
CviQI	GTAC	1 cut(s)	684
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
Eam1104I	CTCTTC	2 cut(s)	108, 535
EarI	CTCTTC	2 cut(s)	108, 535
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	125, 516
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	1 cut(s)	726
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	1 cut(s)	722
Fnu4HI	GCNGC	2 cut(s)	268, 630
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	2 cut(s)	268, 630
FspBI	CTAG	3 cut(s)	222, 297, 308
GluI	GCNGC	2 cut(s)	268, 630
HgaI	GACGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	1 cut(s)	726
HindIII	AAGCTT	2 cut(s)	557, 677
HinfI	GANTC	2 cut(s)	5, 454
HphI	GGTGA	2 cut(s)	122, 398
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	519
HpyCH4III	ACNGT	3 cut(s)	75, 604, 808
HpyCH4V	TGCA	3 cut(s)	270, 569, 720
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 181, 419, 497, 629
HpyF3I	CTNAG	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	1 cut(s)	726
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	3 cut(s)	37, 278, 433
LpnPI	CCDG	9 cut(s)	19, 37, 44, 128, 377, 408, 464, 479, 506
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	3 cut(s)	222, 297, 308
MaeIII	GTNAC	4 cut(s)	128, 446, 696, 802
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MboII	GAAGA	4 cut(s)	125, 365, 522, 588
MfeI	CAATTG	1 cut(s)	348
MhlI	GDGCHC	2 cut(s)	415, 430
MluCI	AATT	8 cut(s)	82, 154, 262, 343, 348, 470, 524, 702
MlyI	GAGTC	2 cut(s)	14, 448
MnlI	CCTC	9 cut(s)	109, 156, 199, 358, 430, 475, 504, 640, 706
MseI	TTAA	3 cut(s)	375, 591, 795
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	184
MspCI	CTTAAG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	5 cut(s)	37, 181, 419, 497, 629
NdeII	GATC	1 cut(s)	649
NlaIII	CATG	1 cut(s)	726
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	2 cut(s)	128, 446
PkrI	GCNGC	2 cut(s)	269, 631
PleI	GAGTC	2 cut(s)	13, 448
PpsI	GAGTC	2 cut(s)	13, 448
PpuMI	RGGWCCY	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	379
PspPPI	RGGWCCY	1 cut(s)	379
PsrI	GAACNNNNNNTAC	2 cut(s)	792, 824
PstNI	CAGNNNCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	375, 591, 795
SatI	GCNGC	2 cut(s)	268, 630
Sau3AI	GATC	1 cut(s)	649
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	2 cut(s)	14, 448
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	2 cut(s)	415, 430
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	2 cut(s)	540, 600
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	8 cut(s)	82, 154, 262, 343, 348, 470, 524, 702
SsiI	CCGC	2 cut(s)	184, 630
SspMI	CTAG	3 cut(s)	222, 297, 308
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	75, 604, 808
TaqI	TCGA	1 cut(s)	517
TasI	AATT	8 cut(s)	82, 154, 262, 343, 348, 470, 524, 702
TauI	GCSGC	1 cut(s)	632
Tru1I	TTAA	3 cut(s)	375, 591, 795
Tru9I	TTAA	3 cut(s)	375, 591, 795
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	2 cut(s)	128, 446
TseI	GCWGC	1 cut(s)	267
Tsp45I	GTSAC	2 cut(s)	128, 446
TspDTI	ATGAA	5 cut(s)	108, 126, 327, 662, 798
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	609
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	2 cut(s)	82, 524
XspI	CTAG	3 cut(s)	222, 297, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.