Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Reverse (-)

31638222 .. 31645370

Gene Structure 7149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG302800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGTCCATACGGAAGCAAGCCTGCAAGCTCAGGGAGCAAGTCGCTAAGCAACAGCAGGCTGTATTGAAACGATTGGGAAGTTTAAGTGATGAAGCTGTTATGGTTGATGAAGCTGAAATTCTGTGCCATCAACAACTTCATGATTTATACACTTCCACGAGGGCAGCGAAGCATTTTCAGCGGAGTATTGTTCGGGGAGTTGAAGCTTTTATTTCCATCAGCTTAAAACAAAAGGAAATAGTAAGAAAGTTGGCTGAAGATTGCTGCAAATATGGAGCTGAAAATCAAAACACTAGTACCCCTGTAGTTAGAGCTTCAACTTACTTTGGTACTTCACATGATTCAATTGAAGAAGAGAGAGAGACTTTCCTTAGGATCCTAGGTGAGCAGGTTTATGAACCTTTACGGGCACAACTAACTGGGTCTCCTTTGGAGGATGCTCGTCACTTGACTCATCGTTATGATAAACTGCGTCAGGAGGTCGAAGCCCAGGTGGCTGAAGTATTGAGGCGTCGATTGAAATCCAAGGCTTCTGGATCTTCTGAGAGTTCCTTGAAACTTCAAAATACAGAAGCAAGATTGACAGAGCTTAAATCCACTGCAGTGGCACTTGGCCGAGAAGCGACTTCTGCAATGTTGTCAGTTGAGGCTCAGCAGCAACAGATGACTTTCCAGAAGCTTCTTACTATGGTTGATGCTGAAAGATCTTATCATCAACATGCGCTTGCAATACTAGAGAAGCTACATTCTGAGGTTGTATTATGGAGTAGGGCTCTGCTTGTTTTGTCATTGTGTACTGTTTTCTATTATCTTGTCTGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

275

Amino Acids

31.22

Weight (kDa)

8.17

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	3 cut(s)	373, 386, 547
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	2 cut(s)	279, 522
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	3 cut(s)	301, 334, 799
AgsI	TTSAA	8 cut(s)	70, 206, 321, 348, 353, 523, 559, 566
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	492
AleI	CACNNNNGTG	1 cut(s)	605
Alw26I	GTCTC	2 cut(s)	359, 432
AlwI	GGATC	3 cut(s)	373, 386, 547
AoxI	GGCC	1 cut(s)	616
ApeKI	GCWGC	3 cut(s)	167, 267, 658
ApoI	RAATTY	1 cut(s)	120
AspA2I	CCTAGG	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	727
AsuHPI	GGTGA	1 cut(s)	398
AvrII	CCTAGG	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	415
BaeI	ACNNNNGTAYC	2 cut(s)	283, 316
BamHI	GGATCC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	778
BauI	CACGAG	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	179, 254, 670
BccI	CCATC	2 cut(s)	138, 227
BciT130I	CCWGG	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	359, 432
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	3 cut(s)	297, 383, 737
BfmI	CTRYAG	2 cut(s)	306, 603
BfuAI	ACCTGC	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	497
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	3 cut(s)	168, 268, 659
BlnI	CCTAGG	1 cut(s)	382
BlpI	GCTNAGC	2 cut(s)	48, 654
BlsI	GCNGC	3 cut(s)	169, 269, 660
Bme1390I	CCNGG	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	494
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	2 cut(s)	430, 688
BmuI	ACTGGG	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	760, 792
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu1102I	GCTNAGC	2 cut(s)	48, 654
BsaBI	GATNNNNATC	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	382, 492, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bse1I	ACTGG	1 cut(s)	427
Bse21I	CCTNAGG	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	3 cut(s)	382, 492, 528
BseGI	GGATG	1 cut(s)	445
BseJI	GATNNNNATC	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	4 cut(s)	46, 537, 668, 744
BseNI	ACTGG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	3 cut(s)	179, 254, 670
BsgI	GTGCAG	1 cut(s)	805
BshFI	GGCC	1 cut(s)	618
BsmAI	GTCTC	2 cut(s)	359, 432
BsnI	GGCC	1 cut(s)	618
Bso31I	GGTCTC	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	415, 778
Bsp143I	GATC	3 cut(s)	378, 539, 707
Bsp1720I	GCTNAGC	2 cut(s)	48, 654
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	618
BspCNI	CTCAG	4 cut(s)	45, 538, 667, 745
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	380
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	3 cut(s)	373, 386, 547
BspTNI	GGTCTC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	3 cut(s)	382, 492, 528
BssMI	GATC	3 cut(s)	378, 539, 707
BssNI	GRCGYC	1 cut(s)	514
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	2 cut(s)	382, 528
Bst2BI	CACGAG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	802
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	514
BstC8I	GCNNGC	5 cut(s)	21, 25, 29, 60, 729
BstDEI	CTNAG	6 cut(s)	32, 48, 374, 546, 654, 753
BstF5I	GGATG	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	3 cut(s)	381, 542, 710
BstMAI	GTCTC	2 cut(s)	359, 432
BstMBI	GATC	3 cut(s)	378, 539, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 181, 497, 632
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	2 cut(s)	306, 603
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	3 cut(s)	179, 254, 670
BstX2I	RGATCY	3 cut(s)	378, 539, 707
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	3 cut(s)	378, 539, 707
Bsu36I	CCTNAGG	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	445
BtsI	GCAGTG	2 cut(s)	600, 612
BtsIMutI	CAGTG	2 cut(s)	600, 612
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	5 cut(s)	21, 25, 29, 60, 729
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	727
CseI	GACGC	2 cut(s)	464, 503
Csp6I	GTAC	3 cut(s)	300, 333, 798
CviAII	CATG	4 cut(s)	143, 341, 722, 825
CviQI	GTAC	3 cut(s)	300, 333, 798
DdeI	CTNAG	6 cut(s)	32, 48, 374, 546, 654, 753
DpnI	GATC	3 cut(s)	380, 541, 709
DpnII	GATC	3 cut(s)	378, 539, 707
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	382, 528
Eco24I	GRGCYC	1 cut(s)	778
Eco31I	GGTCTC	1 cut(s)	432
Eco57I	CTGAAG	2 cut(s)	279, 522
Eco81I	CCTNAGG	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	382, 528
EcoT38I	GRGCYC	1 cut(s)	778
ErhI	CCWWGG	2 cut(s)	382, 528
FaeI	CATG	4 cut(s)	146, 344, 725, 828
FatI	CATG	4 cut(s)	142, 340, 721, 824
Fnu4HI	GCNGC	3 cut(s)	168, 268, 659
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	778
Fsp4HI	GCNGC	3 cut(s)	168, 268, 659
FspBI	CTAG	3 cut(s)	297, 383, 737
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	3 cut(s)	168, 268, 659
HaeIII	GGCC	1 cut(s)	618
HgaI	GACGC	2 cut(s)	464, 503
HhaI	GCGC	1 cut(s)	727
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	4 cut(s)	146, 344, 725, 828
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HindIII	AAGCTT	2 cut(s)	207, 680
HinfI	GANTC	3 cut(s)	5, 344, 454
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	798
Hpy188I	TCNGA	2 cut(s)	547, 754
Hpy188III	TCNNGA	4 cut(s)	143, 479, 537, 676
Hpy8I	GTNNAC	1 cut(s)	798
Hpy99I	CGWCG	1 cut(s)	519
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4V	TGCA	6 cut(s)	27, 270, 605, 635, 731, 822
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 181, 497, 632
HpyF3I	CTNAG	6 cut(s)	32, 48, 374, 546, 654, 753
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	4 cut(s)	146, 344, 725, 828
HspAI	GCGC	1 cut(s)	725
Kzo9I	GATC	3 cut(s)	378, 539, 707
LmnI	GCTCC	2 cut(s)	37, 278
Lsp1109I	GCAGC	3 cut(s)	179, 254, 670
LweI	GCATC	2 cut(s)	430, 688
MaeI	CTAG	3 cut(s)	297, 383, 737
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	380, 541, 709
MboI	GATC	3 cut(s)	378, 539, 707
MboII	GAAGA	4 cut(s)	272, 365, 368, 534
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	3 cut(s)	378, 539, 707
MhlI	GDGCHC	2 cut(s)	415, 778
MluCI	AATT	2 cut(s)	120, 348
MlyI	GAGTC	2 cut(s)	14, 448
MnlI	CCTC	6 cut(s)	156, 430, 475, 504, 643, 748
MseI	TTAA	3 cut(s)	86, 227, 594
MslI	CAYNNNNRTG	3 cut(s)	462, 605, 720
MspA1I	CMGCKG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	37, 181, 497, 632
NdeII	GATC	3 cut(s)	378, 539, 707
NlaIII	CATG	4 cut(s)	146, 344, 725, 828
NlaIV	GGNNCC	1 cut(s)	380
NmeAIII	GCCGAG	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	725
OliI	CACNNNNGTG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	3 cut(s)	169, 269, 660
PleI	GAGTC	2 cut(s)	13, 448
PpsI	GAGTC	2 cut(s)	13, 448
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	3 cut(s)	378, 539, 707
RsaI	GTAC	3 cut(s)	301, 334, 799
RsaNI	GTAC	3 cut(s)	300, 333, 798
RseI	CAYNNNNRTG	3 cut(s)	462, 605, 720
SaqAI	TTAA	3 cut(s)	86, 227, 594
SatI	GCNGC	3 cut(s)	168, 268, 659
Sau3AI	GATC	3 cut(s)	378, 539, 707
SchI	GAGTC	2 cut(s)	14, 448
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	2 cut(s)	415, 778
SfaNI	GCATC	2 cut(s)	430, 688
SfcI	CTRYAG	2 cut(s)	306, 603
SmiMI	CAYNNNNRTG	3 cut(s)	462, 605, 720
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	2 cut(s)	120, 348
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	3 cut(s)	297, 383, 737
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	2 cut(s)	382, 528
TaaI	ACNGT	1 cut(s)	802
TaqI	TCGA	2 cut(s)	486, 517
TasI	AATT	2 cut(s)	120, 348
TatI	WGTACW	1 cut(s)	797
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	86, 227, 594
Tru9I	TTAA	3 cut(s)	86, 227, 594
TscAI	CASTG	2 cut(s)	607, 612
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	3 cut(s)	167, 267, 658
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	108, 126, 131, 414
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	607, 612
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	725
XmaJI	CCTAGG	1 cut(s)	382
XspI	CTAG	3 cut(s)	297, 383, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.