Rmu_sc0003490.1_g000034

Src homology 3 domains

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003490.1
Physical Location & Seq
Reverse (-)
107575 .. 114771
7197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003490.1_g000034.1.cds

Sequence Viewer

Length: 1278 bp
atggagtccatacggaagcaagcctgcaagctcagggagcaagtcgctaagcaacagcaggctgtattgaaacgattgggaagtttaagtaatgaatctgttatggttgatgaagctgaaattctgtgccatcaacaacttcatgatttatacacttctacgagagcagcgaagcattttcagcggagtattgttcggggagttgaagcttttatttccatcagctcaaaacaaatggaaatagtaagaaagttggctgaagattgctgcaaatatggagctgaaaatcaaaacactagtacccctctagttagagcttcaacttactttggtacttcacatgattcaattgaagaagagagagagactttccttaggatcctaggtgagcaggtttatgaacctttacgggcacaactaactgggtctcctttggaggatgctcgtcacttgactcatcgttatgataaactgcgtcaggaggtcgaagcccaggtggctgaagtattgaggcgtcgattgaaatccaaggcttctggatcttctgagagttccttgaaacttcaaaatacagaagcaagattgacagagcttaaatccactgcagtggcacttggccgagaagcgacttctgcaatgttgtcagttgaggctcagcagcaacagatgactttccagaagcttcttactatggttgatgctgaaagatcttatcatcaacatgcgcttgctattctagagaagctacattctgagatgattctggagaagctaccacaagaattttcattagaatcagagacagtgcatccaaatgctagttcaaagagatccgatgatcatgaacaacttactcaagatggcaattttttcattgcaagagctatacacccttttgatgctcaagcagatggagagttgaatctatcaattgatgattatgttgtggttcgtgaggtgggccctaatggatggtctgaaggggaatgcaagggcaaggccgggtggtttccatccgcatatatagagaggcacgaaaaagcaccagtgagcaaattattcccagaaaagcaagggcccaaaggccactgtcgaaaccctacgtccccatcacccaggttgccctggtctgatccttcagggaggcaacccccactcatcaccgctccggcggccgaccgcggctctccaccatcagaccaatctggaaaagacctcgccttgggcctaacctggaagacaaccgcacctgttgtcgaagggaacccgaaagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

47.42

Weight (kDa)

6.42

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AccBSI CCGCTC 1 cut(s) 1166
AccII CGCG 1 cut(s) 1182
AciI CCGC 7 cut(s) 184, 1017, 1164, 1172, 1180, 1182, 1245
AclWI GGATC 5 cut(s) 373, 386, 547, 825, 1127
AcoI YGGCCR 2 cut(s) 616, 1173
AcsI RAATTY 2 cut(s) 120, 782
AcuI CTGAAG 4 cut(s) 279, 522, 999, 1122
AcyI GRCGYC 1 cut(s) 514
AfaI GTAC 2 cut(s) 301, 334
AfiI CCNNNNNNNGG 1 cut(s) 1222
AhlI ACTAGT 1 cut(s) 296
AjnI CCWGG 4 cut(s) 492, 1115, 1124, 1232
AjuI GAANNNNNNNTTGG 2 cut(s) 805, 837
AleI CACNNNNGTG 1 cut(s) 605
Alw26I GTCTC 3 cut(s) 359, 432, 794
AlwI GGATC 5 cut(s) 373, 386, 547, 825, 1127
AoxI GGCC 7 cut(s) 616, 961, 999, 1076, 1084, 1173, 1225
ApaI GGGCCC 2 cut(s) 965, 1080
ApeKI GCWGC 3 cut(s) 167, 267, 658
ApoI RAATTY 2 cut(s) 120, 782
AspA2I CCTAGG 1 cut(s) 382
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 5 cut(s) 961, 962, 1076, 1077, 1225
AsuC2I CCSGG 1 cut(s) 1003
AsuHPI GGTGA 3 cut(s) 398, 1104, 1153
AvrII CCTAGG 1 cut(s) 382
AxyI CCTNAGG 1 cut(s) 374
BaeGI GKGCMC 3 cut(s) 415, 965, 1080
BaeI ACNNNNGTAYC 2 cut(s) 283, 316
BamHI GGATCC 1 cut(s) 378
BanII GRGCYC 2 cut(s) 965, 1080
BbsI GAAGAC 1 cut(s) 1244
BbvI GCAGC 3 cut(s) 179, 254, 670
BccI CCATC 8 cut(s) 138, 227, 854, 905, 966, 1021, 1117, 1201
BciT130I CCWGG 4 cut(s) 494, 1117, 1126, 1234
BclI TGATCA 1 cut(s) 838
BcnI CCSGG 1 cut(s) 1003
BcoDI GTCTC 3 cut(s) 359, 432, 794
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 5 cut(s) 297, 308, 383, 737, 819
BfmI CTRYAG 1 cut(s) 603
BfuAI ACCTGC 1 cut(s) 382
BglI GCCNNNNNGGC 1 cut(s) 497
BglII AGATCT 1 cut(s) 707
BisI GCNGC 5 cut(s) 168, 268, 659, 1173, 1183
BlnI CCTAGG 1 cut(s) 382
BlpI GCTNAGC 2 cut(s) 48, 654
BlsI GCNGC 5 cut(s) 169, 269, 660, 1174, 1184
Bme1390I CCNGG 5 cut(s) 494, 1003, 1117, 1126, 1234
BmgT120I GGNCC 5 cut(s) 961, 962, 1076, 1077, 1225
BmiI GGNNCC 4 cut(s) 380, 963, 1078, 1265
BmrFI CCNGG 5 cut(s) 494, 1003, 1117, 1126, 1234
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 4 cut(s) 430, 688, 817, 889
BmuI ACTGGG 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 1244
BpmI CTGGAG 1 cut(s) 785
Bpu10I CCTNAGC 1 cut(s) 32
Bpu1102I GCTNAGC 2 cut(s) 48, 654
BpuEI CTTGAG 2 cut(s) 840, 888
BpuMI CCSGG 1 cut(s) 1003
BsaBI GATNNNNATC 1 cut(s) 523
BsaHI GRCGYC 1 cut(s) 514
BsaI GGTCTC 1 cut(s) 432
BsaJI CCNNGG 7 cut(s) 382, 492, 528, 1115, 1124, 1180, 1221
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 1222
Bse1I ACTGG 2 cut(s) 427, 1046
Bse21I CCTNAGG 1 cut(s) 374
Bse3DI GCAATG 2 cut(s) 642, 873
Bse8I GATNNNNATC 1 cut(s) 523
BseBI CCWGG 4 cut(s) 494, 1117, 1126, 1234
BseDI CCNNGG 7 cut(s) 382, 492, 528, 1115, 1124, 1180, 1221
BseGI GGATG 4 cut(s) 445, 808, 977, 1013
BseJI GATNNNNATC 1 cut(s) 523
BseLI CCNNNNNNNGG 1 cut(s) 1222
BseMI GCAATG 2 cut(s) 642, 873
BseMII CTCAG 4 cut(s) 46, 537, 668, 744
BseNI ACTGG 2 cut(s) 427, 1046
BseSI GKGCMC 3 cut(s) 415, 965, 1080
BseX3I CGGCCG 1 cut(s) 1173
BseXI GCAGC 3 cut(s) 179, 254, 670
Bsh1236I CGCG 1 cut(s) 1182
Bsh1285I CGRYCG 2 cut(s) 1176, 1180
BshFI GGCC 7 cut(s) 618, 963, 1001, 1078, 1086, 1175, 1227
BsiEI CGRYCG 2 cut(s) 1176, 1180
BsiSI CCGG 2 cut(s) 1002, 1169
BslFI GGGAC 1 cut(s) 1090
BslI CCNNNNNNNGG 1 cut(s) 1222
BsmAI GTCTC 3 cut(s) 359, 432, 794
BsmFI GGGAC 1 cut(s) 1090
BsmI GAATGC 1 cut(s) 992
BsnI GGCC 7 cut(s) 618, 963, 1001, 1078, 1086, 1175, 1227
Bso31I GGTCTC 1 cut(s) 432
Bsp120I GGGCCC 2 cut(s) 961, 1076
Bsp1286I GDGCHC 3 cut(s) 415, 965, 1080
Bsp143I GATC 6 cut(s) 378, 539, 707, 830, 838, 1132
Bsp1720I GCTNAGC 2 cut(s) 48, 654
BspACI CCGC 7 cut(s) 184, 1017, 1164, 1172, 1180, 1182, 1245
BspANI GGCC 7 cut(s) 618, 963, 1001, 1078, 1086, 1175, 1227
BspCNI CTCAG 4 cut(s) 45, 538, 667, 745
BspFNI CGCG 1 cut(s) 1182
BspHI TCATGA 2 cut(s) 142, 841
BspLI GGNNCC 4 cut(s) 380, 963, 1078, 1265
BspMAI CTGCAG 1 cut(s) 607
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 5 cut(s) 373, 386, 547, 825, 1127
BspTNI GGTCTC 1 cut(s) 432
BsrBI CCGCTC 1 cut(s) 1166
BsrDI GCAATG 2 cut(s) 642, 873
BsrI ACTGG 2 cut(s) 427, 1046
BssECI CCNNGG 7 cut(s) 382, 492, 528, 1115, 1124, 1180, 1221
BssMI GATC 6 cut(s) 378, 539, 707, 830, 838, 1132
BssNI GRCGYC 1 cut(s) 514
BssT1I CCWWGG 3 cut(s) 382, 528, 1221
Bst2UI CCWGG 4 cut(s) 494, 1117, 1126, 1234
Bst4CI ACNGT 2 cut(s) 805, 1091
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 514
BstC8I GCNNGC 5 cut(s) 21, 25, 29, 60, 729
BstDEI CTNAG 6 cut(s) 32, 48, 374, 546, 654, 753
BstDSI CCRYGG 1 cut(s) 1180
BstF5I GGATG 4 cut(s) 445, 808, 977, 1013
BstFNI CGCG 1 cut(s) 1182
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 6 cut(s) 381, 542, 710, 833, 841, 1135
BstMAI GTCTC 3 cut(s) 359, 432, 794
BstMBI GATC 6 cut(s) 378, 539, 707, 830, 838, 1132
BstMCI CGRYCG 2 cut(s) 1176, 1180
BstMWI GCNNNNNNNGC 5 cut(s) 37, 181, 497, 632, 1172
BstNI CCWGG 4 cut(s) 494, 1117, 1126, 1234
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 5 cut(s) 492, 1001, 1115, 1124, 1232
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 3 cut(s) 415, 965, 1080
BstUI CGCG 1 cut(s) 1182
BstV1I GCAGC 3 cut(s) 179, 254, 670
BstV2I GAAGAC 1 cut(s) 1244
BstX2I RGATCY 4 cut(s) 378, 539, 707, 830
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 4 cut(s) 378, 539, 707, 830
BstZI CGGCCG 1 cut(s) 1173
Bsu36I CCTNAGG 1 cut(s) 374
BsuRI GGCC 7 cut(s) 618, 963, 1001, 1078, 1086, 1175, 1227
BtgI CCRYGG 1 cut(s) 1180
BtsCI GGATG 4 cut(s) 445, 808, 977, 1013
BtsI GCAGTG 2 cut(s) 600, 612
BtsIMutI CAGTG 5 cut(s) 600, 612, 810, 1053, 1087
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 5 cut(s) 21, 25, 29, 60, 729
CciI TCATGA 2 cut(s) 142, 841
CfoI GCGC 1 cut(s) 727
Cfr13I GGNCC 5 cut(s) 961, 962, 1076, 1077, 1225
Cfr42I CCGCGG 1 cut(s) 1183
CseI GACGC 2 cut(s) 464, 503
Csp6I GTAC 2 cut(s) 300, 333
CviAII CATG 4 cut(s) 143, 341, 722, 842
CviQI GTAC 2 cut(s) 300, 333
DdeI CTNAG 6 cut(s) 32, 48, 374, 546, 654, 753
DpnI GATC 6 cut(s) 380, 541, 709, 832, 840, 1134
DpnII GATC 6 cut(s) 378, 539, 707, 830, 838, 1132
EaeI YGGCCR 2 cut(s) 616, 1173
EagI CGGCCG 1 cut(s) 1173
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EclXI CGGCCG 1 cut(s) 1173
Eco130I CCWWGG 3 cut(s) 382, 528, 1221
Eco24I GRGCYC 2 cut(s) 965, 1080
Eco31I GGTCTC 1 cut(s) 432
Eco52I CGGCCG 1 cut(s) 1173
Eco57I CTGAAG 4 cut(s) 279, 522, 999, 1122
Eco81I CCTNAGG 1 cut(s) 374
EcoO109I RGGNCCY 2 cut(s) 962, 1076
EcoRII CCWGG 4 cut(s) 492, 1115, 1124, 1232
EcoT14I CCWWGG 3 cut(s) 382, 528, 1221
EcoT38I GRGCYC 2 cut(s) 965, 1080
ErhI CCWWGG 3 cut(s) 382, 528, 1221
FaeI CATG 4 cut(s) 146, 344, 725, 845
FaqI GGGAC 1 cut(s) 1090
FatI CATG 4 cut(s) 142, 340, 721, 841
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 5 cut(s) 168, 268, 659, 1173, 1183
FokI GGATG 4 cut(s) 452, 795, 984, 1000
FriOI GRGCYC 2 cut(s) 965, 1080
Fsp4HI GCNGC 5 cut(s) 168, 268, 659, 1173, 1183
FspBI CTAG 5 cut(s) 297, 308, 383, 737, 819
GlaI GCGC 1 cut(s) 726
GluI GCNGC 5 cut(s) 168, 268, 659, 1173, 1183
GsuI CTGGAG 1 cut(s) 785
HaeIII GGCC 7 cut(s) 618, 963, 1001, 1078, 1086, 1175, 1227
HapII CCGG 2 cut(s) 1002, 1169
HgaI GACGC 2 cut(s) 464, 503
HhaI GCGC 1 cut(s) 727
Hin1I GRCGYC 1 cut(s) 514
Hin1II CATG 4 cut(s) 146, 344, 725, 845
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HindIII AAGCTT 2 cut(s) 207, 680
HinfI GANTC 7 cut(s) 5, 95, 344, 454, 760, 794, 922
HpaII CCGG 2 cut(s) 1002, 1169
HphI GGTGA 3 cut(s) 398, 1104, 1153
Hpy188I TCNGA 7 cut(s) 547, 754, 799, 835, 979, 1132, 1198
Hpy99I CGWCG 1 cut(s) 519
HpyAV CCTTC 3 cut(s) 974, 1146, 1253
HpyCH4III ACNGT 2 cut(s) 805, 1091
HpyCH4IV ACGT 1 cut(s) 1103
HpyCH4V TGCA 7 cut(s) 27, 270, 605, 635, 808, 878, 990
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 181, 497, 632, 1172
HpyF3I CTNAG 6 cut(s) 32, 48, 374, 546, 654, 753
HpySE526I ACGT 1 cut(s) 1103
Hsp92I GRCGYC 1 cut(s) 514
Hsp92II CATG 4 cut(s) 146, 344, 725, 845
HspAI GCGC 1 cut(s) 725
Ksp22I TGATCA 1 cut(s) 838
KspI CCGCGG 1 cut(s) 1183
Kzo9I GATC 6 cut(s) 378, 539, 707, 830, 838, 1132
LmnI GCTCC 3 cut(s) 37, 278, 1171
Lsp1109I GCAGC 3 cut(s) 179, 254, 670
LweI GCATC 4 cut(s) 430, 688, 817, 889
MaeI CTAG 5 cut(s) 297, 308, 383, 737, 819
MaeII ACGT 1 cut(s) 1103
MaeIII GTNAC 1 cut(s) 446
MalI GATC 6 cut(s) 380, 541, 709, 832, 840, 1134
MbiI CCGCTC 1 cut(s) 1166
MboI GATC 6 cut(s) 378, 539, 707, 830, 838, 1132
MboII GAAGA 5 cut(s) 272, 365, 368, 534, 1249
MfeI CAATTG 2 cut(s) 348, 930
MflI RGATCY 4 cut(s) 378, 539, 707, 830
MhlI GDGCHC 3 cut(s) 415, 965, 1080
MluCI AATT 6 cut(s) 120, 348, 782, 865, 930, 1055
MlyI GAGTC 2 cut(s) 14, 448
MnlI CCTC 9 cut(s) 315, 430, 475, 504, 643, 949, 1023, 1137, 1226
MseI TTAA 2 cut(s) 86, 594
MslI CAYNNNNRTG 4 cut(s) 462, 605, 720, 813
MspA1I CMGCKG 2 cut(s) 184, 1182
MspI CCGG 2 cut(s) 1002, 1169
MspR9I CCNGG 5 cut(s) 494, 1003, 1117, 1126, 1234
MunI CAATTG 2 cut(s) 348, 930
Mva1269I GAATGC 1 cut(s) 992
MvaI CCWGG 4 cut(s) 494, 1117, 1126, 1234
MvnI CGCG 1 cut(s) 1182
MwoI GCNNNNNNNGC 5 cut(s) 37, 181, 497, 632, 1172
NciI CCSGG 1 cut(s) 1003
NdeII GATC 6 cut(s) 378, 539, 707, 830, 838, 1132
NlaIII CATG 4 cut(s) 146, 344, 725, 845
NlaIV GGNNCC 4 cut(s) 380, 963, 1078, 1265
NmeAIII GCCGAG 1 cut(s) 644
NmuCI GTSAC 1 cut(s) 446
NspI RCATGY 1 cut(s) 725
OliI CACNNNNGTG 1 cut(s) 605
PagI TCATGA 2 cut(s) 142, 841
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PctI GAATGC 1 cut(s) 992
PfeI GAWTC 5 cut(s) 95, 344, 760, 794, 922
PkrI GCNGC 5 cut(s) 169, 269, 660, 1174, 1184
PleI GAGTC 2 cut(s) 13, 448
PpsI GAGTC 2 cut(s) 13, 448
Psp6I CCWGG 4 cut(s) 492, 1115, 1124, 1232
PspGI CCWGG 4 cut(s) 492, 1115, 1124, 1232
PspN4I GGNNCC 4 cut(s) 380, 963, 1078, 1265
PspOMI GGGCCC 2 cut(s) 961, 1076
PspPI GGNCC 5 cut(s) 961, 962, 1076, 1077, 1225
PstI CTGCAG 1 cut(s) 607
PsuI RGATCY 4 cut(s) 378, 539, 707, 830
RsaI GTAC 2 cut(s) 301, 334
RsaNI GTAC 2 cut(s) 300, 333
RseI CAYNNNNRTG 4 cut(s) 462, 605, 720, 813
SacII CCGCGG 1 cut(s) 1183
SaqAI TTAA 2 cut(s) 86, 594
SatI GCNGC 5 cut(s) 168, 268, 659, 1173, 1183
Sau3AI GATC 6 cut(s) 378, 539, 707, 830, 838, 1132
Sau96I GGNCC 5 cut(s) 961, 962, 1076, 1077, 1225
SchI GAGTC 2 cut(s) 14, 448
ScrFI CCNGG 5 cut(s) 494, 1003, 1117, 1126, 1234
SduI GDGCHC 3 cut(s) 415, 965, 1080
SfaNI GCATC 4 cut(s) 430, 688, 817, 889
SfcI CTRYAG 1 cut(s) 603
Sfr303I CCGCGG 1 cut(s) 1183
SgrBI CCGCGG 1 cut(s) 1183
SmiMI CAYNNNNRTG 4 cut(s) 462, 605, 720, 813
SmlI CTYRAG 2 cut(s) 855, 903
SmoI CTYRAG 2 cut(s) 855, 903
SpeI ACTAGT 1 cut(s) 296
Sse9I AATT 6 cut(s) 120, 348, 782, 865, 930, 1055
SsiI CCGC 7 cut(s) 184, 1017, 1164, 1172, 1180, 1182, 1245
SspMI CTAG 5 cut(s) 297, 308, 383, 737, 819
StyD4I CCNGG 5 cut(s) 492, 1001, 1115, 1124, 1232
StyI CCWWGG 3 cut(s) 382, 528, 1221
TaaI ACNGT 2 cut(s) 805, 1091
TaiI ACGT 1 cut(s) 1106
TaqI TCGA 4 cut(s) 486, 517, 1093, 1257
TasI AATT 6 cut(s) 120, 348, 782, 865, 930, 1055
TauI GCSGC 2 cut(s) 1175, 1185
TfiI GAWTC 5 cut(s) 95, 344, 760, 794, 922
Tru1I TTAA 2 cut(s) 86, 594
Tru9I TTAA 2 cut(s) 86, 594
TscAI CASTG 5 cut(s) 607, 612, 810, 1053, 1094
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 3 cut(s) 167, 267, 658
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 7 cut(s) 108, 126, 131, 414, 777, 858, 862
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 5 cut(s) 607, 612, 810, 1053, 1094
XapI RAATTY 2 cut(s) 120, 782
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 1 cut(s) 725
XmaJI CCTAGG 1 cut(s) 382
XspI CTAG 5 cut(s) 297, 308, 383, 737, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.