Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Reverse (-)

29649573 .. 29656028

Gene Structure 6456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G024180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGTCCATACGGAAGCAAGCCTGCAAGCTCAGGGAGCAAGTCGCTAAGCAACAGCAGGCTGTATTGAAACGATTGGGAAGTTTAAGTAATGAAGCTGTTATGGTTGATGAAGCTGAAATTCTGTGCCATCAACAACTTCATGATTTATACACTTCTACGAGAGCAGCGAAGCATTTTCAGCGGAGTATTGTTCGGGGAGTTGAAGCTTTTATTTCCATCAGCTTAAAACAAAGGGAAATAGTAAGAAAGTTGGCTGAAGATTGCTGCAAATATGGAGCTGAAAATCAAAACACTAGTACCCCTCTAGTTAGAGCTTCAACTTACTTTGGTACTTCACATGATTCAATTGAAGAAGAGAGAGAGACTTTCCTTAGGATCCTAGGTGAGCAGGTTTATGAACCTTTACGGGCACAACTAACTGGGTCTCCTTTGGAGGATGCTCGTCACTTGACTCATCGTTATGATAAACTGCGTCAGGAGGTCGAAGCCCAGGTGGCTGAAGTATTGAGGCGTCGATTGAAATCCAAGGCTTCTGGATCTTCTGAGAGTTCCTTGAAACTTCAAAATACAGAAGCAAGATTGACAGAGCTTAAATCCACTGCAGTGGCACTTGGCCGAGAAGCGACTTCTGCAATGTTGTCAGTTGAGGCTCAGCAGCAACAGATGACTTTCCAGAAGCTTCTTACTATGGTTGATGCTGAAAGATCTTATCATCAACATGCGCTTACTATTCTAGAGAAGCTACATTCTGAGATGATTCTGGAGAAGCTACCACAAGAATTTTCATTAGAATCAGAGACAGTTCATCCAAATGCTAGTTCAAAGAGATCCGATGATCATGAACAACTTACTCAAGATGGCAATTTTTTCATTGCAAGAGCTATACACCCTTTCGACGCTCAAGCAGATGGAGAGTTGAATCTATCAATTGATGATTATGTTGTGGTTCGTGAGGTGGGCCCTAATGGATGGTCTGAAGGGGAATGCAAGGGCAAGGCCGGGTGGTTTCCATCTGCATATATAGAGAGGCACGAAAAAGCACCAGTGAGCAAATTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

354

Amino Acids

40.06

Weight (kDa)

6.15

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_2	PF07653	293 - 343	2.4e-06	Variant SH3 domain
SH3_1	PF00018	294 - 339	1.7e-08	SH3 domain
SH3_9	PF14604	295 - 343	3.8e-10	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	4 cut(s)	373, 386, 547, 825
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	120, 782
AcuI	CTGAAG	3 cut(s)	279, 522, 999
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	2 cut(s)	301, 334
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	805, 837
AleI	CACNNNNGTG	1 cut(s)	605
Alw26I	GTCTC	3 cut(s)	359, 432, 794
AlwI	GGATC	4 cut(s)	373, 386, 547, 825
AoxI	GGCC	3 cut(s)	616, 961, 999
ApaI	GGGCCC	1 cut(s)	965
ApeKI	GCWGC	3 cut(s)	167, 267, 658
ApoI	RAATTY	2 cut(s)	120, 782
AspA2I	CCTAGG	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	2 cut(s)	961, 962
AsuC2I	CCSGG	1 cut(s)	1003
AsuHPI	GGTGA	1 cut(s)	398
AvrII	CCTAGG	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	374
BaeGI	GKGCMC	2 cut(s)	415, 965
BaeI	ACNNNNGTAYC	2 cut(s)	283, 316
BamHI	GGATCC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	965
BbvI	GCAGC	3 cut(s)	179, 254, 670
BccI	CCATC	6 cut(s)	138, 227, 854, 905, 966, 1021
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	838
BcnI	CCSGG	1 cut(s)	1003
BcoDI	GTCTC	3 cut(s)	359, 432, 794
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	5 cut(s)	297, 308, 383, 737, 819
BfmI	CTRYAG	1 cut(s)	603
BfuAI	ACCTGC	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	497
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	3 cut(s)	168, 268, 659
BlnI	CCTAGG	1 cut(s)	382
BlpI	GCTNAGC	2 cut(s)	48, 654
BlsI	GCNGC	3 cut(s)	169, 269, 660
Bme1390I	CCNGG	2 cut(s)	494, 1003
BmgT120I	GGNCC	2 cut(s)	961, 962
BmiI	GGNNCC	2 cut(s)	380, 963
BmrFI	CCNGG	2 cut(s)	494, 1003
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	2 cut(s)	430, 688
BmuI	ACTGGG	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	785
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu1102I	GCTNAGC	2 cut(s)	48, 654
BpuEI	CTTGAG	2 cut(s)	840, 888
BpuMI	CCSGG	1 cut(s)	1003
BsaBI	GATNNNNATC	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	382, 492, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bse1I	ACTGG	2 cut(s)	427, 1046
Bse21I	CCTNAGG	1 cut(s)	374
Bse3DI	GCAATG	2 cut(s)	642, 873
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	3 cut(s)	382, 492, 528
BseGI	GGATG	3 cut(s)	445, 808, 977
BseJI	GATNNNNATC	1 cut(s)	523
BseMI	GCAATG	2 cut(s)	642, 873
BseMII	CTCAG	4 cut(s)	46, 537, 668, 744
BseNI	ACTGG	2 cut(s)	427, 1046
BseSI	GKGCMC	2 cut(s)	415, 965
BseXI	GCAGC	3 cut(s)	179, 254, 670
BshFI	GGCC	3 cut(s)	618, 963, 1001
BsiSI	CCGG	1 cut(s)	1002
BsmAI	GTCTC	3 cut(s)	359, 432, 794
BsmI	GAATGC	1 cut(s)	992
BsnI	GGCC	3 cut(s)	618, 963, 1001
Bso31I	GGTCTC	1 cut(s)	432
Bsp120I	GGGCCC	1 cut(s)	961
Bsp1286I	GDGCHC	2 cut(s)	415, 965
Bsp143I	GATC	5 cut(s)	378, 539, 707, 830, 838
Bsp1720I	GCTNAGC	2 cut(s)	48, 654
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	3 cut(s)	618, 963, 1001
BspCNI	CTCAG	4 cut(s)	45, 538, 667, 745
BspHI	TCATGA	2 cut(s)	142, 841
BspLI	GGNNCC	2 cut(s)	380, 963
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	4 cut(s)	373, 386, 547, 825
BspTNI	GGTCTC	1 cut(s)	432
BsrDI	GCAATG	2 cut(s)	642, 873
BsrI	ACTGG	2 cut(s)	427, 1046
BssECI	CCNNGG	3 cut(s)	382, 492, 528
BssMI	GATC	5 cut(s)	378, 539, 707, 830, 838
BssNI	GRCGYC	1 cut(s)	514
BssT1I	CCWWGG	2 cut(s)	382, 528
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	805
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	514
BstC8I	GCNNGC	4 cut(s)	21, 25, 29, 60
BstDEI	CTNAG	6 cut(s)	32, 48, 374, 546, 654, 753
BstF5I	GGATG	3 cut(s)	445, 808, 977
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	5 cut(s)	381, 542, 710, 833, 841
BstMAI	GTCTC	3 cut(s)	359, 432, 794
BstMBI	GATC	5 cut(s)	378, 539, 707, 830, 838
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 181, 497, 632
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	492, 1001
BstSFI	CTRYAG	1 cut(s)	603
BstSLI	GKGCMC	2 cut(s)	415, 965
BstV1I	GCAGC	3 cut(s)	179, 254, 670
BstX2I	RGATCY	4 cut(s)	378, 539, 707, 830
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	4 cut(s)	378, 539, 707, 830
Bsu36I	CCTNAGG	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	618, 963, 1001
BtsCI	GGATG	3 cut(s)	445, 808, 977
BtsI	GCAGTG	2 cut(s)	600, 612
BtsIMutI	CAGTG	3 cut(s)	600, 612, 1053
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	4 cut(s)	21, 25, 29, 60
CciI	TCATGA	2 cut(s)	142, 841
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	961, 962
CseI	GACGC	3 cut(s)	464, 503, 908
Csp6I	GTAC	2 cut(s)	300, 333
CviAII	CATG	4 cut(s)	143, 341, 722, 842
CviQI	GTAC	2 cut(s)	300, 333
DdeI	CTNAG	6 cut(s)	32, 48, 374, 546, 654, 753
DpnI	GATC	5 cut(s)	380, 541, 709, 832, 840
DpnII	GATC	5 cut(s)	378, 539, 707, 830, 838
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	382, 528
Eco24I	GRGCYC	1 cut(s)	965
Eco31I	GGTCTC	1 cut(s)	432
Eco57I	CTGAAG	3 cut(s)	279, 522, 999
Eco81I	CCTNAGG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	382, 528
EcoT38I	GRGCYC	1 cut(s)	965
ErhI	CCWWGG	2 cut(s)	382, 528
FaeI	CATG	4 cut(s)	146, 344, 725, 845
FatI	CATG	4 cut(s)	142, 340, 721, 841
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	3 cut(s)	168, 268, 659
FokI	GGATG	3 cut(s)	452, 795, 984
FriOI	GRGCYC	1 cut(s)	965
Fsp4HI	GCNGC	3 cut(s)	168, 268, 659
FspBI	CTAG	5 cut(s)	297, 308, 383, 737, 819
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	3 cut(s)	168, 268, 659
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	3 cut(s)	618, 963, 1001
HapII	CCGG	1 cut(s)	1002
HgaI	GACGC	3 cut(s)	464, 503, 908
HhaI	GCGC	1 cut(s)	727
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	4 cut(s)	146, 344, 725, 845
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HindIII	AAGCTT	2 cut(s)	207, 680
HinfI	GANTC	6 cut(s)	5, 344, 454, 760, 794, 922
HpaII	CCGG	1 cut(s)	1002
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	5 cut(s)	547, 754, 799, 835, 979
Hpy188III	TCNNGA	9 cut(s)	143, 479, 537, 676, 737, 764, 842, 857, 953
Hpy99I	CGWCG	2 cut(s)	519, 902
HpyAV	CCTTC	1 cut(s)	974
HpyCH4III	ACNGT	1 cut(s)	805
HpyCH4V	TGCA	7 cut(s)	27, 270, 605, 635, 878, 990, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 181, 497, 632
HpyF3I	CTNAG	6 cut(s)	32, 48, 374, 546, 654, 753
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	4 cut(s)	146, 344, 725, 845
HspAI	GCGC	1 cut(s)	725
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	5 cut(s)	378, 539, 707, 830, 838
LmnI	GCTCC	2 cut(s)	37, 278
Lsp1109I	GCAGC	3 cut(s)	179, 254, 670
LweI	GCATC	2 cut(s)	430, 688
MaeI	CTAG	5 cut(s)	297, 308, 383, 737, 819
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	5 cut(s)	380, 541, 709, 832, 840
MboI	GATC	5 cut(s)	378, 539, 707, 830, 838
MboII	GAAGA	4 cut(s)	272, 365, 368, 534
MfeI	CAATTG	2 cut(s)	348, 930
MflI	RGATCY	4 cut(s)	378, 539, 707, 830
MhlI	GDGCHC	2 cut(s)	415, 965
MluCI	AATT	6 cut(s)	120, 348, 782, 865, 930, 1055
MlyI	GAGTC	2 cut(s)	14, 448
MnlI	CCTC	7 cut(s)	315, 430, 475, 504, 643, 949, 1023
MseI	TTAA	3 cut(s)	86, 227, 594
MslI	CAYNNNNRTG	4 cut(s)	462, 605, 720, 813
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	1 cut(s)	1002
MspR9I	CCNGG	2 cut(s)	494, 1003
MunI	CAATTG	2 cut(s)	348, 930
Mva1269I	GAATGC	1 cut(s)	992
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	37, 181, 497, 632
NciI	CCSGG	1 cut(s)	1003
NdeII	GATC	5 cut(s)	378, 539, 707, 830, 838
NlaIII	CATG	4 cut(s)	146, 344, 725, 845
NlaIV	GGNNCC	2 cut(s)	380, 963
NmeAIII	GCCGAG	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	725
OliI	CACNNNNGTG	1 cut(s)	605
PagI	TCATGA	2 cut(s)	142, 841
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	992
PfeI	GAWTC	4 cut(s)	344, 760, 794, 922
PkrI	GCNGC	3 cut(s)	169, 269, 660
PleI	GAGTC	2 cut(s)	13, 448
PpsI	GAGTC	2 cut(s)	13, 448
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	380, 963
PspOMI	GGGCCC	1 cut(s)	961
PspPI	GGNCC	2 cut(s)	961, 962
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	4 cut(s)	378, 539, 707, 830
RsaI	GTAC	2 cut(s)	301, 334
RsaNI	GTAC	2 cut(s)	300, 333
RseI	CAYNNNNRTG	4 cut(s)	462, 605, 720, 813
SaqAI	TTAA	3 cut(s)	86, 227, 594
SatI	GCNGC	3 cut(s)	168, 268, 659
Sau3AI	GATC	5 cut(s)	378, 539, 707, 830, 838
Sau96I	GGNCC	2 cut(s)	961, 962
SchI	GAGTC	2 cut(s)	14, 448
ScrFI	CCNGG	2 cut(s)	494, 1003
SduI	GDGCHC	2 cut(s)	415, 965
SfaNI	GCATC	2 cut(s)	430, 688
SfcI	CTRYAG	1 cut(s)	603
SmiMI	CAYNNNNRTG	4 cut(s)	462, 605, 720, 813
SmlI	CTYRAG	2 cut(s)	855, 903
SmoI	CTYRAG	2 cut(s)	855, 903
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	6 cut(s)	120, 348, 782, 865, 930, 1055
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	5 cut(s)	297, 308, 383, 737, 819
StyD4I	CCNGG	2 cut(s)	492, 1001
StyI	CCWWGG	2 cut(s)	382, 528
TaaI	ACNGT	1 cut(s)	805
TaqI	TCGA	3 cut(s)	486, 517, 897
TasI	AATT	6 cut(s)	120, 348, 782, 865, 930, 1055
TfiI	GAWTC	4 cut(s)	344, 760, 794, 922
Tru1I	TTAA	3 cut(s)	86, 227, 594
Tru9I	TTAA	3 cut(s)	86, 227, 594
TscAI	CASTG	3 cut(s)	607, 612, 1053
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	3 cut(s)	167, 267, 658
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	8 cut(s)	108, 126, 131, 414, 777, 797, 858, 862
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	3 cut(s)	607, 612, 1053
XapI	RAATTY	2 cut(s)	120, 782
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	1 cut(s)	725
XmaJI	CCTAGG	1 cut(s)	382
XspI	CTAG	5 cut(s)	297, 308, 383, 737, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.