Rroxscaffold_3G00245130

Src homology 3 domains

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
37948399 .. 37956557
8159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245130.1

Sequence Viewer

Length: 1281 bp
ATGGAGGAGATTCATCTGTGGAAGCTGGAGACGACGTTGGCAGCTGCGGGGGCAAAGAAGAGGAGGTTCACCTTAGGATTTAGTGGCGGAGCTAAACGAGCGTTGCAGCTGGTAGATGAGGAGGCTGTGGCAGTAACGTCGGAGGAGGATGATCCGACCATGGTCTTGCTGTTTATGGAGTCCATACGGAAGCAAGCCAGCAAGCTCAGGGAGCAAGTCGCTAAGCAACAGCAGAAACAAAAAGTACGAAGGAGTTTACTGAAGGGTGAAGAACCTTCCGTGCCTGGTAGGTTAGATAGTGTTAAGCTGCAGGCAGAGGCTGTATTGAAACGATTGGGAAGTTTAAGTAATGAAGCTGTTATGGTTGATGAAGCTGAAATTCTGTGCCATCAACAACTTCATGATTTATACACTTCTACGAGGGCAGCGAAGTTGGCTGAAGATTGCTGCAAATATGGAGCTGAAAATCAAAACACTAGTACCCCTCTAGTTAGAGCTTCAACTTACTTTGGTACTTCACATGATTCAATTGAAGAAGAGAGAGAGACTTTCCTTAGGATCTTAGGTGAGCAGGTTTATGAACCTTTACGGGCACAACTAACTGGATCTCCTTTGGAGGATGCTCGTCACTTGACTCATCGTTATGATAAATTGCGTCAGGAGGTCGAAGCCCAGGTGGCTGAAGTATTGAGGCGTCGATTGAAATCCAAGGCTTCTGGATCTTCTGAGAGTTCCTTGAAGCTTCAAAATACAGAAGCAAGATTGACAGAGCTTAAATCCACTGCAGTGGCACTTGGCCGAGAAGCGACTTCTGCAATGTTGTCAGTTGAGGCTCAGCAGCAACAGATGACTTTCCAGAAGCTTCTTACTATGGTTGATGCTGAAAGATCTTATCATCAACATGCGCTTGCTATTCTAGAGAAGCTACATTCTGAGGTTGTATTATGGAGTAGGGCTCTGCTTGTTTTGTCAATGATTCTGGAGAAGCTACCACAAGAATTTTCATTAGAATCAGAGACAGTGCATCCAAATGCTAGTTCAAAGAGATCCGATGATCATGAACAACTTACTCAAGATGGCAAATTTTTCATTGCAAGAGCTATACACCCTTTTGATGCTCAAGCAGATGGAGAGTTGAATCTATCAATTGATGATTATGTTGTGGTTCGTGAGGTGGGCCCTAATGGATGGTCTGAAGGGGAATGCAACGGCAAGGCCGGGTGGTTTCCATCTGCATATATAGAGAGGCAGGAAAAAGCACCAGTGAGCAAATTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

47.77

Weight (kDa)

5.84

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_2 PF07653 365 - 415 1.2e-06 Variant SH3 domain
SH3_1 PF00018 366 - 411 2.5e-08 SH3 domain
SH3_9 PF14604 367 - 415 3.2e-10 Variant SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 562
AciI CCGC 2 cut(s) 47, 87
AclWI GGATC 5 cut(s) 146, 566, 613, 727, 1041
AcoI YGGCCR 1 cut(s) 796
AcsI RAATTY 3 cut(s) 378, 998, 1082
AcuI CTGAAG 4 cut(s) 281, 459, 702, 1215
AcyI GRCGYC 1 cut(s) 694
AfaI GTAC 3 cut(s) 246, 481, 514
AgsI TTSAA 9 cut(s) 328, 501, 528, 533, 703, 739, 746, 1041, 1138
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 2 cut(s) 283, 672
AjuI GAANNNNNNNTTGG 2 cut(s) 1021, 1053
AleI CACNNNNGTG 1 cut(s) 785
Alw26I GTCTC 3 cut(s) 23, 539, 1010
AlwI GGATC 5 cut(s) 146, 566, 613, 727, 1041
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 3 cut(s) 796, 1177, 1215
ApaI GGGCCC 1 cut(s) 1181
ApeKI GCWGC 7 cut(s) 41, 44, 106, 307, 425, 447, 838
ApoI RAATTY 3 cut(s) 378, 998, 1082
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 2 cut(s) 1177, 1178
AsuC2I CCSGG 1 cut(s) 1219
AsuHPI GGTGA 3 cut(s) 61, 278, 578
AxyI CCTNAGG 2 cut(s) 73, 554
BaeGI GKGCMC 2 cut(s) 595, 1181
BaeI ACNNNNGTAYC 2 cut(s) 463, 496
BanII GRGCYC 2 cut(s) 958, 1181
BbvI GCAGC 7 cut(s) 31, 53, 118, 294, 434, 437, 850
BccI CCATC 5 cut(s) 396, 1070, 1121, 1182, 1237
BceAI ACGGC 1 cut(s) 1225
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BciT130I CCWGG 2 cut(s) 285, 674
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 1 cut(s) 1219
BcoDI GTCTC 3 cut(s) 23, 539, 1010
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 4 cut(s) 477, 488, 917, 1035
BfmI CTRYAG 2 cut(s) 308, 783
BfuAI ACCTGC 1 cut(s) 562
BglI GCCNNNNNGGC 1 cut(s) 677
BglII AGATCT 1 cut(s) 887
BisI GCNGC 7 cut(s) 42, 45, 107, 308, 426, 448, 839
BlpI GCTNAGC 2 cut(s) 222, 834
BlsI GCNGC 7 cut(s) 43, 46, 108, 309, 427, 449, 840
Bme1390I CCNGG 3 cut(s) 285, 674, 1219
BmgT120I GGNCC 2 cut(s) 1177, 1178
BmiI GGNNCC 1 cut(s) 1179
BmrFI CCNGG 3 cut(s) 285, 674, 1219
BmsI GCATC 4 cut(s) 610, 868, 1033, 1105
BoxI GACNNNNGTC 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 940, 972
BpmI CTGGAG 2 cut(s) 47, 1001
Bpu10I CCTNAGC 1 cut(s) 206
Bpu1102I GCTNAGC 2 cut(s) 222, 834
BpuEI CTTGAG 2 cut(s) 1056, 1104
BpuMI CCSGG 1 cut(s) 1219
BsaBI GATNNNNATC 1 cut(s) 703
BsaHI GRCGYC 1 cut(s) 694
BsaJI CCNNGG 3 cut(s) 159, 672, 708
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 592, 622
Bse1I ACTGG 2 cut(s) 607, 1262
Bse21I CCTNAGG 2 cut(s) 73, 554
Bse3DI GCAATG 2 cut(s) 822, 1089
Bse8I GATNNNNATC 1 cut(s) 703
BseBI CCWGG 2 cut(s) 285, 674
BseDI CCNNGG 3 cut(s) 159, 672, 708
BseGI GGATG 4 cut(s) 154, 625, 1024, 1193
BseJI GATNNNNATC 1 cut(s) 703
BseMI GCAATG 2 cut(s) 822, 1089
BseMII CTCAG 4 cut(s) 220, 717, 848, 924
BseNI ACTGG 2 cut(s) 607, 1262
BseRI GAGGAG 4 cut(s) 20, 76, 134, 158
BseSI GKGCMC 2 cut(s) 595, 1181
BseXI GCAGC 7 cut(s) 31, 53, 118, 294, 434, 437, 850
BshFI GGCC 3 cut(s) 798, 1179, 1217
BsiSI CCGG 1 cut(s) 1218
BsmAI GTCTC 3 cut(s) 23, 539, 1010
BsmBI CGTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 1208
BsnI GGCC 3 cut(s) 798, 1179, 1217
Bsp120I GGGCCC 1 cut(s) 1177
Bsp1286I GDGCHC 3 cut(s) 595, 958, 1181
Bsp143I GATC 7 cut(s) 151, 558, 605, 719, 887, 1046, 1054
Bsp1720I GCTNAGC 2 cut(s) 222, 834
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 2 cut(s) 47, 87
BspANI GGCC 3 cut(s) 798, 1179, 1217
BspCNI CTCAG 4 cut(s) 219, 718, 847, 925
BspHI TCATGA 2 cut(s) 400, 1057
BspLI GGNNCC 1 cut(s) 1179
BspMAI CTGCAG 2 cut(s) 312, 787
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 5 cut(s) 146, 566, 613, 727, 1041
BsrDI GCAATG 2 cut(s) 822, 1089
BsrI ACTGG 2 cut(s) 607, 1262
BssECI CCNNGG 3 cut(s) 159, 672, 708
BssMI GATC 7 cut(s) 151, 558, 605, 719, 887, 1046, 1054
BssNI GRCGYC 1 cut(s) 694
BssT1I CCWWGG 2 cut(s) 159, 708
Bst2UI CCWGG 2 cut(s) 285, 674
Bst4CI ACNGT 1 cut(s) 1021
Bst6I CTCTTC 2 cut(s) 53, 531
BstACI GRCGYC 1 cut(s) 694
BstC8I GCNNGC 5 cut(s) 195, 199, 203, 312, 909
BstDEI CTNAG 8 cut(s) 73, 206, 222, 554, 562, 726, 834, 933
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 4 cut(s) 154, 625, 1024, 1193
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 7 cut(s) 154, 561, 608, 722, 890, 1049, 1057
BstMAI GTCTC 3 cut(s) 23, 539, 1010
BstMBI GATC 7 cut(s) 151, 558, 605, 719, 887, 1046, 1054
BstMWI GCNNNNNNNGC 6 cut(s) 50, 98, 211, 434, 677, 812
BstNI CCWGG 2 cut(s) 285, 674
BstNSI RCATGY 1 cut(s) 905
BstPAI GACNNNNGTC 1 cut(s) 161
BstSCI CCNGG 3 cut(s) 283, 672, 1217
BstSFI CTRYAG 2 cut(s) 308, 783
BstSLI GKGCMC 2 cut(s) 595, 1181
BstV1I GCAGC 7 cut(s) 31, 53, 118, 294, 434, 437, 850
BstX2I RGATCY 5 cut(s) 558, 605, 719, 887, 1046
BstXI CCANNNNNNTGG 1 cut(s) 787
BstYI RGATCY 5 cut(s) 558, 605, 719, 887, 1046
Bsu36I CCTNAGG 2 cut(s) 73, 554
BsuRI GGCC 3 cut(s) 798, 1179, 1217
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 4 cut(s) 154, 625, 1024, 1193
BtsI GCAGTG 2 cut(s) 780, 792
BtsIMutI CAGTG 4 cut(s) 780, 792, 1026, 1269
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 5 cut(s) 195, 199, 203, 312, 909
CaiI CAGNNNCTG 1 cut(s) 320
CciI TCATGA 2 cut(s) 400, 1057
CfoI GCGC 1 cut(s) 907
Cfr13I GGNCC 2 cut(s) 1177, 1178
CseI GACGC 2 cut(s) 644, 683
Csp6I GTAC 3 cut(s) 245, 480, 513
CviAII CATG 5 cut(s) 160, 401, 521, 902, 1058
CviQI GTAC 3 cut(s) 245, 480, 513
DdeI CTNAG 8 cut(s) 73, 206, 222, 554, 562, 726, 834, 933
DpnI GATC 7 cut(s) 153, 560, 607, 721, 889, 1048, 1056
DpnII GATC 7 cut(s) 151, 558, 605, 719, 887, 1046, 1054
EaeI YGGCCR 1 cut(s) 796
Eam1104I CTCTTC 2 cut(s) 53, 531
EarI CTCTTC 2 cut(s) 53, 531
EciI GGCGGA 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 159, 708
Eco24I GRGCYC 2 cut(s) 958, 1181
Eco57I CTGAAG 4 cut(s) 281, 459, 702, 1215
Eco81I CCTNAGG 2 cut(s) 73, 554
EcoO109I RGGNCCY 1 cut(s) 1178
EcoRII CCWGG 2 cut(s) 283, 672
EcoT14I CCWWGG 2 cut(s) 159, 708
EcoT38I GRGCYC 2 cut(s) 958, 1181
ErhI CCWWGG 2 cut(s) 159, 708
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 5 cut(s) 163, 404, 524, 905, 1061
FatI CATG 5 cut(s) 159, 400, 520, 901, 1057
FauI CCCGC 1 cut(s) 40
FbaI TGATCA 1 cut(s) 1054
Fnu4HI GCNGC 7 cut(s) 42, 45, 107, 308, 426, 448, 839
FokI GGATG 4 cut(s) 161, 632, 1011, 1200
FriOI GRGCYC 2 cut(s) 958, 1181
Fsp4HI GCNGC 7 cut(s) 42, 45, 107, 308, 426, 448, 839
FspBI CTAG 4 cut(s) 477, 488, 917, 1035
GlaI GCGC 1 cut(s) 906
GluI GCNGC 7 cut(s) 42, 45, 107, 308, 426, 448, 839
GsuI CTGGAG 2 cut(s) 47, 1001
HaeIII GGCC 3 cut(s) 798, 1179, 1217
HapII CCGG 1 cut(s) 1218
HgaI GACGC 2 cut(s) 644, 683
HhaI GCGC 1 cut(s) 907
Hin1I GRCGYC 1 cut(s) 694
Hin1II CATG 5 cut(s) 163, 404, 524, 905, 1061
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HindIII AAGCTT 2 cut(s) 740, 860
HinfI GANTC 7 cut(s) 10, 179, 524, 634, 976, 1010, 1138
HpaII CCGG 1 cut(s) 1218
HphI GGTGA 3 cut(s) 61, 278, 578
Hpy166II GTNNAC 2 cut(s) 69, 257
Hpy188I TCNGA 7 cut(s) 142, 156, 727, 934, 1015, 1051, 1195
Hpy188III TCNNGA 9 cut(s) 401, 659, 717, 856, 917, 980, 1058, 1073, 1169
Hpy8I GTNNAC 2 cut(s) 69, 257
Hpy99I CGWCG 3 cut(s) 37, 142, 699
HpyAV CCTTC 4 cut(s) 243, 256, 285, 1190
HpyCH4III ACNGT 1 cut(s) 1021
HpyCH4IV ACGT 2 cut(s) 35, 137
HpyCH4V TGCA 9 cut(s) 106, 310, 450, 785, 815, 1024, 1094, 1206, 1235
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 98, 211, 434, 677, 812
HpyF3I CTNAG 8 cut(s) 73, 206, 222, 554, 562, 726, 834, 933
HpySE526I ACGT 2 cut(s) 35, 137
Hsp92I GRCGYC 1 cut(s) 694
Hsp92II CATG 5 cut(s) 163, 404, 524, 905, 1061
HspAI GCGC 1 cut(s) 905
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 7 cut(s) 151, 558, 605, 719, 887, 1046, 1054
LmnI GCTCC 3 cut(s) 89, 211, 458
Lsp1109I GCAGC 7 cut(s) 31, 53, 118, 294, 434, 437, 850
LweI GCATC 4 cut(s) 610, 868, 1033, 1105
MaeI CTAG 4 cut(s) 477, 488, 917, 1035
MaeII ACGT 2 cut(s) 35, 137
MaeIII GTNAC 2 cut(s) 133, 626
MalI GATC 7 cut(s) 153, 560, 607, 721, 889, 1048, 1056
MboI GATC 7 cut(s) 151, 558, 605, 719, 887, 1046, 1054
MboII GAAGA 6 cut(s) 70, 281, 452, 545, 548, 714
MfeI CAATTG 2 cut(s) 528, 1146
MflI RGATCY 5 cut(s) 558, 605, 719, 887, 1046
MhlI GDGCHC 3 cut(s) 595, 958, 1181
MluCI AATT 7 cut(s) 378, 528, 650, 998, 1082, 1146, 1271
MlyI GAGTC 2 cut(s) 188, 628
MmeI TCCRAC 2 cut(s) 120, 179
MseI TTAA 3 cut(s) 303, 344, 774
MslI CAYNNNNRTG 4 cut(s) 642, 785, 900, 1029
MspA1I CMGCKG 2 cut(s) 44, 109
MspI CCGG 1 cut(s) 1218
MspR9I CCNGG 3 cut(s) 285, 674, 1219
MunI CAATTG 2 cut(s) 528, 1146
Mva1269I GAATGC 1 cut(s) 1208
MvaI CCWGG 2 cut(s) 285, 674
MwoI GCNNNNNNNGC 6 cut(s) 50, 98, 211, 434, 677, 812
NciI CCSGG 1 cut(s) 1219
NcoI CCATGG 1 cut(s) 159
NdeII GATC 7 cut(s) 151, 558, 605, 719, 887, 1046, 1054
NlaIII CATG 5 cut(s) 163, 404, 524, 905, 1061
NlaIV GGNNCC 1 cut(s) 1179
NmeAIII GCCGAG 1 cut(s) 824
NmuCI GTSAC 1 cut(s) 626
NspI RCATGY 1 cut(s) 905
OliI CACNNNNGTG 1 cut(s) 785
PagI TCATGA 2 cut(s) 400, 1057
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PctI GAATGC 1 cut(s) 1208
PfeI GAWTC 5 cut(s) 10, 524, 976, 1010, 1138
PkrI GCNGC 7 cut(s) 43, 46, 108, 309, 427, 449, 840
PleI GAGTC 2 cut(s) 187, 628
PpsI GAGTC 2 cut(s) 187, 628
PshAI GACNNNNGTC 1 cut(s) 161
Psp6I CCWGG 2 cut(s) 283, 672
PspGI CCWGG 2 cut(s) 283, 672
PspN4I GGNNCC 1 cut(s) 1179
PspOMI GGGCCC 1 cut(s) 1177
PspPI GGNCC 2 cut(s) 1177, 1178
PstI CTGCAG 2 cut(s) 312, 787
PstNI CAGNNNCTG 1 cut(s) 320
PsuI RGATCY 5 cut(s) 558, 605, 719, 887, 1046
PvuII CAGCTG 2 cut(s) 44, 109
RsaI GTAC 3 cut(s) 246, 481, 514
RsaNI GTAC 3 cut(s) 245, 480, 513
RseI CAYNNNNRTG 4 cut(s) 642, 785, 900, 1029
SaqAI TTAA 3 cut(s) 303, 344, 774
SatI GCNGC 7 cut(s) 42, 45, 107, 308, 426, 448, 839
Sau3AI GATC 7 cut(s) 151, 558, 605, 719, 887, 1046, 1054
Sau96I GGNCC 2 cut(s) 1177, 1178
SchI GAGTC 2 cut(s) 188, 628
ScrFI CCNGG 3 cut(s) 285, 674, 1219
SduI GDGCHC 3 cut(s) 595, 958, 1181
SfaNI GCATC 4 cut(s) 610, 868, 1033, 1105
SfcI CTRYAG 2 cut(s) 308, 783
SmiMI CAYNNNNRTG 4 cut(s) 642, 785, 900, 1029
SmlI CTYRAG 2 cut(s) 1071, 1119
SmoI CTYRAG 2 cut(s) 1071, 1119
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 7 cut(s) 378, 528, 650, 998, 1082, 1146, 1271
SsiI CCGC 2 cut(s) 47, 87
SspMI CTAG 4 cut(s) 477, 488, 917, 1035
StyD4I CCNGG 3 cut(s) 283, 672, 1217
StyI CCWWGG 2 cut(s) 159, 708
TaaI ACNGT 1 cut(s) 1021
TaiI ACGT 2 cut(s) 38, 140
TaqI TCGA 2 cut(s) 666, 697
TasI AATT 7 cut(s) 378, 528, 650, 998, 1082, 1146, 1271
TfiI GAWTC 5 cut(s) 10, 524, 976, 1010, 1138
Tru1I TTAA 3 cut(s) 303, 344, 774
Tru9I TTAA 3 cut(s) 303, 344, 774
TscAI CASTG 4 cut(s) 787, 792, 1026, 1269
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 7 cut(s) 41, 44, 106, 307, 425, 447, 838
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 7 cut(s) 366, 384, 389, 594, 993, 1074, 1078
TspGWI ACGGA 2 cut(s) 202, 268
TspRI CASTG 4 cut(s) 787, 792, 1026, 1269
XapI RAATTY 3 cut(s) 378, 998, 1082
XbaI TCTAGA 1 cut(s) 916
XceI RCATGY 1 cut(s) 905
XspI CTAG 4 cut(s) 477, 488, 917, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.