Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Reverse (-)

25452250 .. 25458691

Gene Structure 6442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG274200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAGTCCATACGGAAGCAAGCCTGCAAGCTCAGGGAGCAAGTCGCTAAGCAACAGCAGGCTGTATTGAAACGATTGGGAAGTTTAAGTAATGAAGCTGTTATGGTTGATGAAGCTGAAATTCTGTGCCATCAACAACTTCATGATTTATACACTTCTACGAGGGCAGCGAAGCATTTTCAGCGGAGTATTGTTCGGGGAGTTGAAGCTTTTATTTCCATTAGCTCAAAACAAATGGAAATAGTAAGGAAGTTGGCTGAAGATTGCTGCAAATATGGAGCTGAAAATCAAAACACTAGTGCCCCTCTAGTTAGAGCTTCAACTTACTTTGGTACTTCACATGATTCAATTGAAGAAGAGAGAGAGACTTTCCTTAGGATCCTAGGTGAGCAGGTTTATGAACCTTTACGGGCACAACTAACTGGGTCTCCTTTGGAGGATGCTCGTCACTTGACTCATCGTTATGATAAACTGCGTCAGGAGGTCGAAGCCCAGGTGGCTGAAGTATTGAGGCGTCGATTGAAATCCAAGGCTTCTGGATCTTCTGAGAGTTCCTTGAAGCTTCAAAATACAGAAGCAAGATTGACAGAGCTTAAATCCACTGCGGTGGCACTTGGCCGAGAAGCGACTTCTGCAATGTTGTCAGTTGAGGCTCAGCAGCAACAAATGACTTTCCAGAAGCTTCTTACTATGGTTGATGCTGAAAGATCTTATCATCAACATGCGCTTGCTATTCTAGAGAAGCTACATTCTGAGATGATTCTGGAAAAGCTACCACAAGAATTTTCATTAGAATCAGAGAAGGTGCATCCAAATGCTAGTTCAAAGAGATCCGATGATCATGAACAGCTTACTCAAGATGGCAATTTTTTCATTGCAAGAGTAAGGCCTTCAAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

300

Amino Acids

34.05

Weight (kDa)

7.19

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AciI	CCGC	2 cut(s)	184, 605
AclWI	GGATC	4 cut(s)	373, 386, 547, 825
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	120, 782
AcuI	CTGAAG	2 cut(s)	279, 522
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	1 cut(s)	334
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	805, 837
AleI	CACNNNNGTG	1 cut(s)	605
Alw26I	GTCTC	2 cut(s)	359, 432
AlwI	GGATC	4 cut(s)	373, 386, 547, 825
AoxI	GGCC	2 cut(s)	616, 887
ApeKI	GCWGC	3 cut(s)	167, 267, 658
ApoI	RAATTY	2 cut(s)	120, 782
AspA2I	CCTAGG	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	727
AsuHPI	GGTGA	1 cut(s)	398
AvrII	CCTAGG	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	374
BaeGI	GKGCMC	2 cut(s)	304, 415
BamHI	GGATCC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	179, 254, 670
BccI	CCATC	2 cut(s)	138, 854
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	838
BcoDI	GTCTC	2 cut(s)	359, 432
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	6 cut(s)	297, 308, 383, 737, 819, 901
BfuAI	ACCTGC	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	497
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	3 cut(s)	168, 268, 659
BlnI	CCTAGG	1 cut(s)	382
BlpI	GCTNAGC	2 cut(s)	48, 654
BlsI	GCNGC	3 cut(s)	169, 269, 660
Bme1390I	CCNGG	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	494
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	3 cut(s)	430, 688, 817
BmuI	ACTGGG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu1102I	GCTNAGC	2 cut(s)	48, 654
BpuEI	CTTGAG	1 cut(s)	840
BsaBI	GATNNNNATC	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	382, 492, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bse1I	ACTGG	1 cut(s)	427
Bse21I	CCTNAGG	1 cut(s)	374
Bse3DI	GCAATG	2 cut(s)	642, 873
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	3 cut(s)	382, 492, 528
BseGI	GGATG	2 cut(s)	445, 808
BseJI	GATNNNNATC	1 cut(s)	523
BseMI	GCAATG	2 cut(s)	642, 873
BseMII	CTCAG	4 cut(s)	46, 537, 668, 744
BseNI	ACTGG	1 cut(s)	427
BseSI	GKGCMC	2 cut(s)	304, 415
BseXI	GCAGC	3 cut(s)	179, 254, 670
BshFI	GGCC	2 cut(s)	618, 889
BsmAI	GTCTC	2 cut(s)	359, 432
BsnI	GGCC	2 cut(s)	618, 889
Bso31I	GGTCTC	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	304, 415
Bsp143I	GATC	5 cut(s)	378, 539, 707, 830, 838
Bsp1720I	GCTNAGC	2 cut(s)	48, 654
BspACI	CCGC	2 cut(s)	184, 605
BspANI	GGCC	2 cut(s)	618, 889
BspCNI	CTCAG	4 cut(s)	45, 538, 667, 745
BspHI	TCATGA	2 cut(s)	142, 841
BspLI	GGNNCC	1 cut(s)	380
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	4 cut(s)	373, 386, 547, 825
BspTNI	GGTCTC	1 cut(s)	432
BsrDI	GCAATG	2 cut(s)	642, 873
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	3 cut(s)	382, 492, 528
BssMI	GATC	5 cut(s)	378, 539, 707, 830, 838
BssNI	GRCGYC	1 cut(s)	514
BssT1I	CCWWGG	2 cut(s)	382, 528
Bst2UI	CCWGG	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	514
BstC8I	GCNNGC	5 cut(s)	21, 25, 29, 60, 729
BstDEI	CTNAG	6 cut(s)	32, 48, 374, 546, 654, 753
BstF5I	GGATG	2 cut(s)	445, 808
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	5 cut(s)	381, 542, 710, 833, 841
BstMAI	GTCTC	2 cut(s)	359, 432
BstMBI	GATC	5 cut(s)	378, 539, 707, 830, 838
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 181, 497, 632
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	492
BstSLI	GKGCMC	2 cut(s)	304, 415
BstV1I	GCAGC	3 cut(s)	179, 254, 670
BstX2I	RGATCY	4 cut(s)	378, 539, 707, 830
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	4 cut(s)	378, 539, 707, 830
Bsu36I	CCTNAGG	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	618, 889
BtsCI	GGATG	2 cut(s)	445, 808
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	600
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	5 cut(s)	21, 25, 29, 60, 729
CciI	TCATGA	2 cut(s)	142, 841
CfoI	GCGC	1 cut(s)	727
CseI	GACGC	2 cut(s)	464, 503
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	4 cut(s)	143, 341, 722, 842
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	6 cut(s)	32, 48, 374, 546, 654, 753
DpnI	GATC	5 cut(s)	380, 541, 709, 832, 840
DpnII	GATC	5 cut(s)	378, 539, 707, 830, 838
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	382, 528
Eco147I	AGGCCT	1 cut(s)	889
Eco31I	GGTCTC	1 cut(s)	432
Eco57I	CTGAAG	2 cut(s)	279, 522
Eco81I	CCTNAGG	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	382, 528
ErhI	CCWWGG	2 cut(s)	382, 528
FaeI	CATG	4 cut(s)	146, 344, 725, 845
FatI	CATG	4 cut(s)	142, 340, 721, 841
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	3 cut(s)	168, 268, 659
FokI	GGATG	2 cut(s)	452, 795
Fsp4HI	GCNGC	3 cut(s)	168, 268, 659
FspBI	CTAG	6 cut(s)	297, 308, 383, 737, 819, 901
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	3 cut(s)	168, 268, 659
HaeIII	GGCC	2 cut(s)	618, 889
HgaI	GACGC	2 cut(s)	464, 503
HhaI	GCGC	1 cut(s)	727
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	4 cut(s)	146, 344, 725, 845
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HindIII	AAGCTT	3 cut(s)	207, 560, 680
HinfI	GANTC	5 cut(s)	5, 344, 454, 760, 794
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	4 cut(s)	547, 754, 799, 835
Hpy188III	TCNNGA	8 cut(s)	143, 479, 537, 676, 737, 764, 842, 857
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	796, 900
HpyCH4V	TGCA	5 cut(s)	27, 270, 635, 808, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 181, 497, 632
HpyF3I	CTNAG	6 cut(s)	32, 48, 374, 546, 654, 753
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	4 cut(s)	146, 344, 725, 845
HspAI	GCGC	1 cut(s)	725
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	5 cut(s)	378, 539, 707, 830, 838
LmnI	GCTCC	2 cut(s)	37, 278
Lsp1109I	GCAGC	3 cut(s)	179, 254, 670
LweI	GCATC	3 cut(s)	430, 688, 817
MaeI	CTAG	6 cut(s)	297, 308, 383, 737, 819, 901
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	5 cut(s)	380, 541, 709, 832, 840
MboI	GATC	5 cut(s)	378, 539, 707, 830, 838
MboII	GAAGA	4 cut(s)	272, 365, 368, 534
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	4 cut(s)	378, 539, 707, 830
MhlI	GDGCHC	2 cut(s)	304, 415
MluCI	AATT	4 cut(s)	120, 348, 782, 865
MlyI	GAGTC	2 cut(s)	14, 448
MnlI	CCTC	6 cut(s)	156, 315, 430, 475, 504, 643
MseI	TTAA	2 cut(s)	86, 594
MslI	CAYNNNNRTG	4 cut(s)	462, 605, 720, 813
MspA1I	CMGCKG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	37, 181, 497, 632
NdeII	GATC	5 cut(s)	378, 539, 707, 830, 838
NlaIII	CATG	4 cut(s)	146, 344, 725, 845
NlaIV	GGNNCC	1 cut(s)	380
NmeAIII	GCCGAG	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	725
OliI	CACNNNNGTG	1 cut(s)	605
PagI	TCATGA	2 cut(s)	142, 841
PceI	AGGCCT	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	344, 760, 794
PkrI	GCNGC	3 cut(s)	169, 269, 660
PleI	GAGTC	2 cut(s)	13, 448
PpsI	GAGTC	2 cut(s)	13, 448
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	380
PsuI	RGATCY	4 cut(s)	378, 539, 707, 830
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	4 cut(s)	462, 605, 720, 813
SaqAI	TTAA	2 cut(s)	86, 594
SatI	GCNGC	3 cut(s)	168, 268, 659
Sau3AI	GATC	5 cut(s)	378, 539, 707, 830, 838
SchI	GAGTC	2 cut(s)	14, 448
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	2 cut(s)	304, 415
SfaNI	GCATC	3 cut(s)	430, 688, 817
SmiMI	CAYNNNNRTG	4 cut(s)	462, 605, 720, 813
SmlI	CTYRAG	1 cut(s)	855
SmoI	CTYRAG	1 cut(s)	855
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	4 cut(s)	120, 348, 782, 865
SseBI	AGGCCT	1 cut(s)	889
SsiI	CCGC	2 cut(s)	184, 605
SspMI	CTAG	6 cut(s)	297, 308, 383, 737, 819, 901
StuI	AGGCCT	1 cut(s)	889
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	2 cut(s)	382, 528
TaqI	TCGA	2 cut(s)	486, 517
TasI	AATT	4 cut(s)	120, 348, 782, 865
TfiI	GAWTC	3 cut(s)	344, 760, 794
Tru1I	TTAA	2 cut(s)	86, 594
Tru9I	TTAA	2 cut(s)	86, 594
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	3 cut(s)	167, 267, 658
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	7 cut(s)	108, 126, 131, 414, 777, 858, 862
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	607
XapI	RAATTY	2 cut(s)	120, 782
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	1 cut(s)	725
XmaJI	CCTAGG	1 cut(s)	382
XspI	CTAG	6 cut(s)	297, 308, 383, 737, 819, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.