Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Forward (+)

1846956 .. 1855319

Gene Structure 8364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G017200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGTCTATACGGAAGCAAGCCAGTAAGCTCAGGGAGCAAGTCGCAAAGCAGCAGCAGGCTGTATTGAAACGGTTGGGAAGCTTAGGTAATGAAGCTGTTATGATTGATGAAGCTGAACTTCTGTGCCACCAAAATCTTCAAGATTTATATAATTCAACGAGGGCAGCGAAGCATTTTCAGCGGAGTCTTGTTCGGGGAGTTGAAGCTTTTGTATCGATCAGCTCAAAACAAATGGAAATAGTGAGAAAGTTAGCCGAGGATTGCTGCAAATATGGAGCTGAAAATCAAAGCACTAGCACTCCTCTAGTGATAGCTTCTGATTACTTTGGTACTTCATATAATTCAATTGAAGTGGAGAGAGAGATATTTCTTAAGATCCTTGGTGAGCAGGTTGCTGAACCTTTACGGGCGCAAATAACAGGAGCTCCTTTGGAGGATGCTCGTCACTTGACTCATCGTTATGATAAACTGCGTCAGGAGGTGGAAGCCCAGGTGGCTGAAGTATTGAGGCGTCGGCTGAAATCCAGGGGCTCTGTATCTGCAGAGAGTTCTGTGAAGCTTCAGAATGCAGAAGCTAGATTGACAGAACTGAAATCTACAACAGTGGCACTTGGGCGAGAAGCAACTGCCGCAATGTTGTCAGTTGAGGAGCATCAGCAACAGATGACTTTCCATAAGCTTTGTACCATGGTCGATGCTGAGAGATCTTATCATCAACATGCTCTTGCTATTTTAGACAAGCTACATTCTGAGATGATTCTGGAAAAACTACCAAAAGAATTCTCATCACAATCTGAGAAAATGGATCCTGATACTAATTCAAATAGGTCTGATGATCATGGACAACTTTACCAGGATGACACTTTCTTCATTGCAAGAGCTATACACCCGTTTGATGCTCAAGCAGATGGAGAGTTGAATCTAGCAATTGATGATTATGTTGTGGTTCGTCAGGTGGGCCCTAATGGATGGTCTGAAGGAGAATGTAATGGCAAGGCCGGATGGTTTCCATCTGCATATATAGAGAGGCAGGAGAAAGCCCCTTCGGCCAAATTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

355

Amino Acids

39.84

Weight (kDa)

5.83

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AciI	CCGC	2 cut(s)	184, 633
AclWI	GGATC	3 cut(s)	373, 803, 816
AcoI	YGGCCR	1 cut(s)	1050
AcsI	RAATTY	1 cut(s)	782
AcuI	CTGAAG	3 cut(s)	522, 548, 999
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	2 cut(s)	334, 688
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	8 cut(s)	70, 143, 159, 206, 348, 353, 825, 922
AjnI	CCWGG	3 cut(s)	492, 527, 855
Alw21I	GWGCWC	1 cut(s)	430
AlwI	GGATC	3 cut(s)	373, 803, 816
AoxI	GGCC	3 cut(s)	961, 999, 1050
ApaI	GGGCCC	1 cut(s)	965
ApeKI	GCWGC	4 cut(s)	52, 55, 167, 267
ApoI	RAATTY	1 cut(s)	782
AseI	ATTAAT	1 cut(s)	1058
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	2 cut(s)	961, 962
AsuHPI	GGTGA	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	965
BamHI	GGATCC	1 cut(s)	808
BanII	GRGCYC	3 cut(s)	430, 536, 965
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	4 cut(s)	64, 67, 179, 254
BccI	CCATC	4 cut(s)	905, 966, 999, 1021
BciT130I	CCWGG	3 cut(s)	494, 529, 857
BclI	TGATCA	1 cut(s)	838
BfaI	CTAG	4 cut(s)	297, 308, 579, 926
BfmI	CTRYAG	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	382
BglI	GCCNNNNNGGC	2 cut(s)	497, 1049
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	5 cut(s)	53, 56, 168, 268, 633
BlsI	GCNGC	5 cut(s)	54, 57, 169, 269, 634
Bme1390I	CCNGG	3 cut(s)	494, 529, 857
BmgT120I	GGNCC	2 cut(s)	961, 962
BmiI	GGNNCC	2 cut(s)	810, 963
BmrFI	CCNGG	3 cut(s)	494, 529, 857
BmsI	GCATC	4 cut(s)	430, 664, 688, 889
Bpu10I	CCTNAGC	2 cut(s)	32, 85
BpuEI	CTTGAG	1 cut(s)	888
Bsa29I	ATCGAT	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	5 cut(s)	258, 382, 492, 528, 690
BsaXI	ACNNNNNCTCC	4 cut(s)	286, 316, 412, 442
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	2 cut(s)	642, 873
BseBI	CCWGG	3 cut(s)	494, 529, 857
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	5 cut(s)	258, 382, 492, 528, 690
BseGI	GGATG	4 cut(s)	445, 865, 977, 1010
BseMI	GCAATG	2 cut(s)	642, 873
BseMII	CTCAG	4 cut(s)	46, 693, 744, 789
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	294, 665
BseSI	GKGCMC	1 cut(s)	965
BseXI	GCAGC	4 cut(s)	64, 67, 179, 254
BshFI	GGCC	3 cut(s)	963, 1001, 1052
BshVI	ATCGAT	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	1002
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	3 cut(s)	963, 1001, 1052
Bsp120I	GGGCCC	1 cut(s)	961
Bsp1286I	GDGCHC	3 cut(s)	430, 536, 965
Bsp143I	GATC	5 cut(s)	219, 378, 707, 808, 838
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	2 cut(s)	184, 633
BspANI	GGCC	3 cut(s)	963, 1001, 1052
BspCNI	CTCAG	4 cut(s)	45, 694, 745, 790
BspDI	ATCGAT	1 cut(s)	218
BspLI	GGNNCC	2 cut(s)	810, 963
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	3 cut(s)	373, 803, 816
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	2 cut(s)	642, 873
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	5 cut(s)	258, 382, 492, 528, 690
BssMI	GATC	5 cut(s)	219, 378, 707, 808, 838
BssNI	GRCGYC	1 cut(s)	514
BssT1I	CCWWGG	2 cut(s)	382, 690
Bst2UI	CCWGG	3 cut(s)	494, 529, 857
Bst4CI	ACNGT	2 cut(s)	75, 607
BstACI	GRCGYC	1 cut(s)	514
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	21, 60
BstDEI	CTNAG	5 cut(s)	32, 85, 702, 753, 798
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	4 cut(s)	445, 865, 977, 1010
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	5 cut(s)	222, 381, 710, 811, 841
BstMBI	GATC	5 cut(s)	219, 378, 707, 808, 838
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 181, 497, 632, 1049
BstNI	CCWGG	3 cut(s)	494, 529, 857
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	3 cut(s)	492, 527, 855
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	965
BstV1I	GCAGC	4 cut(s)	64, 67, 179, 254
BstX2I	RGATCY	3 cut(s)	378, 707, 808
BstYI	RGATCY	3 cut(s)	378, 707, 808
Bsu15I	ATCGAT	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	963, 1001, 1052
BsuTUI	ATCGAT	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	4 cut(s)	445, 865, 977, 1010
BtsIMutI	CAGTG	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	21, 60
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	961, 962
ClaI	ATCGAT	1 cut(s)	218
CseI	GACGC	2 cut(s)	464, 503
Csp6I	GTAC	2 cut(s)	333, 687
CspCI	CAANNNNNGTGG	2 cut(s)	336, 371
CviAII	CATG	3 cut(s)	691, 722, 842
CviQI	GTAC	2 cut(s)	333, 687
DdeI	CTNAG	5 cut(s)	32, 85, 702, 753, 798
DpnI	GATC	5 cut(s)	221, 380, 709, 810, 840
DpnII	GATC	5 cut(s)	219, 378, 707, 808, 838
EaeI	YGGCCR	1 cut(s)	1050
Ecl136II	GAGCTC	1 cut(s)	428
Eco130I	CCWWGG	2 cut(s)	382, 690
Eco24I	GRGCYC	3 cut(s)	430, 536, 965
Eco53kI	GAGCTC	1 cut(s)	428
Eco57I	CTGAAG	3 cut(s)	522, 548, 999
EcoICRI	GAGCTC	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	3 cut(s)	492, 527, 855
EcoT14I	CCWWGG	2 cut(s)	382, 690
EcoT38I	GRGCYC	3 cut(s)	430, 536, 965
ErhI	CCWWGG	2 cut(s)	382, 690
FaeI	CATG	3 cut(s)	694, 725, 845
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	3 cut(s)	690, 721, 841
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	5 cut(s)	53, 56, 168, 268, 633
FokI	GGATG	4 cut(s)	452, 872, 984, 1017
FriOI	GRGCYC	3 cut(s)	430, 536, 965
Fsp4HI	GCNGC	5 cut(s)	53, 56, 168, 268, 633
FspBI	CTAG	4 cut(s)	297, 308, 579, 926
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	5 cut(s)	53, 56, 168, 268, 633
HaeIII	GGCC	3 cut(s)	963, 1001, 1052
HapII	CCGG	1 cut(s)	1002
HgaI	GACGC	2 cut(s)	464, 503
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	694, 725, 845
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HindIII	AAGCTT	4 cut(s)	82, 207, 560, 680
HinfI	GANTC	5 cut(s)	5, 187, 454, 760, 922
HpaII	CCGG	1 cut(s)	1002
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	6 cut(s)	322, 567, 754, 799, 835, 979
Hpy188III	TCNNGA	4 cut(s)	143, 479, 764, 812
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	974, 1056
HpyCH4III	ACNGT	2 cut(s)	75, 607
HpyCH4V	TGCA	5 cut(s)	270, 545, 572, 878, 1019
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 181, 497, 632, 1049
HpyF3I	CTNAG	5 cut(s)	32, 85, 702, 753, 798
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	3 cut(s)	694, 725, 845
HspAI	GCGC	1 cut(s)	413
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	5 cut(s)	219, 378, 707, 808, 838
LmnI	GCTCC	5 cut(s)	37, 278, 425, 433, 652
Lsp1109I	GCAGC	4 cut(s)	64, 67, 179, 254
LweI	GCATC	4 cut(s)	430, 664, 688, 889
MaeI	CTAG	4 cut(s)	297, 308, 579, 926
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	5 cut(s)	221, 380, 709, 810, 840
MboI	GATC	5 cut(s)	219, 378, 707, 808, 838
MboII	GAAGA	2 cut(s)	131, 862
MfeI	CAATTG	2 cut(s)	348, 930
MflI	RGATCY	3 cut(s)	378, 707, 808
MhlI	GDGCHC	3 cut(s)	430, 536, 965
MluCI	AATT	7 cut(s)	154, 343, 348, 782, 820, 930, 1055
MlyI	GAGTC	3 cut(s)	14, 196, 448
MnlI	CCTC	8 cut(s)	156, 253, 315, 430, 475, 504, 643, 1023
MseI	TTAA	2 cut(s)	375, 1058
MslI	CAYNNNNRTG	2 cut(s)	462, 720
MspA1I	CMGCKG	1 cut(s)	184
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	1002
MspR9I	CCNGG	3 cut(s)	494, 529, 857
MunI	CAATTG	2 cut(s)	348, 930
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	3 cut(s)	494, 529, 857
MwoI	GCNNNNNNNGC	5 cut(s)	37, 181, 497, 632, 1049
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	5 cut(s)	219, 378, 707, 808, 838
NlaIII	CATG	3 cut(s)	694, 725, 845
NlaIV	GGNNCC	2 cut(s)	810, 963
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	760, 922
PkrI	GCNGC	5 cut(s)	54, 57, 169, 269, 634
PleI	GAGTC	3 cut(s)	13, 195, 448
PpsI	GAGTC	3 cut(s)	13, 195, 448
PshBI	ATTAAT	1 cut(s)	1058
Psp124BI	GAGCTC	1 cut(s)	430
Psp6I	CCWGG	3 cut(s)	492, 527, 855
PspGI	CCWGG	3 cut(s)	492, 527, 855
PspN4I	GGNNCC	2 cut(s)	810, 963
PspOMI	GGGCCC	1 cut(s)	961
PspPI	GGNCC	2 cut(s)	961, 962
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	3 cut(s)	378, 707, 808
RsaI	GTAC	2 cut(s)	334, 688
RsaNI	GTAC	2 cut(s)	333, 687
RseI	CAYNNNNRTG	2 cut(s)	462, 720
SacI	GAGCTC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	375, 1058
SatI	GCNGC	5 cut(s)	53, 56, 168, 268, 633
Sau3AI	GATC	5 cut(s)	219, 378, 707, 808, 838
Sau96I	GGNCC	2 cut(s)	961, 962
SchI	GAGTC	3 cut(s)	14, 196, 448
ScrFI	CCNGG	3 cut(s)	494, 529, 857
SduI	GDGCHC	3 cut(s)	430, 536, 965
SfaNI	GCATC	4 cut(s)	430, 664, 688, 889
SfcI	CTRYAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	2 cut(s)	462, 720
SmlI	CTYRAG	2 cut(s)	374, 903
SmoI	CTYRAG	2 cut(s)	374, 903
Sse9I	AATT	7 cut(s)	154, 343, 348, 782, 820, 930, 1055
SsiI	CCGC	2 cut(s)	184, 633
SspMI	CTAG	4 cut(s)	297, 308, 579, 926
SstI	GAGCTC	1 cut(s)	430
StyD4I	CCNGG	3 cut(s)	492, 527, 855
StyI	CCWWGG	2 cut(s)	382, 690
TaaI	ACNGT	2 cut(s)	75, 607
TaqI	TCGA	2 cut(s)	218, 696
TasI	AATT	7 cut(s)	154, 343, 348, 782, 820, 930, 1055
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	2 cut(s)	760, 922
Tru1I	TTAA	2 cut(s)	375, 1058
Tru9I	TTAA	2 cut(s)	375, 1058
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	4 cut(s)	52, 55, 167, 267
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	108, 126, 327, 862
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	612
Vha464I	CTTAAG	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	1058
XapI	RAATTY	1 cut(s)	782
XceI	RCATGY	1 cut(s)	725
XspI	CTAG	4 cut(s)	297, 308, 579, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.