Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Reverse (-)

2684351 .. 2686070

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1021400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGAGAAGGGCTCATCACTTCCAGGGTAAATAATAATTTTCAAAGCTCAAGGGTCAGAAATTCTTGCTATTGTGTATCTAAATATATAACTGTTGATGCGGAGAGATCATTTCATCAACATGCTCTTGCTATTTTAGACAAGCTACATTCTGAGATGATTCTGGAGAAGCCACCAAATGAATTCTCATCGCAATCGGTGGAAGTGCATCATGATACTATTTCAAATATATCTGATGATCATGGACAACTTAACCAAGATGGCACTTTCTTCATTGCAAGAGCTATTCACCCGTTTGAGGCTCAAGCGGATGGAGAGTTGAATCTGTCCGTTGATGATTATGTTGTAGTTCGTCAGGTCGGCTCTAATGGATGGTCTGAAGGAGAAAGCAACGGCAAGGCCGGATGGTTTCCATCTGCATATATAGAGAGGCAGGAGAAAGCGCCATCCGGCAAGTTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

155

Amino Acids

17.27

Weight (kDa)

5.42

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_2	PF07653	93 - 143	2.8e-07	Variant SH3 domain
SH3_1	PF00018	94 - 139	2.5e-08	SH3 domain
SH3_9	PF14604	95 - 143	3e-11	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	101, 308
AcsI	RAATTY	2 cut(s)	61, 182
AcuI	CTGAAG	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	44, 225, 322
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	48, 145, 284
AluI	AGCT	3 cut(s)	48, 145, 284
AoxI	GGCC	1 cut(s)	399
ApoI	RAATTY	2 cut(s)	61, 182
AspLEI	GCGC	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	15
BccI	CCATC	6 cut(s)	254, 305, 366, 399, 421, 454
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	25
BclI	TGATCA	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	88, 217
BplI	GAGNNNNNCTC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	2 cut(s)	34, 288
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	4 cut(s)	316, 377, 410, 446
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	402, 450
BslI	CCNNNNNNNGG	1 cut(s)	298
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	107, 238
BspACI	CCGC	2 cut(s)	101, 308
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	107, 238
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	4 cut(s)	316, 377, 410, 446
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	2 cut(s)	110, 241
BstMBI	GATC	2 cut(s)	107, 238
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	4 cut(s)	316, 377, 410, 446
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	445
CviAII	CATG	3 cut(s)	122, 212, 242
CviJI	RGCY	8 cut(s)	13, 48, 145, 172, 284, 302, 363, 401
CviKI_1	RGCY	8 cut(s)	13, 48, 145, 172, 284, 302, 363, 401
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	109, 240
DpnII	GATC	2 cut(s)	107, 238
Eco24I	GRGCYC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	3 cut(s)	125, 215, 245
FatI	CATG	3 cut(s)	121, 211, 241
FbaI	TGATCA	1 cut(s)	238
FokI	GGATG	4 cut(s)	323, 384, 417, 433
FriOI	GRGCYC	1 cut(s)	15
GlaI	GCGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	2 cut(s)	402, 450
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	3 cut(s)	125, 215, 245
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HinfI	GANTC	2 cut(s)	160, 322
HpaII	CCGG	2 cut(s)	402, 450
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	4 cut(s)	59, 154, 235, 379
Hpy188III	TCNNGA	2 cut(s)	164, 212
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	208, 278, 419
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	125, 215, 245
HspAI	GCGC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	107, 238
LpnPI	CCDG	6 cut(s)	10, 37, 149, 341, 415, 419
LweI	GCATC	2 cut(s)	88, 217
MalI	GATC	2 cut(s)	109, 240
MboI	GATC	2 cut(s)	107, 238
MboII	GAAGA	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	37, 61, 182
MnlI	CCTC	2 cut(s)	292, 423
MseI	TTAA	2 cut(s)	252, 458
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	2 cut(s)	402, 450
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	107, 238
NlaIII	CATG	3 cut(s)	125, 215, 245
NspI	RCATGY	1 cut(s)	125
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	160, 322
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	252, 458
Sau3AI	GATC	2 cut(s)	107, 238
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	4 cut(s)	50, 147, 286, 360
SfaNI	GCATC	2 cut(s)	88, 217
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	49, 303
SmoI	CTYRAG	2 cut(s)	49, 303
Sse9I	AATT	3 cut(s)	37, 61, 182
SsiI	CCGC	2 cut(s)	101, 308
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	3 cut(s)	37, 61, 182
TfiI	GAWTC	2 cut(s)	160, 322
Tru1I	TTAA	2 cut(s)	252, 458
Tru9I	TTAA	2 cut(s)	252, 458
TspDTI	ATGAA	3 cut(s)	104, 195, 262
TspGWI	ACGGA	1 cut(s)	319
XapI	RAATTY	2 cut(s)	61, 182
XceI	RCATGY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.