Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002308.1

Orthogroup ID

OG0004165

Physical Location & Seq

Genomic Coordinates Forward (+)

219839 .. 227193

Gene Structure 7355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002308.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atggaggagattcatctgtggaagctggagacgacgtcggcagctgcgggggcaaagaagaggaggttcaccttcggatttagtggcggagctaaacgagcgttgcagctggtagatgaggaggctgtggcagtaacgtcggagggggatgatccgaccatggtcttgctgtttatggagtccatacggaagcaagcctgcaagctcagggagcaagtcgctaagcaacagcaggctgtattgaaacgattgggaagtttaagtaatgaagctgttatggttgatgaagctgaaattctgtgccatcaacaacttcatgatttatacacttctacgagagcagcgaagcattttcagcggagtattgttcgcggagttgaagcttttatttccatcagcttaaaacaaatggaaatagtaagaaagttggctgaagattgctgcaaatatggagctgaaaatcaaaacactagtacccctctagttagagcttcaacttactttggtacttcacatgattcaattgaagaagagagagagactttccttaggatcctaggtgagcaggtttatgaacctttacgggcacaactaactgggtctcctttggaggatgctcgtcacttgactcatcgttatgataaactgcgtcaggaggtcgaagcccaggtggctgaagtattgaggcgtcgattgaaatccaaggcttctggatcttctgagagttccttgaaacttcaaaatacagaagcaagattgacagagcttaaatcccctgcagtggcacttggccgagaagcgacttctgcaatgttgtcagttgaggctcagcagcaacagatgactttccagaagcttcttactatggttgatgctgaaagatcttatcatcaacatgcgcttgctattctagagaagctacattctgagatgattctggagaagctaccacaagaattttcattagaatcagagacagtgcatccaaatgctagttcaaagagatccgatgatcatgaacaacttactcaagatggcaattttttcattgcaagagctatacacccttttgatgctcaagcagatggagagttgaatctatcaattgatgattatgttgtggttcgtgaggtgggccctaatggatggtctgaaggggaatgcaagggcaaggccgggtggtttccatctgcatatatagagaggcacgaaaaagcaccagtgagcaaattattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

412

Amino Acids

46.31

Weight (kDa)

5.93

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31440
fragaria_vesca	FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360 FvH4_5g24360
malus_domestica	MD06G1021400.v1.1 MD06G1021700.v1.1
prunus_persica	Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1 Prupe.5G017200_v2.0.a1
pyrus_communis	pycom06g01560
rosa_chinensis	RchiOBHm_Chr7g0214611 RchiOBHm_Chr7g0214731
rosa_laevigata	RLG00000002726
rosa_multiflora	Rmu_sc0002308.1_g000048 Rmu_sc0003490.1_g000034
rosa_roxburghii	Rroxscaffold_3G00245130 Rroxscaffold_3G00245180
rosa_samantha	Rh7AG283500 Rh7BG274200 Rh7CG302800 Rh7DG286900
rosa_wichuraiana	Rw7G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	556
AccII	CGCG	1 cut(s)	372
AciI	CCGC	4 cut(s)	47, 87, 358, 372
AclWI	GGATC	5 cut(s)	146, 547, 560, 721, 999
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	2 cut(s)	294, 956
AcuI	CTGAAG	3 cut(s)	453, 696, 1173
AcyI	GRCGYC	2 cut(s)	35, 688
AfaI	GTAC	2 cut(s)	475, 508
AfiI	CCNNNNNNNGG	1 cut(s)	781
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	666
AjuI	GAANNNNNNNTTGG	2 cut(s)	979, 1011
Alw26I	GTCTC	4 cut(s)	23, 533, 606, 968
AlwI	GGATC	5 cut(s)	146, 547, 560, 721, 999
AoxI	GGCC	3 cut(s)	790, 1135, 1173
ApaI	GGGCCC	1 cut(s)	1139
ApeKI	GCWGC	6 cut(s)	41, 44, 106, 341, 441, 832
ApoI	RAATTY	2 cut(s)	294, 956
AspA2I	CCTAGG	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	2 cut(s)	1135, 1136
AsuC2I	CCSGG	1 cut(s)	1177
AsuHPI	GGTGA	2 cut(s)	61, 572
AvrII	CCTAGG	1 cut(s)	556
AxyI	CCTNAGG	1 cut(s)	548
BaeGI	GKGCMC	2 cut(s)	589, 1139
BaeI	ACNNNNGTAYC	2 cut(s)	457, 490
BamHI	GGATCC	1 cut(s)	552
BanII	GRGCYC	1 cut(s)	1139
BbvI	GCAGC	6 cut(s)	31, 53, 118, 353, 428, 844
BccI	CCATC	6 cut(s)	312, 401, 1028, 1079, 1140, 1195
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	1 cut(s)	668
BclI	TGATCA	1 cut(s)	1012
BcnI	CCSGG	1 cut(s)	1177
BcoDI	GTCTC	4 cut(s)	23, 533, 606, 968
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	5 cut(s)	471, 482, 557, 911, 993
BfmI	CTRYAG	1 cut(s)	777
BfuAI	ACCTGC	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	671
BglII	AGATCT	1 cut(s)	881
BisI	GCNGC	6 cut(s)	42, 45, 107, 342, 442, 833
BlnI	CCTAGG	1 cut(s)	556
BlpI	GCTNAGC	2 cut(s)	222, 828
BlsI	GCNGC	6 cut(s)	43, 46, 108, 343, 443, 834
Bme1390I	CCNGG	2 cut(s)	668, 1177
BmgT120I	GGNCC	2 cut(s)	1135, 1136
BmiI	GGNNCC	2 cut(s)	554, 1137
BmrFI	CCNGG	2 cut(s)	668, 1177
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	4 cut(s)	604, 862, 991, 1063
BmuI	ACTGGG	1 cut(s)	606
BoxI	GACNNNNGTC	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	47, 959
Bpu10I	CCTNAGC	1 cut(s)	206
Bpu1102I	GCTNAGC	2 cut(s)	222, 828
BpuEI	CTTGAG	2 cut(s)	1014, 1062
BpuMI	CCSGG	1 cut(s)	1177
BsaBI	GATNNNNATC	1 cut(s)	697
BsaHI	GRCGYC	2 cut(s)	35, 688
BsaI	GGTCTC	1 cut(s)	606
BsaJI	CCNNGG	4 cut(s)	159, 556, 666, 702
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 586, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse1I	ACTGG	2 cut(s)	601, 1220
Bse21I	CCTNAGG	1 cut(s)	548
Bse3DI	GCAATG	2 cut(s)	816, 1047
Bse8I	GATNNNNATC	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	4 cut(s)	159, 556, 666, 702
BseGI	GGATG	4 cut(s)	154, 619, 982, 1151
BseJI	GATNNNNATC	1 cut(s)	697
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMI	GCAATG	2 cut(s)	816, 1047
BseMII	CTCAG	4 cut(s)	220, 711, 842, 918
BseNI	ACTGG	2 cut(s)	601, 1220
BseRI	GAGGAG	3 cut(s)	20, 76, 134
BseSI	GKGCMC	2 cut(s)	589, 1139
BseXI	GCAGC	6 cut(s)	31, 53, 118, 353, 428, 844
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	3 cut(s)	792, 1137, 1175
BsiSI	CCGG	1 cut(s)	1176
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	4 cut(s)	23, 533, 606, 968
BsmBI	CGTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	1166
BsnI	GGCC	3 cut(s)	792, 1137, 1175
Bso31I	GGTCTC	1 cut(s)	606
Bsp120I	GGGCCC	1 cut(s)	1135
Bsp1286I	GDGCHC	2 cut(s)	589, 1139
Bsp143I	GATC	6 cut(s)	151, 552, 713, 881, 1004, 1012
Bsp1720I	GCTNAGC	2 cut(s)	222, 828
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	4 cut(s)	47, 87, 358, 372
BspANI	GGCC	3 cut(s)	792, 1137, 1175
BspCNI	CTCAG	4 cut(s)	219, 712, 841, 919
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	2 cut(s)	316, 1015
BspLI	GGNNCC	2 cut(s)	554, 1137
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	5 cut(s)	146, 547, 560, 721, 999
BspTNI	GGTCTC	1 cut(s)	606
BsrDI	GCAATG	2 cut(s)	816, 1047
BsrI	ACTGG	2 cut(s)	601, 1220
BssECI	CCNNGG	4 cut(s)	159, 556, 666, 702
BssMI	GATC	6 cut(s)	151, 552, 713, 881, 1004, 1012
BssNI	GRCGYC	2 cut(s)	35, 688
BssT1I	CCWWGG	3 cut(s)	159, 556, 702
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	1 cut(s)	979
Bst6I	CTCTTC	2 cut(s)	53, 525
BstACI	GRCGYC	2 cut(s)	35, 688
BstC8I	GCNNGC	5 cut(s)	195, 199, 203, 234, 903
BstDEI	CTNAG	6 cut(s)	206, 222, 548, 720, 828, 927
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	4 cut(s)	154, 619, 982, 1151
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	6 cut(s)	154, 555, 716, 884, 1007, 1015
BstMAI	GTCTC	4 cut(s)	23, 533, 606, 968
BstMBI	GATC	6 cut(s)	151, 552, 713, 881, 1004, 1012
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 98, 211, 355, 671, 806
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	1 cut(s)	899
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	666, 1175
BstSFI	CTRYAG	1 cut(s)	777
BstSLI	GKGCMC	2 cut(s)	589, 1139
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	6 cut(s)	31, 53, 118, 353, 428, 844
BstX2I	RGATCY	4 cut(s)	552, 713, 881, 1004
BstYI	RGATCY	4 cut(s)	552, 713, 881, 1004
Bsu36I	CCTNAGG	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	792, 1137, 1175
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	154, 619, 982, 1151
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	3 cut(s)	786, 984, 1227
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	5 cut(s)	195, 199, 203, 234, 903
CciI	TCATGA	2 cut(s)	316, 1015
CfoI	GCGC	1 cut(s)	901
Cfr13I	GGNCC	2 cut(s)	1135, 1136
CseI	GACGC	2 cut(s)	638, 677
Csp6I	GTAC	2 cut(s)	474, 507
CviAII	CATG	5 cut(s)	160, 317, 515, 896, 1016
CviQI	GTAC	2 cut(s)	474, 507
DdeI	CTNAG	6 cut(s)	206, 222, 548, 720, 828, 927
DpnI	GATC	6 cut(s)	153, 554, 715, 883, 1006, 1014
DpnII	GATC	6 cut(s)	151, 552, 713, 881, 1004, 1012
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	2 cut(s)	53, 525
EarI	CTCTTC	2 cut(s)	53, 525
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	3 cut(s)	159, 556, 702
Eco24I	GRGCYC	1 cut(s)	1139
Eco31I	GGTCTC	1 cut(s)	606
Eco57I	CTGAAG	3 cut(s)	453, 696, 1173
Eco81I	CCTNAGG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	1136
EcoRII	CCWGG	1 cut(s)	666
EcoT14I	CCWWGG	3 cut(s)	159, 556, 702
EcoT38I	GRGCYC	1 cut(s)	1139
ErhI	CCWWGG	3 cut(s)	159, 556, 702
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	5 cut(s)	163, 320, 518, 899, 1019
FatI	CATG	5 cut(s)	159, 316, 514, 895, 1015
FauI	CCCGC	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	1012
Fnu4HI	GCNGC	6 cut(s)	42, 45, 107, 342, 442, 833
FokI	GGATG	4 cut(s)	161, 626, 969, 1158
FriOI	GRGCYC	1 cut(s)	1139
Fsp4HI	GCNGC	6 cut(s)	42, 45, 107, 342, 442, 833
FspBI	CTAG	5 cut(s)	471, 482, 557, 911, 993
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	6 cut(s)	42, 45, 107, 342, 442, 833
GsuI	CTGGAG	2 cut(s)	47, 959
HaeIII	GGCC	3 cut(s)	792, 1137, 1175
HapII	CCGG	1 cut(s)	1176
HgaI	GACGC	2 cut(s)	638, 677
HhaI	GCGC	1 cut(s)	901
Hin1I	GRCGYC	2 cut(s)	35, 688
Hin1II	CATG	5 cut(s)	163, 320, 518, 899, 1019
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HindIII	AAGCTT	2 cut(s)	381, 854
HinfI	GANTC	7 cut(s)	10, 179, 518, 628, 934, 968, 1096
HpaII	CCGG	1 cut(s)	1176
HphI	GGTGA	2 cut(s)	61, 572
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	8 cut(s)	77, 142, 156, 721, 928, 973, 1009, 1153
Hpy188III	TCNNGA	9 cut(s)	317, 653, 711, 850, 911, 938, 1016, 1031, 1127
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	4 cut(s)	37, 40, 142, 693
HpyAV	CCTTC	2 cut(s)	82, 1148
HpyCH4III	ACNGT	1 cut(s)	979
HpyCH4IV	ACGT	2 cut(s)	35, 137
HpyCH4V	TGCA	9 cut(s)	106, 201, 444, 779, 809, 982, 1052, 1164, 1193
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 98, 211, 355, 671, 806
HpyF3I	CTNAG	6 cut(s)	206, 222, 548, 720, 828, 927
HpySE526I	ACGT	2 cut(s)	35, 137
Hsp92I	GRCGYC	2 cut(s)	35, 688
Hsp92II	CATG	5 cut(s)	163, 320, 518, 899, 1019
HspAI	GCGC	1 cut(s)	899
Ksp22I	TGATCA	1 cut(s)	1012
Kzo9I	GATC	6 cut(s)	151, 552, 713, 881, 1004, 1012
LmnI	GCTCC	3 cut(s)	89, 211, 452
Lsp1109I	GCAGC	6 cut(s)	31, 53, 118, 353, 428, 844
LweI	GCATC	4 cut(s)	604, 862, 991, 1063
MaeI	CTAG	5 cut(s)	471, 482, 557, 911, 993
MaeII	ACGT	2 cut(s)	35, 137
MaeIII	GTNAC	2 cut(s)	133, 620
MalI	GATC	6 cut(s)	153, 554, 715, 883, 1006, 1014
MboI	GATC	6 cut(s)	151, 552, 713, 881, 1004, 1012
MboII	GAAGA	5 cut(s)	70, 446, 539, 542, 708
MfeI	CAATTG	2 cut(s)	522, 1104
MflI	RGATCY	4 cut(s)	552, 713, 881, 1004
MhlI	GDGCHC	2 cut(s)	589, 1139
MluCI	AATT	6 cut(s)	294, 522, 956, 1039, 1104, 1229
MlyI	GAGTC	2 cut(s)	188, 622
MmeI	TCCRAC	2 cut(s)	120, 179
MseI	TTAA	3 cut(s)	260, 401, 768
MslI	CAYNNNNRTG	3 cut(s)	636, 894, 987
MspA1I	CMGCKG	3 cut(s)	44, 109, 358
MspI	CCGG	1 cut(s)	1176
MspR9I	CCNGG	2 cut(s)	668, 1177
MunI	CAATTG	2 cut(s)	522, 1104
Mva1269I	GAATGC	1 cut(s)	1166
MvaI	CCWGG	1 cut(s)	668
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	6 cut(s)	50, 98, 211, 355, 671, 806
NciI	CCSGG	1 cut(s)	1177
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	6 cut(s)	151, 552, 713, 881, 1004, 1012
NlaIII	CATG	5 cut(s)	163, 320, 518, 899, 1019
NlaIV	GGNNCC	2 cut(s)	554, 1137
NmeAIII	GCCGAG	1 cut(s)	818
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	1 cut(s)	899
PagI	TCATGA	2 cut(s)	316, 1015
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PctI	GAATGC	1 cut(s)	1166
PfeI	GAWTC	5 cut(s)	10, 518, 934, 968, 1096
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	6 cut(s)	43, 46, 108, 343, 443, 834
PleI	GAGTC	2 cut(s)	187, 622
PpsI	GAGTC	2 cut(s)	187, 622
PshAI	GACNNNNGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	2 cut(s)	554, 1137
PspOMI	GGGCCC	1 cut(s)	1135
PspPI	GGNCC	2 cut(s)	1135, 1136
PstI	CTGCAG	1 cut(s)	781
PsuI	RGATCY	4 cut(s)	552, 713, 881, 1004
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	44, 109
RsaI	GTAC	2 cut(s)	475, 508
RsaNI	GTAC	2 cut(s)	474, 507
RseI	CAYNNNNRTG	3 cut(s)	636, 894, 987
SaqAI	TTAA	3 cut(s)	260, 401, 768
SatI	GCNGC	6 cut(s)	42, 45, 107, 342, 442, 833
Sau3AI	GATC	6 cut(s)	151, 552, 713, 881, 1004, 1012
Sau96I	GGNCC	2 cut(s)	1135, 1136
SchI	GAGTC	2 cut(s)	188, 622
ScrFI	CCNGG	2 cut(s)	668, 1177
SduI	GDGCHC	2 cut(s)	589, 1139
SfaNI	GCATC	4 cut(s)	604, 862, 991, 1063
SfcI	CTRYAG	1 cut(s)	777
SmiMI	CAYNNNNRTG	3 cut(s)	636, 894, 987
SmlI	CTYRAG	2 cut(s)	1029, 1077
SmoI	CTYRAG	2 cut(s)	1029, 1077
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	6 cut(s)	294, 522, 956, 1039, 1104, 1229
SsiI	CCGC	4 cut(s)	47, 87, 358, 372
SspMI	CTAG	5 cut(s)	471, 482, 557, 911, 993
StyD4I	CCNGG	2 cut(s)	666, 1175
StyI	CCWWGG	3 cut(s)	159, 556, 702
TaaI	ACNGT	1 cut(s)	979
TaiI	ACGT	2 cut(s)	38, 140
TaqI	TCGA	2 cut(s)	660, 691
TasI	AATT	6 cut(s)	294, 522, 956, 1039, 1104, 1229
TfiI	GAWTC	5 cut(s)	10, 518, 934, 968, 1096
Tru1I	TTAA	3 cut(s)	260, 401, 768
Tru9I	TTAA	3 cut(s)	260, 401, 768
TscAI	CASTG	3 cut(s)	786, 984, 1227
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	6 cut(s)	41, 44, 106, 341, 441, 832
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	7 cut(s)	282, 300, 305, 588, 951, 1032, 1036
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	3 cut(s)	786, 984, 1227
Tth111I	GACNNNGTC	1 cut(s)	34
XapI	RAATTY	2 cut(s)	294, 956
XbaI	TCTAGA	1 cut(s)	910
XceI	RCATGY	1 cut(s)	899
XmaJI	CCTAGG	1 cut(s)	556
XspI	CTAG	5 cut(s)	471, 482, 557, 911, 993
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.