AT1G31870

Pre-mRNA-splicing factor of RES complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010092
Physical Location & Seq
Forward (+)
11436719 .. 11440275
3557 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31870.2

Sequence Viewer

Length: 1686 bp
ATGGCAGGAAACCAATCTTTAAAAGATTACTTGAAGAAGTATGAAAGTAGTGATGTTGTAGAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGCCATCTAAACCTGAACCAAGAGGTGTTTTAGTTGTCGACGAAGATCCAGTTTGGCAAAAGCAGGTTGATCCTGAAGAGGACGAAAACGAAGATGATTCAGCAGAGGAAACACCTCTGGTTGATGAAGACATTGAAGTTAAGCGAATGAGGAGGTTGGAGGAAATTAAGGCAAGGCGTGCTCATAATGCCATTGCTGAGGATGGAAGTGGGTGGGTAACGTTACCTCTAAACCGTGAAGACACACAATCTAATATTTCTCCTCCACGTAGACAAAGGACTCGTAATGACTCGCCCTCTCCTGAGCCTGGGCCTAGACGGTCGGTTGCGGATAGAGTTGATACAGATATGTCACCACCACGACGGAGAAAACGTCACAATTCGCCTTCACCTGAACCTAACAGAAAACATACCAAGCCTGTTAGTTTGGATTCAGATATGTCACCACCTCGCAAAAGAAAAGCCAGGAATGATTCGCCTTCACCAGAACCTGAAGCTAAATATCTGAGTGAAGATCTATCTCCTCCTCGTAGGAGACATGTTCATTCTCCATCGCGTGAATCTAGCAGAAAGCGTTCAGATTCTGTTGAGTTGGACGATGATTTATCTCCGCCTCGCAGGAAAAGAGATTTACATGGTTCACCTGTCTCAGATGTAAAAAAGAAGAGCAATGATCTATCTCCTCCACGGAGAAGAAGATATCATTCTCCATCACCTGAACCAGCTAGAAGGTCTTCAAAATCTTTTGGCTCGAATGCTGATTTATCTCCACCCGGCCGGAATATAAATATGAAGGATTCTCAAGACTCAGATCTTTCGCCTCAAAGAAAAGCCGCAGATTTGCGACGTTCTTCTGAAAATGTGTCCAGGAGTTCCAATTTTGATAGCTCTCCCCCAAGGAGACCACGCAGAGATTCATCACCTCCTCAAATAAGCAAGGAGCAACGAAAGACCGGATTGATTAGTGGCAAAGACATTGGAAGTGAATATCGAAAGAAAAAGGAGGATGAAAAATTGAGGTTTAAAAATATGGATTCCGAGCTAACTGGTCAAAACGCAGAAGCAGTGTTCCGTGACAAGATCACAGGGAAGCGTATATCAAAGGAGGAATATCTTAAATCGAAGCAAAAAAAAGTGATAGAGAAGCCAAAGGAGATAAAACTGGAATGGGGCAAAGGTTTAGCTCAGAAGCGTGAAGCTGAAGCTAGACTACAAGAACTTGAGCTTGAGAAGGATAAGCCATTTGCTCGGACAAGGGATGATCCGGAGCTTGATCAAATGATGAAGGAAAGAGTTAGATTTGGAGATCCAATGGCTCATTTGGTCAAGAAAAGAAAGTACGAGACAACTCTTGTGGATCTAGGAGACGATGAGGAGATGAAAAAATCTGGGTTCATTATACCACAAAGTGTGCCTAAACATAGTTGGTTGACGAGACGGTTGGAAGCTGCATCAAACCGGTATGGGATTAAACCGGGTAGACACTGGGATGGGGTCGACCGTAGTAACGGAACTGAGAAGGATCTGATTAAGAAGACCAATGAGAGGAAAGCAACGGAAATAGAGGCTTATCTCTGGTCCGTTGCAGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bud13

Protein Analysis

561

Amino Acids

64.66

Weight (kDa)

9.73

Isoelectric Point (pI)

84.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bud13 PF09736 384 - 544 1.4e-38 Pre-mRNA-splicing factor of RES complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 145
AccI GTMKAC 4 cut(s) 129, 361, 1570, 1587
AccII CGCG 1 cut(s) 646
AccIII TCCGGA 1 cut(s) 1354
AciI CCGC 3 cut(s) 419, 701, 924
AclI AACGTT 1 cut(s) 311
AclWI GGATC 6 cut(s) 131, 155, 1346, 1391, 1455, 1620
AcoI YGGCCR 1 cut(s) 865
AcuI CTGAAG 3 cut(s) 186, 603, 1311
AdeI CACNNNGTG 1 cut(s) 1499
AfaI GTAC 1 cut(s) 1430
AfiI CCNNNNNNNGG 2 cut(s) 398, 1635
AflIII ACRYGT 2 cut(s) 628, 1680
AgeI ACCGGT 1 cut(s) 1548
AgsI TTSAA 3 cut(s) 34, 227, 828
AjnI CCWGG 3 cut(s) 397, 554, 956
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 6 cut(s) 619, 742, 985, 1427, 1449, 1519
AlwI GGATC 6 cut(s) 131, 155, 1346, 1391, 1455, 1620
AlwNI CAGNNNCTG 2 cut(s) 581, 674
Aor13HI TCCGGA 1 cut(s) 1354
AoxI GGCC 2 cut(s) 401, 865
ApeKI GCWGC 1 cut(s) 1538
AsiGI ACCGGT 1 cut(s) 1548
Asp700I GAANNNNTTC 2 cut(s) 664, 823
AspS9I GGNCC 2 cut(s) 401, 1668
AsuC2I CCSGG 2 cut(s) 864, 1566
AsuHPI GGTGA 7 cut(s) 435, 471, 525, 564, 723, 795, 1002
AvaII GGWCC 1 cut(s) 1668
BarI GAAGNNNNNNTAC 2 cut(s) 1284, 1316
BbsI GAAGAC 4 cut(s) 225, 336, 816, 1631
Bbv12I GWGCWC 1 cut(s) 274
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 1525
BccI CCATC 5 cut(s) 103, 287, 649, 808, 1574
BciT130I CCWGG 3 cut(s) 399, 556, 958
BclI TGATCA 1 cut(s) 1363
BcnI CCSGG 2 cut(s) 864, 1566
BcoDI GTCTC 6 cut(s) 619, 742, 985, 1427, 1449, 1519
BfaI CTAG 5 cut(s) 405, 654, 816, 1296, 1451
BfuAI ACCTGC 1 cut(s) 145
BglII AGATCT 2 cut(s) 604, 901
BisI GCNGC 2 cut(s) 924, 1539
BlsI GCNGC 2 cut(s) 925, 1540
Bme1390I CCNGG 5 cut(s) 399, 556, 864, 958, 1566
Bme18I GGWCC 1 cut(s) 1668
BmgT120I GGNCC 2 cut(s) 401, 1668
BmrFI CCNGG 5 cut(s) 399, 556, 864, 958, 1566
BmrI ACTGGG 1 cut(s) 1585
BmsI GCATC 1 cut(s) 1550
BmuI ACTGGG 1 cut(s) 1585
BpiI GAAGAC 4 cut(s) 225, 336, 816, 1631
Bpu10I CCTNAGC 2 cut(s) 288, 393
BpuEI CTTGAG 3 cut(s) 876, 1331, 1337
BpuMI CCSGG 2 cut(s) 864, 1566
BsaAI YACGTR 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 985
BsaJI CCNNGG 3 cut(s) 398, 776, 986
BsaWI WCCGGW 3 cut(s) 1043, 1354, 1548
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 1635
Bse118I RCCGGY 1 cut(s) 1548
Bse1I ACTGG 4 cut(s) 140, 1141, 1257, 1580
Bse3DI GCAATG 2 cut(s) 282, 766
BseAI TCCGGA 1 cut(s) 1354
BseBI CCWGG 3 cut(s) 399, 556, 958
BseDI CCNNGG 3 cut(s) 398, 776, 986
BseGI GGATG 4 cut(s) 298, 1102, 1354, 1585
BseLI CCNNNNNNNGG 2 cut(s) 398, 1635
BseMI GCAATG 2 cut(s) 282, 766
BseMII CTCAG 7 cut(s) 279, 384, 587, 753, 912, 1289, 1596
BseNI ACTGG 4 cut(s) 140, 1141, 1257, 1580
BseRI GAGGAG 7 cut(s) 256, 342, 603, 606, 762, 1005, 1478
BseX3I CGGCCG 1 cut(s) 865
BseXI GCAGC 1 cut(s) 1525
Bsh1236I CGCG 1 cut(s) 646
Bsh1285I CGRYCG 3 cut(s) 413, 868, 1591
BshFI GGCC 2 cut(s) 403, 867
BshTI ACCGGT 1 cut(s) 1548
BsiEI CGRYCG 3 cut(s) 413, 868, 1591
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 6 cut(s) 864, 868, 1044, 1355, 1549, 1565
BslI CCNNNNNNNGG 2 cut(s) 398, 1635
BsmAI GTCTC 6 cut(s) 619, 742, 985, 1427, 1449, 1519
BsmBI CGTCTC 2 cut(s) 1449, 1519
BsmI GAATGC 1 cut(s) 850
BsnI GGCC 2 cut(s) 403, 867
Bso31I GGTCTC 1 cut(s) 985
Bsp1286I GDGCHC 1 cut(s) 274
Bsp13I TCCGGA 1 cut(s) 1354
BspACI CCGC 3 cut(s) 419, 701, 924
BspANI GGCC 2 cut(s) 403, 867
BspCNI CTCAG 7 cut(s) 280, 385, 588, 752, 911, 1288, 1597
BspEI TCCGGA 1 cut(s) 1354
BspFNI CGCG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 6 cut(s) 131, 155, 1346, 1391, 1455, 1620
BspQI GCTCTTC 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 985
BsrDI GCAATG 2 cut(s) 282, 766
BsrFI RCCGGY 1 cut(s) 1548
BsrI ACTGG 4 cut(s) 140, 1141, 1257, 1580
BssAI RCCGGY 1 cut(s) 1548
BssECI CCNNGG 3 cut(s) 398, 776, 986
BssT1I CCWWGG 1 cut(s) 986
Bst2UI CCWGG 3 cut(s) 399, 556, 958
Bst4CI ACNGT 4 cut(s) 326, 411, 1530, 1592
Bst6I CTCTTC 2 cut(s) 162, 749
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 7 cut(s) 288, 393, 596, 739, 898, 1275, 1605
BstDSI CCRYGG 1 cut(s) 776
BstF5I GGATG 4 cut(s) 298, 1102, 1354, 1585
BstFNI CGCG 1 cut(s) 646
BstMAI GTCTC 6 cut(s) 619, 742, 985, 1427, 1449, 1519
BstMCI CGRYCG 3 cut(s) 413, 868, 1591
BstMWI GCNNNNNNNGC 3 cut(s) 91, 269, 278
BstNI CCWGG 3 cut(s) 399, 556, 958
BstNSI RCATGY 2 cut(s) 632, 1684
BstSCI CCNGG 5 cut(s) 397, 554, 862, 956, 1564
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 1 cut(s) 1525
BstV2I GAAGAC 4 cut(s) 225, 336, 816, 1631
BstX2I RGATCY 6 cut(s) 136, 604, 901, 1396, 1447, 1612
BstYI RGATCY 6 cut(s) 136, 604, 901, 1396, 1447, 1612
BstZI CGGCCG 1 cut(s) 865
BsuRI GGCC 2 cut(s) 403, 867
BtgI CCRYGG 1 cut(s) 776
BtgZI GCGATG 1 cut(s) 627
BtsCI GGATG 4 cut(s) 298, 1102, 1354, 1585
BtsI GCAGTG 1 cut(s) 1161
BtsIMutI CAGTG 2 cut(s) 1161, 1573
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 2 cut(s) 581, 674
Cfr10I RCCGGY 1 cut(s) 1548
Cfr13I GGNCC 2 cut(s) 401, 1668
Csp6I GTAC 1 cut(s) 1429
CspAI ACCGGT 1 cut(s) 1548
CspCI CAANNNNNGTGG 2 cut(s) 1425, 1460
CviAII CATG 3 cut(s) 629, 725, 1681
CviQI GTAC 1 cut(s) 1429
DdeI CTNAG 7 cut(s) 288, 393, 596, 739, 898, 1275, 1605
DraI TTTAAA 2 cut(s) 21, 1114
DraIII CACNNNGTG 1 cut(s) 1499
EaeI YGGCCR 1 cut(s) 865
EagI CGGCCG 1 cut(s) 865
Eam1104I CTCTTC 2 cut(s) 162, 749
EarI CTCTTC 2 cut(s) 162, 749
EciI GGCGGA 1 cut(s) 690
EclXI CGGCCG 1 cut(s) 865
Eco130I CCWWGG 1 cut(s) 986
Eco31I GGTCTC 1 cut(s) 985
Eco32I GATATC 1 cut(s) 791
Eco47I GGWCC 1 cut(s) 1668
Eco52I CGGCCG 1 cut(s) 865
Eco57I CTGAAG 3 cut(s) 186, 603, 1311
EcoRII CCWGG 3 cut(s) 397, 554, 956
EcoRV GATATC 1 cut(s) 791
EcoT14I CCWWGG 1 cut(s) 986
ErhI CCWWGG 1 cut(s) 986
Esp3I CGTCTC 2 cut(s) 1449, 1519
FaeI CATG 3 cut(s) 632, 728, 1684
FatI CATG 3 cut(s) 628, 724, 1680
FbaI TGATCA 1 cut(s) 1363
FblI GTMKAC 4 cut(s) 129, 361, 1570, 1587
Fnu4HI GCNGC 2 cut(s) 924, 1539
FokI GGATG 4 cut(s) 305, 1109, 1361, 1592
Fsp4HI GCNGC 2 cut(s) 924, 1539
FspBI CTAG 5 cut(s) 405, 654, 816, 1296, 1451
GluI GCNGC 2 cut(s) 924, 1539
HaeIII GGCC 2 cut(s) 403, 867
HapII CCGG 6 cut(s) 864, 868, 1044, 1355, 1549, 1565
Hin1II CATG 3 cut(s) 632, 728, 1684
HincII GTYRAC 3 cut(s) 130, 1521, 1588
HindII GTYRAC 3 cut(s) 130, 1521, 1588
HpaII CCGG 6 cut(s) 864, 868, 1044, 1355, 1549, 1565
HphI GGTGA 7 cut(s) 435, 471, 525, 564, 723, 795, 1002
Hpy166II GTNNAC 6 cut(s) 130, 362, 731, 1521, 1571, 1588
Hpy188III TCNNGA 5 cut(s) 164, 392, 893, 1355, 1417
Hpy8I GTNNAC 6 cut(s) 130, 362, 731, 1521, 1571, 1588
Hpy99I CGWCG 3 cut(s) 134, 456, 939
HpyAV CCTTC 7 cut(s) 486, 579, 813, 877, 1315, 1369, 1603
HpyCH4III ACNGT 4 cut(s) 326, 411, 1530, 1592
HpyCH4IV ACGT 4 cut(s) 311, 358, 463, 937
HpyCH4V TGCA 2 cut(s) 1541, 1676
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 269, 278
HpyF3I CTNAG 7 cut(s) 288, 393, 596, 739, 898, 1275, 1605
HpySE526I ACGT 4 cut(s) 311, 358, 463, 937
Hsp92II CATG 3 cut(s) 632, 728, 1684
Kpn2I TCCGGA 1 cut(s) 1354
Ksp22I TGATCA 1 cut(s) 1363
LguI GCTCTTC 1 cut(s) 749
LmnI GCTCC 2 cut(s) 1030, 1357
Lsp1109I GCAGC 1 cut(s) 1525
LweI GCATC 1 cut(s) 1550
MaeI CTAG 5 cut(s) 405, 654, 816, 1296, 1451
MaeII ACGT 4 cut(s) 311, 358, 463, 937
MaeIII GTNAC 7 cut(s) 307, 312, 441, 464, 531, 1163, 1595
MflI RGATCY 6 cut(s) 136, 604, 901, 1396, 1447, 1612
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 4 cut(s) 255, 469, 967, 1103
MlyI GAGTC 3 cut(s) 364, 374, 890
MmeI TCCRAC 3 cut(s) 228, 663, 1512
MroI TCCGGA 1 cut(s) 1354
MroXI GAANNNNTTC 2 cut(s) 664, 823
MseI TTAA 7 cut(s) 20, 231, 258, 1113, 1206, 1560, 1620
MslI CAYNNNNRTG 1 cut(s) 1578
MspI CCGG 6 cut(s) 864, 868, 1044, 1355, 1549, 1565
MspR9I CCNGG 5 cut(s) 399, 556, 864, 958, 1566
Mva1269I GAATGC 1 cut(s) 850
MvaI CCWGG 3 cut(s) 399, 556, 958
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 3 cut(s) 91, 269, 278
NciI CCSGG 2 cut(s) 864, 1566
NlaIII CATG 3 cut(s) 632, 728, 1684
NmuCI GTSAC 4 cut(s) 441, 464, 531, 1163
NspI RCATGY 2 cut(s) 632, 1684
PciI ACATGT 2 cut(s) 628, 1680
PciSI GCTCTTC 1 cut(s) 749
PcsI WCGNNNNNNNCGW 1 cut(s) 460
PctI GAATGC 1 cut(s) 850
PdmI GAANNNNTTC 2 cut(s) 664, 823
PfeI GAWTC 8 cut(s) 188, 521, 563, 650, 671, 887, 1004, 1124
PfoI TCCNGGA 1 cut(s) 956
PinAI ACCGGT 1 cut(s) 1548
PkrI GCNGC 2 cut(s) 925, 1540
PleI GAGTC 3 cut(s) 364, 374, 890
PpsI GAGTC 3 cut(s) 364, 374, 890
Ppu21I YACGTR 1 cut(s) 359
PscI ACATGT 2 cut(s) 628, 1680
Psp1406I AACGTT 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 397, 554, 956
PspGI CCWGG 3 cut(s) 397, 554, 956
PspPI GGNCC 2 cut(s) 401, 1668
PstNI CAGNNNCTG 2 cut(s) 581, 674
PsuI RGATCY 6 cut(s) 136, 604, 901, 1396, 1447, 1612
RsaI GTAC 1 cut(s) 1430
RsaNI GTAC 1 cut(s) 1429
RseI CAYNNNNRTG 1 cut(s) 1578
SalI GTCGAC 2 cut(s) 128, 1586
SapI GCTCTTC 1 cut(s) 749
SaqAI TTAA 7 cut(s) 20, 231, 258, 1113, 1206, 1560, 1620
SatI GCNGC 2 cut(s) 924, 1539
Sau96I GGNCC 2 cut(s) 401, 1668
SchI GAGTC 3 cut(s) 364, 374, 890
ScrFI CCNGG 5 cut(s) 399, 556, 864, 958, 1566
SduI GDGCHC 1 cut(s) 274
SfaNI GCATC 1 cut(s) 1550
SinI GGWCC 1 cut(s) 1668
SmiMI CAYNNNNRTG 1 cut(s) 1578
SmlI CTYRAG 3 cut(s) 891, 1310, 1316
SmoI CTYRAG 3 cut(s) 891, 1310, 1316
Sse9I AATT 4 cut(s) 255, 469, 967, 1103
SsiI CCGC 3 cut(s) 419, 701, 924
SspI AATATT 1 cut(s) 346
SspMI CTAG 5 cut(s) 405, 654, 816, 1296, 1451
StyD4I CCNGG 5 cut(s) 397, 554, 862, 956, 1564
StyI CCWWGG 1 cut(s) 986
TaaI ACNGT 4 cut(s) 326, 411, 1530, 1592
TaiI ACGT 4 cut(s) 314, 361, 466, 940
TaqI TCGA 5 cut(s) 129, 842, 1081, 1211, 1587
TasI AATT 4 cut(s) 255, 469, 967, 1103
TauI GCSGC 1 cut(s) 926
TfiI GAWTC 8 cut(s) 188, 521, 563, 650, 671, 887, 1004, 1124
Tru1I TTAA 7 cut(s) 20, 231, 258, 1113, 1206, 1560, 1620
Tru9I TTAA 7 cut(s) 20, 231, 258, 1113, 1206, 1560, 1620
TscAI CASTG 2 cut(s) 1161, 1580
TseFI GTSAC 4 cut(s) 441, 464, 531, 1163
TseI GCWGC 1 cut(s) 1538
Tsp45I GTSAC 4 cut(s) 441, 464, 531, 1163
TspDTI ATGAA 9 cut(s) 57, 231, 623, 896, 996, 1113, 1388, 1474, 1484
TspGWI ACGGA 6 cut(s) 469, 793, 1151, 1614, 1660, 1661
TspRI CASTG 2 cut(s) 1161, 1580
VpaK11BI GGWCC 1 cut(s) 1668
XceI RCATGY 2 cut(s) 632, 1684
XmiI GTMKAC 4 cut(s) 129, 361, 1570, 1587
XmnI GAANNNNTTC 2 cut(s) 664, 823
XspI CTAG 5 cut(s) 405, 654, 816, 1296, 1451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.