Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010092

Physical Location & Seq

Genomic Coordinates Reverse (-)

19084730 .. 19088629

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G202500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCGTCTTCGAGTAAATCACTGAAAGAGTATTTGAAACGATATGAAGGGATTAATGAAGAAGAGAAGAAGAAAAAGAAGAAGAAGAAGCAGAAAAGCAAGGCAGAAGCAATGGGGGTTTTAGTGGTGGATGAAGACCCTGCGTGGCAGAAACCGGTGAATCTTGAGGAAGATAATGACAACAATTCAACAGATGAAGACAAACCTTTTGTTGATGAGGACATTGAGATTAAGAGGATGAGGAGACTTGAAGCATTGAGGGCCAAGCGTCCATTTAATGCCATATCTGAAGATGGAAGTGGTTGGGTTCCAGTTGGACAATCATCGCCTCCTAAGATTTCAAGTTCCGATATATCTCCACCTCGTAGACACAGGATTAATTCGGAACCTGGATCAGTGTCTCCGGGAGATAGGGCAGAAGATGTTGACTTGTCACCTCCACGGCAGAGACGGAAGCGCCACCACACTCCGTCCCCTGAACCGGCTACAAATCAAGATCAGTTGCCTACAGACCTTTCACCCACAAGAAAAAGTAGGAATGTTGATTCAGATCTTTCTCCACCAAGGAAGAGTAGGAAGGATGTCGATAGAGATCTTTCTCCACCAAGGAAGAGTAGGAAGGATGTTGATCTTTCTCCACCAAGGAAAAAGAAGCAAGTTCCTCCGGATTCTTTGAAAGAGCAACCGAAAGTTGGTTTGATCTCTGGCCGAGAAATGAGGGACGAGATCACTAGAACTAAGAAGGATGAGCGGTTAAGATTTCAACAGATGGATCCTTCTATAAGTGGGAGGGAGGCAGTGCCTATATACCGTGATAAGAAAACAGGGGAACGCATTTCAAAGGAGGAGCTTTTGAAATCACAAAGGAAAGTAGAAGAAAAACCTAAGGAGATAAAGTTGGAATGGGGTAAAGGCTTGGCCCAAAAGCGGGAAGCTGAAACTAAGCTGGAGGAGTTAGAACTTGAGAAGGAGAAACCATTTGCACGGACTAGAGATGATCCAGACCTCGACAAAATGTTGAAGGAGAGAGTAAGATGGGGCGATCCTATGGCACATTTGGTAAAGAAGAAGTATCCCGAGCCAGTTCTCCCTGACTTGGGGGATAGCGAGAAAATGAAGGAATCTGGATTTATTATTCCTCAGGAGATTCCTAATCATAGCTGGTTAAAAAGAGGACTAGATGCTGCACCAAATCGATATGGTATAAGACCAGGAAGACATTGGGATGGAATTGATCGCAGTAATGGATTTGAGAAGGGAATGTTTAAAAGGAAGAATGATAAACAAGCTACGGAGGCGGAAGCTTATCTCTGGTCTGTGGCAGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bud13

Protein Analysis

444

Amino Acids

51.05

Weight (kDa)

9.46

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31870 AT1G31870
fragaria_vesca	FvH4_4g36560 FvH4_4g36560
malus_domestica	MD16G1006500.v1.1
prunus_persica	Prupe.8G202500_v2.0.a1
pyrus_communis	pycom16g00620
rosa_chinensis	RchiOBHm_Chr4g0446311
rosa_laevigata	RLG00000005672
rosa_multiflora	Rmu_co8228037.1_g000001 Rmu_sc0002266.1_g000004
rosa_roxburghii	Rroxscaffold_5G00386760
rosa_rugosa	Rorug04G0370000 Rorug04G0370100 Rorug04G0370200 Rorug04G0370300
rosa_samantha	Rh4AG431900 Rh4BG441100 Rh4CG458400 Rh4DG439800
rosa_wichuraiana	Rw4G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	751
AccI	GTMKAC	1 cut(s)	367
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	3 cut(s)	751, 928, 1298
AclWI	GGATC	5 cut(s)	400, 767, 780, 992, 1037
AcoI	YGGCCR	1 cut(s)	706
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	6 cut(s)	481, 692, 927, 928, 1096, 1097
AgeI	ACCGGT	1 cut(s)	154
AgsI	TTSAA	9 cut(s)	37, 189, 251, 342, 676, 764, 840, 856, 1021
AjnI	CCWGG	2 cut(s)	388, 1210
AluBI	AGCT	6 cut(s)	850, 935, 946, 1161, 1289, 1304
AluI	AGCT	6 cut(s)	850, 935, 946, 1161, 1289, 1304
Alw26I	GTCTC	3 cut(s)	238, 405, 442
AlwI	GGATC	5 cut(s)	400, 767, 780, 992, 1037
Ama87I	CYCGRG	1 cut(s)	1076
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	3 cut(s)	261, 706, 918
ApeKI	GCWGC	1 cut(s)	1184
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AseI	ATTAAT	2 cut(s)	54, 378
AsiGI	ACCGGT	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	261, 919
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	3 cut(s)	169, 426, 510
AvaI	CYCGRG	1 cut(s)	1076
AxyI	CCTNAGG	2 cut(s)	885, 1140
BamHI	GGATCC	1 cut(s)	772
BbsI	GAAGAC	3 cut(s)	141, 204, 1222
BbvI	GCAGC	1 cut(s)	1171
BccI	CCATC	4 cut(s)	287, 763, 1029, 1220
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	2 cut(s)	390, 1212
BciVI	GTATCC	1 cut(s)	1083
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	3 cut(s)	238, 405, 442
BfaI	CTAG	3 cut(s)	732, 990, 1178
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	460
BfuI	GTATCC	1 cut(s)	1083
BglII	AGATCT	2 cut(s)	550, 592
BisI	GCNGC	1 cut(s)	1185
BlsI	GCNGC	1 cut(s)	1186
Bme1390I	CCNGG	3 cut(s)	390, 405, 1212
BmeT110I	CYCGRG	1 cut(s)	1076
BmgT120I	GGNCC	2 cut(s)	261, 919
BmiI	GGNNCC	3 cut(s)	309, 387, 774
BmrFI	CCNGG	3 cut(s)	390, 405, 1212
BmsI	GCATC	1 cut(s)	1171
BpiI	GAAGAC	3 cut(s)	141, 204, 1222
BpmI	CTGGAG	1 cut(s)	968
BpuEI	CTTGAG	2 cut(s)	185, 983
BpuMI	CCSGG	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	1195
BsaBI	GATNNNNATC	3 cut(s)	549, 591, 627
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	440, 563, 605, 641
BsaWI	WCCGGW	2 cut(s)	154, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	881, 911
Bsc4I	CCNNNNNNNGG	6 cut(s)	481, 692, 927, 928, 1096, 1097
Bse118I	RCCGGY	2 cut(s)	154, 481
Bse1I	ACTGG	2 cut(s)	311, 1082
Bse21I	CCTNAGG	2 cut(s)	885, 1140
Bse3DI	GCAATG	1 cut(s)	117
Bse8I	GATNNNNATC	3 cut(s)	549, 591, 627
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	390, 1212
BseCI	ATCGAT	1 cut(s)	1195
BseDI	CCNNGG	4 cut(s)	440, 563, 605, 641
BseGI	GGATG	6 cut(s)	136, 243, 586, 628, 751, 1231
BseJI	GATNNNNATC	3 cut(s)	549, 591, 627
BseLI	CCNNNNNNNGG	6 cut(s)	481, 692, 927, 928, 1096, 1097
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	1154
BseNI	ACTGG	2 cut(s)	311, 1082
BseRI	GAGGAG	3 cut(s)	256, 860, 965
BseXI	GCAGC	1 cut(s)	1171
BsgI	GTGCAG	1 cut(s)	1170
BshFI	GGCC	3 cut(s)	263, 708, 920
BshTI	ACCGGT	1 cut(s)	154
BshVI	ATCGAT	1 cut(s)	1195
BsiHKCI	CYCGRG	1 cut(s)	1076
BsiSI	CCGG	4 cut(s)	155, 404, 482, 665
BslFI	GGGAC	2 cut(s)	457, 734
BslI	CCNNNNNNNGG	6 cut(s)	481, 692, 927, 928, 1096, 1097
BsmAI	GTCTC	3 cut(s)	238, 405, 442
BsmBI	CGTCTC	1 cut(s)	442
BsmFI	GGGAC	2 cut(s)	457, 734
BsnI	GGCC	3 cut(s)	263, 708, 920
BsoBI	CYCGRG	1 cut(s)	1076
Bsp13I	TCCGGA	1 cut(s)	664
BspACI	CCGC	3 cut(s)	751, 928, 1298
BspANI	GGCC	3 cut(s)	263, 708, 920
BspCNI	CTCAG	1 cut(s)	1153
BspDI	ATCGAT	1 cut(s)	1195
BspEI	TCCGGA	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	309, 387, 774
BspPI	GGATC	5 cut(s)	400, 767, 780, 992, 1037
BsrBI	CCGCTC	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	2 cut(s)	154, 481
BsrI	ACTGG	2 cut(s)	311, 1082
BssAI	RCCGGY	2 cut(s)	154, 481
BssECI	CCNNGG	4 cut(s)	440, 563, 605, 641
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	563, 605, 641
Bst2UI	CCWGG	2 cut(s)	390, 1212
Bst4CI	ACNGT	1 cut(s)	812
Bst6I	CTCTTC	3 cut(s)	57, 563, 605
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	5 cut(s)	333, 738, 885, 942, 1140
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	6 cut(s)	136, 243, 586, 628, 751, 1231
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstMAI	GTCTC	3 cut(s)	238, 405, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 1295
BstNI	CCWGG	2 cut(s)	390, 1212
BstSCI	CCNGG	3 cut(s)	388, 403, 1210
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	1171
BstV2I	GAAGAC	3 cut(s)	141, 204, 1222
BstX2I	RGATCY	3 cut(s)	550, 592, 772
BstYI	RGATCY	3 cut(s)	550, 592, 772
Bsu15I	ATCGAT	1 cut(s)	1195
Bsu36I	CCTNAGG	2 cut(s)	885, 1140
BsuI	GTATCC	1 cut(s)	1083
BsuRI	GGCC	3 cut(s)	263, 708, 920
BsuTUI	ATCGAT	1 cut(s)	1195
BtgI	CCRYGG	1 cut(s)	440
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	6 cut(s)	136, 243, 586, 628, 751, 1231
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	20, 402, 804
CfoI	GCGC	1 cut(s)	459
Cfr10I	RCCGGY	2 cut(s)	154, 481
Cfr13I	GGNCC	2 cut(s)	261, 919
ClaI	ATCGAT	1 cut(s)	1195
CseI	GACGC	1 cut(s)	257
CspAI	ACCGGT	1 cut(s)	154
DdeI	CTNAG	5 cut(s)	333, 738, 885, 942, 1140
DraI	TTTAAA	1 cut(s)	1267
EaeI	YGGCCR	1 cut(s)	706
Eam1104I	CTCTTC	3 cut(s)	57, 563, 605
EarI	CTCTTC	3 cut(s)	57, 563, 605
EciI	GGCGGA	1 cut(s)	1313
Eco130I	CCWWGG	3 cut(s)	563, 605, 641
Eco57I	CTGAAG	1 cut(s)	309
Eco81I	CCTNAGG	2 cut(s)	885, 1140
Eco88I	CYCGRG	1 cut(s)	1076
EcoRII	CCWGG	2 cut(s)	388, 1210
EcoT14I	CCWWGG	3 cut(s)	563, 605, 641
ErhI	CCWWGG	3 cut(s)	563, 605, 641
Esp3I	CGTCTC	1 cut(s)	442
FaqI	GGGAC	2 cut(s)	457, 734
FauI	CCCGC	1 cut(s)	921
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	1185
FokI	GGATG	6 cut(s)	143, 250, 593, 635, 758, 1238
Fsp4HI	GCNGC	1 cut(s)	1185
FspBI	CTAG	3 cut(s)	732, 990, 1178
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	1 cut(s)	1185
GsuI	CTGGAG	1 cut(s)	968
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	3 cut(s)	263, 708, 920
HapII	CCGG	4 cut(s)	155, 404, 482, 665
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	459
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	1302
HinfI	GANTC	5 cut(s)	160, 545, 668, 1121, 1147
HpaII	CCGG	4 cut(s)	155, 404, 482, 665
HphI	GGTGA	3 cut(s)	169, 426, 510
Hpy166II	GTNNAC	2 cut(s)	368, 427
Hpy188I	TCNGA	4 cut(s)	289, 349, 385, 550
Hpy188III	TCNNGA	7 cut(s)	164, 494, 665, 1001, 1076, 1125, 1142
Hpy8I	GTNNAC	2 cut(s)	368, 427
HpyAV	CCTTC	9 cut(s)	41, 571, 613, 736, 786, 961, 1015, 1111, 1249
HpyCH4III	ACNGT	1 cut(s)	812
HpyCH4V	TGCA	2 cut(s)	983, 1187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 1295
HpyF3I	CTNAG	5 cut(s)	333, 738, 885, 942, 1140
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	457
Kpn2I	TCCGGA	1 cut(s)	664
LmnI	GCTCC	1 cut(s)	847
Lsp1109I	GCAGC	1 cut(s)	1171
LweI	GCATC	1 cut(s)	1171
MaeI	CTAG	3 cut(s)	732, 990, 1178
MaeIII	GTNAC	1 cut(s)	432
MbiI	CCGCTC	1 cut(s)	751
MflI	RGATCY	3 cut(s)	550, 592, 772
MluCI	AATT	3 cut(s)	184, 379, 1230
MmeI	TCCRAC	2 cut(s)	295, 879
MroI	TCCGGA	1 cut(s)	664
MseI	TTAA	7 cut(s)	54, 231, 276, 378, 755, 1166, 1266
MslI	CAYNNNNRTG	1 cut(s)	1224
MspI	CCGG	4 cut(s)	155, 404, 482, 665
MspR9I	CCNGG	3 cut(s)	390, 405, 1212
MvaI	CCWGG	2 cut(s)	390, 1212
MwoI	GCNNNNNNNGC	2 cut(s)	260, 1295
NciI	CCSGG	1 cut(s)	405
NlaIV	GGNNCC	3 cut(s)	309, 387, 774
NmeAIII	GCCGAG	1 cut(s)	734
NmuCI	GTSAC	1 cut(s)	432
PfeI	GAWTC	5 cut(s)	160, 545, 668, 1121, 1147
PfoI	TCCNGGA	1 cut(s)	403
PinAI	ACCGGT	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	1186
PshBI	ATTAAT	2 cut(s)	54, 378
Psp6I	CCWGG	2 cut(s)	388, 1210
PspGI	CCWGG	2 cut(s)	388, 1210
PspN4I	GGNNCC	3 cut(s)	309, 387, 774
PspPI	GGNCC	2 cut(s)	261, 919
PsuI	RGATCY	3 cut(s)	550, 592, 772
RseI	CAYNNNNRTG	1 cut(s)	1224
SaqAI	TTAA	7 cut(s)	54, 231, 276, 378, 755, 1166, 1266
SatI	GCNGC	1 cut(s)	1185
Sau96I	GGNCC	2 cut(s)	261, 919
ScrFI	CCNGG	3 cut(s)	390, 405, 1212
SfaNI	GCATC	1 cut(s)	1171
SfcI	CTRYAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	1224
SmlI	CTYRAG	2 cut(s)	164, 962
SmoI	CTYRAG	2 cut(s)	164, 962
Sse9I	AATT	3 cut(s)	184, 379, 1230
SsiI	CCGC	3 cut(s)	751, 928, 1298
SspMI	CTAG	3 cut(s)	732, 990, 1178
StyD4I	CCNGG	3 cut(s)	388, 403, 1210
StyI	CCWWGG	3 cut(s)	563, 605, 641
TaaI	ACNGT	1 cut(s)	812
TaqI	TCGA	4 cut(s)	11, 585, 1008, 1195
TasI	AATT	3 cut(s)	184, 379, 1230
TfiI	GAWTC	5 cut(s)	160, 545, 668, 1121, 1147
Tru1I	TTAA	7 cut(s)	54, 231, 276, 378, 755, 1166, 1266
Tru9I	TTAA	7 cut(s)	54, 231, 276, 378, 755, 1166, 1266
TscAI	CASTG	3 cut(s)	27, 402, 804
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	1 cut(s)	1184
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	5 cut(s)	60, 72, 147, 210, 1130
TspGWI	ACGGA	4 cut(s)	459, 466, 1000, 1307
TspRI	CASTG	3 cut(s)	27, 402, 804
VspI	ATTAAT	2 cut(s)	54, 378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1218
XmiI	GTMKAC	1 cut(s)	367
XspI	CTAG	3 cut(s)	732, 990, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.