Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8228037.1

Orthogroup ID

OG0010092

Physical Location & Seq

Genomic Coordinates Forward (+)

15 .. 510

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8228037.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atggcacatttggtaaagaaaaagtatcctgaagcagttctccctaacctaggggatagcgagaaaatgaaggactctggatttattatccctcaggatattcctaatcatagctggttaaaaagaggattagatgctgcaccaaatcgatatggtataaaaccagggagacattgggatggagttgatcgcagtaacggatttgagaaaggattgttcaaacggactaacgagaaacaagctactcagacggaggcttatctttggtctgtcgcagatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bud13

Protein Analysis

94

Amino Acids

10.7

Weight (kDa)

9.26

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31870 AT1G31870
fragaria_vesca	FvH4_4g36560 FvH4_4g36560
malus_domestica	MD16G1006500.v1.1
prunus_persica	Prupe.8G202500_v2.0.a1
pyrus_communis	pycom16g00620
rosa_chinensis	RchiOBHm_Chr4g0446311
rosa_laevigata	RLG00000005672
rosa_multiflora	Rmu_co8228037.1_g000001 Rmu_sc0002266.1_g000004
rosa_roxburghii	Rroxscaffold_5G00386760
rosa_rugosa	Rorug04G0370000 Rorug04G0370100 Rorug04G0370200 Rorug04G0370300
rosa_samantha	Rh4AG431900 Rh4BG441100 Rh4CG458400 Rh4DG439800
rosa_wichuraiana	Rw4G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	2 cut(s)	114, 242
AluI	AGCT	2 cut(s)	114, 242
Alw26I	GTCTC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	36
AspA2I	CCTAGG	1 cut(s)	49
AvrII	CCTAGG	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	36
BisI	GCNGC	1 cut(s)	138
BlnI	CCTAGG	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	49, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	49, 164
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	2 cut(s)	107, 260
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	106, 259
BspDI	ATCGAT	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	49, 164
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	93, 246
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	148
CviJI	RGCY	3 cut(s)	114, 242, 257
CviKI_1	RGCY	3 cut(s)	114, 242, 257
DdeI	CTNAG	2 cut(s)	93, 246
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	93
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaiI	YATR	4 cut(s)	111, 153, 158, 281
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	3 cut(s)	29, 78, 95
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	93, 246
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	42, 63, 80, 100, 150, 177
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	3 cut(s)	102, 119, 247
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	3 cut(s)	51, 116, 244
SfaNI	GCATC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	177
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	49
TaqI	TCGA	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	3 cut(s)	213, 238, 266
XagI	CCTNNNNNAGG	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XmaJI	CCTAGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.