Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002266.1

Orthogroup ID

OG0010092

Physical Location & Seq

Genomic Coordinates Forward (+)

17081 .. 22295

Gene Structure 5215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002266.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

atggcggcttccacgaaatcgcttaaagagtatttgaaacgatacgaatctagtaataacgaggacgatacgaagaagaagaggaagaagaagcagaagagcaaggcggaggcaatgggggttaaagtggtggatgaggaccctgtgtggcagaaaccggtgaaaattgagggagaagaagataacaattcagctgacgaagaggagaagcctttagttgatgaagacattgaggtgaagaggatgaagaggcttgagttattaagggcgcggcggccctatgatgctatatctgaagatggcagtggttgggttaaggtccctctgaaacgagaaggctccgaagaggctgacttgtcacctccgcggaagcggtatctttctccctcacctgagcctggaatggcttcgaggggatcagacctttcgccgccgaggaaaagtaggaggggcggtgatgaagatctttctccaccgaggaagagtaggagcaatgttgaagatctttctccaccgaggaagagtaggaacaatgttgaagatatttctccaccgaggaagaggaggaacaatgttgcggatctttctccaccgaggaagagttggaacaatggtgatggagatctttctccaccgaggaagagtaggaacaatgttgcagatctttctccaccgaggaacaggcggaacaatagtaggaacaatggtgatggagatctttctccaccgaggaagaggaggaacaatgttgcggatctttctccaccgaggaagagtaggaacaatggtgatggagacctttctccaccgaggaagagtaggaacaatgttgcagatctttctccaccgaggaacaggcggaacaatgttgaagatctttctccaccaaggaagagaaggaacaatggtgatgcagatctttctccaccaaggaaaagtaggagggatattgatgaagatctatctccaccaaggaaaaagaagcaagtatctccgggtcctttgaaagagaagccaaaaagtggtttgatatctggccgagatatcagcgaagagatttctaaaacaaagagagctgagcagtcgagatttgaacagatggatccttctgaaactgggcaacaagcagcagttgtatttcgtaataagaaaacaggagaacgcatgtcggaggaggagcgattgaaatcagaaaagaaacttgatgaaaagcctaaggagataaagttggaatggggtaagggcttggctcaaaagcgggaagctgaagctaagctagaggaattagaacgtgagaaggaaaaaccatttgcacggactagagatgatccagaacttgacaaaatgatgaaggagagagtaagatggggtgacccaatggcacatttggtaaaggagataaagttggaatggggtaagggcttggctcaaaagcgggaagctgaagctaagctagaggaattagaacgtgagaaggaaaaaccatttgcacggactagagatgatccagaacttgacaaaatgatgaaggagagagtacgatggggtgacccaatggcacatttggtaaagaaaaagtatcctgaagcagttctccctaacctaggggatagcgagaaaatgaaggactctggatttattatccctcaggatattcctaatcatagctggttaaaaagaggattagatgctgcaccaaatcgatatggtataaaaccagggagacattgggatggagttgatcgcagtaacggatttgagaaaggattgttcaaacggactaacgagaaacaagctactcagacggaggcttatctttggtctgtcgcagatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bud13

Protein Analysis

612

Amino Acids

70.2

Weight (kDa)

9.7

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31870 AT1G31870
fragaria_vesca	FvH4_4g36560 FvH4_4g36560
malus_domestica	MD16G1006500.v1.1
prunus_persica	Prupe.8G202500_v2.0.a1
pyrus_communis	pycom16g00620
rosa_chinensis	RchiOBHm_Chr4g0446311
rosa_laevigata	RLG00000005672
rosa_multiflora	Rmu_co8228037.1_g000001 Rmu_sc0002266.1_g000004
rosa_roxburghii	Rroxscaffold_5G00386760
rosa_rugosa	Rorug04G0370000 Rorug04G0370100 Rorug04G0370200 Rorug04G0370300
rosa_samantha	Rh4AG431900 Rh4BG441100 Rh4CG458400 Rh4DG439800
rosa_wichuraiana	Rw4G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1022
AccII	CGCG	2 cut(s)	271, 367
AclWI	GGATC	7 cut(s)	424, 588, 762, 1097, 1110, 1322, 1499
AcoI	YGGCCR	1 cut(s)	1036
AcuI	CTGAAG	4 cut(s)	315, 1287, 1464, 1605
AfaI	GTAC	1 cut(s)	1539
AfiI	CCNNNNNNNGG	3 cut(s)	398, 1022, 1604
AgeI	ACCGGT	1 cut(s)	157
AgsI	TTSAA	8 cut(s)	37, 500, 539, 872, 1006, 1094, 1186, 1774
AjnI	CCWGG	2 cut(s)	397, 1717
Alw26I	GTCTC	2 cut(s)	789, 1717
AlwI	GGATC	7 cut(s)	424, 588, 762, 1097, 1110, 1322, 1499
AoxI	GGCC	2 cut(s)	275, 1036
ApeKI	GCWGC	2 cut(s)	1127, 1691
AsiGI	ACCGGT	1 cut(s)	157
Asp700I	GAANNNNTTC	2 cut(s)	406, 1590
AspA2I	CCTAGG	1 cut(s)	1603
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	4 cut(s)	139, 276, 319, 998
AsuC2I	CCSGG	1 cut(s)	996
AvaII	GGWCC	3 cut(s)	139, 319, 998
AvrII	CCTAGG	1 cut(s)	1603
AxyI	CCTNAGG	2 cut(s)	1215, 1647
BamHI	GGATCC	1 cut(s)	1102
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	1139, 1678
BccI	CCATC	8 cut(s)	293, 611, 704, 785, 1093, 1359, 1536, 1727
BciT130I	CCWGG	2 cut(s)	399, 1719
BciVI	GTATCC	1 cut(s)	1590
BcnI	CCSGG	1 cut(s)	996
BcoDI	GTCTC	2 cut(s)	789, 1717
BfaI	CTAG	6 cut(s)	51, 1277, 1320, 1454, 1497, 1604
BfuI	GTATCC	1 cut(s)	1590
BglII	AGATCT	9 cut(s)	463, 502, 622, 661, 715, 835, 874, 916, 958
BisI	GCNGC	6 cut(s)	6, 272, 275, 431, 1128, 1692
BlnI	CCTAGG	1 cut(s)	1603
BlpI	GCTNAGC	3 cut(s)	1077, 1272, 1449
BlsI	GCNGC	6 cut(s)	7, 273, 276, 432, 1129, 1693
Bme1390I	CCNGG	3 cut(s)	399, 996, 1719
Bme18I	GGWCC	3 cut(s)	139, 319, 998
BmgT120I	GGNCC	4 cut(s)	139, 276, 319, 998
BmiI	GGNNCC	5 cut(s)	141, 321, 340, 999, 1104
BmrFI	CCNGG	3 cut(s)	399, 996, 1719
BmrI	ACTGGG	1 cut(s)	1125
BmsI	GCATC	3 cut(s)	274, 901, 1678
BmuI	ACTGGG	1 cut(s)	1125
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	3 cut(s)	1077, 1272, 1449
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	996
Bsa29I	ATCGAT	1 cut(s)	1702
BsaBI	GATNNNNATC	7 cut(s)	46, 462, 621, 714, 915, 957, 1186
BsaI	GGTCTC	1 cut(s)	789
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	6 cut(s)	439, 469, 1211, 1241, 1388, 1418
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 1022, 1604
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	1120
Bse21I	CCTNAGG	2 cut(s)	1215, 1647
Bse3DI	GCAATG	2 cut(s)	120, 499
Bse8I	GATNNNNATC	7 cut(s)	46, 462, 621, 714, 915, 957, 1186
BseBI	CCWGG	2 cut(s)	399, 1719
BseCI	ATCGAT	1 cut(s)	1702
BseGI	GGATG	3 cut(s)	139, 249, 1738
BseJI	GATNNNNATC	7 cut(s)	46, 462, 621, 714, 915, 957, 1186
BseLI	CCNNNNNNNGG	3 cut(s)	398, 1022, 1604
BseMI	GCAATG	2 cut(s)	120, 499
BseMII	CTCAG	4 cut(s)	384, 1068, 1661, 1814
BseNI	ACTGG	1 cut(s)	1120
BseRI	GAGGAG	5 cut(s)	218, 577, 751, 1187, 1190
BseXI	GCAGC	2 cut(s)	1139, 1678
BsgI	GTGCAG	1 cut(s)	1677
Bsh1236I	CGCG	2 cut(s)	271, 367
BshFI	GGCC	2 cut(s)	277, 1038
BshTI	ACCGGT	1 cut(s)	157
BshVI	ATCGAT	1 cut(s)	1702
BsiSI	CCGG	2 cut(s)	158, 995
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	398, 1022, 1604
BsmAI	GTCTC	2 cut(s)	789, 1717
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	277, 1038
Bso31I	GGTCTC	1 cut(s)	789
Bsp1720I	GCTNAGC	3 cut(s)	1077, 1272, 1449
BspANI	GGCC	2 cut(s)	277, 1038
BspCNI	CTCAG	4 cut(s)	385, 1069, 1660, 1813
BspDI	ATCGAT	1 cut(s)	1702
BspFNI	CGCG	2 cut(s)	271, 367
BspLI	GGNNCC	5 cut(s)	141, 321, 340, 999, 1104
BspPI	GGATC	7 cut(s)	424, 588, 762, 1097, 1110, 1322, 1499
BspQI	GCTCTTC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	789
BsrDI	GCAATG	2 cut(s)	120, 499
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	1120
BssAI	RCCGGY	1 cut(s)	157
BssT1I	CCWWGG	4 cut(s)	887, 929, 971, 1603
Bst2UI	CCWGG	2 cut(s)	399, 1719
BstDEI	CTNAG	7 cut(s)	393, 1077, 1215, 1272, 1449, 1647, 1800
BstDSI	CCRYGG	1 cut(s)	365
BstEII	GGTNACC	2 cut(s)	1370, 1547
BstENI	CCTNNNNNAGG	1 cut(s)	1602
BstF5I	GGATG	3 cut(s)	139, 249, 1738
BstFNI	CGCG	2 cut(s)	271, 367
BstHHI	GCGC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	789, 1717
BstNI	CCWGG	2 cut(s)	399, 1719
BstNSI	RCATGY	1 cut(s)	1168
BstPI	GGTNACC	2 cut(s)	1370, 1547
BstSCI	CCNGG	3 cut(s)	397, 994, 1717
BstUI	CGCG	2 cut(s)	271, 367
BstV1I	GCAGC	2 cut(s)	1139, 1678
BstV2I	GAAGAC	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	1702
Bsu36I	CCTNAGG	2 cut(s)	1215, 1647
BsuI	GTATCC	1 cut(s)	1590
BsuRI	GGCC	2 cut(s)	277, 1038
BsuTUI	ATCGAT	1 cut(s)	1702
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	139, 249, 1738
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	4 cut(s)	139, 276, 319, 998
Cfr42I	CCGCGG	1 cut(s)	368
ClaI	ATCGAT	1 cut(s)	1702
Csp6I	GTAC	1 cut(s)	1538
CspAI	ACCGGT	1 cut(s)	157
CviAII	CATG	1 cut(s)	1165
CviQI	GTAC	1 cut(s)	1538
DdeI	CTNAG	7 cut(s)	393, 1077, 1215, 1272, 1449, 1647, 1800
EaeI	YGGCCR	1 cut(s)	1036
EciI	GGCGGA	3 cut(s)	122, 700, 874
Eco130I	CCWWGG	4 cut(s)	887, 929, 971, 1603
Eco31I	GGTCTC	1 cut(s)	789
Eco32I	GATATC	2 cut(s)	1032, 1045
Eco47I	GGWCC	3 cut(s)	139, 319, 998
Eco57I	CTGAAG	4 cut(s)	315, 1287, 1464, 1605
Eco81I	CCTNAGG	2 cut(s)	1215, 1647
Eco91I	GGTNACC	2 cut(s)	1370, 1547
EcoNI	CCTNNNNNAGG	1 cut(s)	1602
EcoO109I	RGGNCCY	3 cut(s)	139, 319, 998
EcoO65I	GGTNACC	2 cut(s)	1370, 1547
EcoRII	CCWGG	2 cut(s)	397, 1717
EcoRV	GATATC	2 cut(s)	1032, 1045
EcoT14I	CCWWGG	4 cut(s)	887, 929, 971, 1603
ErhI	CCWWGG	4 cut(s)	887, 929, 971, 1603
FaeI	CATG	1 cut(s)	1168
FaiI	YATR	7 cut(s)	282, 290, 1166, 1665, 1707, 1712, 1835
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	1164
FauI	CCCGC	2 cut(s)	1251, 1428
Fnu4HI	GCNGC	6 cut(s)	6, 272, 275, 431, 1128, 1692
FokI	GGATG	3 cut(s)	146, 256, 1745
Fsp4HI	GCNGC	6 cut(s)	6, 272, 275, 431, 1128, 1692
FspBI	CTAG	6 cut(s)	51, 1277, 1320, 1454, 1497, 1604
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	6 cut(s)	6, 272, 275, 431, 1128, 1692
HaeIII	GGCC	2 cut(s)	277, 1038
HapII	CCGG	2 cut(s)	158, 995
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	1168
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	2 cut(s)	47, 1628
HpaII	CCGG	2 cut(s)	158, 995
Hpy188I	TCNGA	8 cut(s)	295, 327, 343, 421, 1111, 1171, 1192, 1803
Hpy188III	TCNNGA	6 cut(s)	1086, 1331, 1508, 1583, 1632, 1649
HpyAV	CCTTC	8 cut(s)	329, 891, 1116, 1291, 1345, 1468, 1522, 1618
HpyCH4IV	ACGT	2 cut(s)	1291, 1468
HpyCH4V	TGCA	6 cut(s)	659, 833, 914, 1313, 1490, 1694
HpyF3I	CTNAG	7 cut(s)	393, 1077, 1215, 1272, 1449, 1647, 1800
HpySE526I	ACGT	2 cut(s)	1291, 1468
Hsp92II	CATG	1 cut(s)	1168
HspAI	GCGC	1 cut(s)	269
KspI	CCGCGG	1 cut(s)	368
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	3 cut(s)	344, 489, 1177
Lsp1109I	GCAGC	2 cut(s)	1139, 1678
LweI	GCATC	3 cut(s)	274, 901, 1678
MaeI	CTAG	6 cut(s)	51, 1277, 1320, 1454, 1497, 1604
MaeII	ACGT	2 cut(s)	1291, 1468
MaeIII	GTNAC	4 cut(s)	357, 1370, 1547, 1748
MluCI	AATT	4 cut(s)	165, 187, 1283, 1460
MlyI	GAGTC	1 cut(s)	1622
MmeI	TCCRAC	4 cut(s)	584, 1149, 1209, 1386
MroXI	GAANNNNTTC	2 cut(s)	406, 1590
MseI	TTAA	5 cut(s)	24, 123, 263, 315, 1673
MslI	CAYNNNNRTG	2 cut(s)	233, 1731
MspA1I	CMGCKG	2 cut(s)	194, 367
MspI	CCGG	2 cut(s)	158, 995
MspR9I	CCNGG	3 cut(s)	399, 996, 1719
MvaI	CCWGG	2 cut(s)	399, 1719
MvnI	CGCG	2 cut(s)	271, 367
NciI	CCSGG	1 cut(s)	996
NlaIII	CATG	1 cut(s)	1168
NlaIV	GGNNCC	5 cut(s)	141, 321, 340, 999, 1104
NmeAIII	GCCGAG	2 cut(s)	459, 1064
NmuCI	GTSAC	3 cut(s)	357, 1370, 1547
NspI	RCATGY	1 cut(s)	1168
PciSI	GCTCTTC	1 cut(s)	92
PdmI	GAANNNNTTC	2 cut(s)	406, 1590
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	1022
PinAI	ACCGGT	1 cut(s)	157
PkrI	GCNGC	6 cut(s)	7, 273, 276, 432, 1129, 1693
PleI	GAGTC	1 cut(s)	1622
PpsI	GAGTC	1 cut(s)	1622
PpuMI	RGGWCCY	3 cut(s)	139, 319, 998
Psp5II	RGGWCCY	3 cut(s)	139, 319, 998
Psp6I	CCWGG	2 cut(s)	397, 1717
PspEI	GGTNACC	2 cut(s)	1370, 1547
PspGI	CCWGG	2 cut(s)	397, 1717
PspN4I	GGNNCC	5 cut(s)	141, 321, 340, 999, 1104
PspPI	GGNCC	4 cut(s)	139, 276, 319, 998
PspPPI	RGGWCCY	3 cut(s)	139, 319, 998
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	1539
RsaNI	GTAC	1 cut(s)	1538
RseI	CAYNNNNRTG	2 cut(s)	233, 1731
SacII	CCGCGG	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	5 cut(s)	24, 123, 263, 315, 1673
SatI	GCNGC	6 cut(s)	6, 272, 275, 431, 1128, 1692
Sau96I	GGNCC	4 cut(s)	139, 276, 319, 998
SchI	GAGTC	1 cut(s)	1622
ScrFI	CCNGG	3 cut(s)	399, 996, 1719
SfaNI	GCATC	3 cut(s)	274, 901, 1678
Sfr303I	CCGCGG	1 cut(s)	368
SgrBI	CCGCGG	1 cut(s)	368
SinI	GGWCC	3 cut(s)	139, 319, 998
SmiMI	CAYNNNNRTG	2 cut(s)	233, 1731
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	165, 187, 1283, 1460
SspMI	CTAG	6 cut(s)	51, 1277, 1320, 1454, 1497, 1604
StyD4I	CCNGG	3 cut(s)	397, 994, 1717
StyI	CCWWGG	4 cut(s)	887, 929, 971, 1603
TaiI	ACGT	2 cut(s)	1294, 1471
TaqI	TCGA	3 cut(s)	410, 1085, 1702
TasI	AATT	4 cut(s)	165, 187, 1283, 1460
TauI	GCSGC	4 cut(s)	8, 274, 277, 433
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	5 cut(s)	24, 123, 263, 315, 1673
Tru9I	TTAA	5 cut(s)	24, 123, 263, 315, 1673
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	3 cut(s)	357, 1370, 1547
TseI	GCWGC	2 cut(s)	1127, 1691
Tsp45I	GTSAC	3 cut(s)	357, 1370, 1547
TspDTI	ATGAA	8 cut(s)	237, 260, 474, 969, 1221, 1364, 1541, 1637
TspGWI	ACGGA	5 cut(s)	1330, 1507, 1767, 1792, 1820
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	1022
VpaK11BI	GGWCC	3 cut(s)	139, 319, 998
XagI	CCTNNNNNAGG	1 cut(s)	1602
XceI	RCATGY	1 cut(s)	1168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1725
XmaJI	CCTAGG	1 cut(s)	1603
XmnI	GAANNNNTTC	2 cut(s)	406, 1590
XspI	CTAG	6 cut(s)	51, 1277, 1320, 1454, 1497, 1604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.