Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010092

Physical Location & Seq

Genomic Coordinates Forward (+)

375166 .. 377647

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00620.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGCGTCTTCGAGTAAATCTTTGAAAGAGTATTTGAAACGGTATGAAGTGAATAATGAAGAGGATAAGAAGAAAAAGAAGAAGAACAAGAAGCAGAAAACCAAGCCGGAGCCAATGGGCGTTTTAGTGGTTGATGAAGATCCTGTTTGGCAGAAGCCGGTGAATGTTGAGGAAGATAATGGTGACAATTCATCGGATGAAGACAAACCTGTAGTTGATGAGGACATTGAGATTAAGAGGATGAAGAGACTTCAACAATTGAGGGCCAGACGTCCCTTTAATTCCATATCCGAAGATGGAAGCGGTTGGGTTACAGTTGGAGACTCTCCTCCGAAGCAGTCAAAGTCTGATTTATCTCCACCTCGTAGGGAGAGGAGTTTGGTTCCGAACTGTGAACCAATGTCTCCGGAAAATAGGAGGAAGGATGCTGACTTGTCACCTCCACGGCAGAGACGGAAGCGCCACCACACCCCGTCACCCGAGCCTGAAACGAACCACGAGTACTTGCCTCCTCGTCCTGGATCAGATCTTTCACCCCCAAGGAAAAGGAGGCAGGACGTTGATGCAGATCTGTCTCCACCAAGGAAGAGCAGGAAAGATAGTAATGAAGATCTGTCTCCACCAAGGAAGGGCAGGAAGTACGCTGATGCAGATCTTTCTCCACCAAGGAAAAGTAGGAACAATGTTGATGCTGATCTTTCTCCACCGAGGAAAAGTAGGAACAATTTTGATGCTGATCTTTCTCCACCAAGGAATAGCAGGAGGGATGTTGATACTGATCTTTCCCCACCAAGGAAAAGCAGGAAGGATGTTGATGGTGATCTTTCCCCACCAAGGAATAAAAAGCAAGTTACTCCGCACCCTCGAAAAGAGCAAGCAAAAGTTGGTCTGATCTCTGGCCGAGAGATTAGTGACGAGATCAATAAAACGAAGAAGGATGAGTGGTTAAGATTTCAACGCATGGATCCTTCTGTAAGTGGGAGAGAGGCAGTACCTATATATCGTGACAAGAAAACAGGGGAACGCATTTCGAAGGAGGAGCTTTTGAAATCGCAAAGGAAAATAGATGAAAAACCAAAGGAGATAAAGTTGGAATGGGGCAAAGGCTTGGCCCAAAAGCGAGAAGCTGAAACTAAGCTGGAGGAATTAGAACTTGAGAAGGATAAGCCTTTTGCACGGACTAGAGATGATCCTGAACTCGACAAAATATTGAAGGAGAGAACAAGGTGGGGCGATCCCATGGCACATTTGGTAAAGAAAAAGCATTCCGAGCCAGTTCTCTCTAACTTGGGGGATGATGAGAAAATGAAGGAATCTGGATTCATTATTCCCCAGGATATTCCTGTTCACAGCTGGTTAAAAAGAGGATTGGATGCTGCACCAAATCGATACGGATTTGAGAAGGGAATGTTCAAAAGGAAGAACGAGAAACAAGCCACGGAGGCAGAAGCTTATCTTTGGTCTGTGGCGGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bud13

Protein Analysis

493

Amino Acids

56.84

Weight (kDa)

9.52

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31870 AT1G31870
fragaria_vesca	FvH4_4g36560 FvH4_4g36560
malus_domestica	MD16G1006500.v1.1
prunus_persica	Prupe.8G202500_v2.0.a1
pyrus_communis	pycom16g00620
rosa_chinensis	RchiOBHm_Chr4g0446311
rosa_laevigata	RLG00000005672
rosa_multiflora	Rmu_co8228037.1_g000001 Rmu_sc0002266.1_g000004
rosa_roxburghii	Rroxscaffold_5G00386760
rosa_rugosa	Rorug04G0370000 Rorug04G0370100 Rorug04G0370200 Rorug04G0370300
rosa_samantha	Rh4AG431900 Rh4BG441100 Rh4CG458400 Rh4DG439800
rosa_wichuraiana	Rw4G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	274
AccIII	TCCGGA	1 cut(s)	406
AciI	CCGC	3 cut(s)	303, 857, 1469
AclWI	GGATC	6 cut(s)	134, 529, 959, 972, 1184, 1229
AcoI	YGGCCR	1 cut(s)	898
AcyI	GRCGYC	2 cut(s)	5, 271
AfaI	GTAC	3 cut(s)	503, 641, 993
AfiI	CCNNNNNNNGG	4 cut(s)	518, 629, 792, 834
AgsI	TTSAA	7 cut(s)	25, 37, 254, 956, 1048, 1213, 1414
AjnI	CCWGG	2 cut(s)	517, 1332
AluBI	AGCT	5 cut(s)	1042, 1127, 1138, 1353, 1451
AluI	AGCT	5 cut(s)	1042, 1127, 1138, 1353, 1451
Alw26I	GTCTC	6 cut(s)	241, 315, 408, 445, 579, 621
AlwI	GGATC	6 cut(s)	134, 529, 959, 972, 1184, 1229
Ama87I	CYCGRG	1 cut(s)	479
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	3 cut(s)	264, 898, 1110
ApeKI	GCWGC	1 cut(s)	1376
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	264, 1111
AsuHPI	GGTGA	6 cut(s)	172, 194, 429, 468, 525, 830
AsuII	TTCGAA	1 cut(s)	1031
AvaI	CYCGRG	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	964
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	1363
BccI	CCATC	2 cut(s)	290, 809
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	2 cut(s)	519, 1334
BcoDI	GTCTC	6 cut(s)	241, 315, 408, 445, 579, 621
BfaI	CTAG	1 cut(s)	1182
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	463
BglI	GCCNNNNNGGC	1 cut(s)	1442
BglII	AGATCT	4 cut(s)	526, 568, 610, 652
BisI	GCNGC	1 cut(s)	1377
BlsI	GCNGC	1 cut(s)	1378
BmcAI	AGTACT	1 cut(s)	503
Bme1390I	CCNGG	2 cut(s)	519, 1334
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	264, 1111
BmiI	GGNNCC	3 cut(s)	111, 384, 966
BmrFI	CCNGG	2 cut(s)	519, 1334
BmsI	GCATC	6 cut(s)	415, 553, 637, 679, 721, 1363
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	1160
Bpu14I	TTCGAA	1 cut(s)	1031
BpuEI	CTTGAG	1 cut(s)	1175
Bsa29I	ATCGAT	1 cut(s)	1387
BsaBI	GATNNNNATC	7 cut(s)	138, 567, 651, 693, 735, 777, 819
BsaHI	GRCGYC	2 cut(s)	5, 271
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	1073, 1103
Bsc4I	CCNNNNNNNGG	4 cut(s)	518, 629, 792, 834
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	1274
Bse8I	GATNNNNATC	7 cut(s)	138, 567, 651, 693, 735, 777, 819
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	2 cut(s)	519, 1334
BseCI	ATCGAT	1 cut(s)	1387
BseGI	GGATG	8 cut(s)	202, 246, 430, 772, 814, 943, 1300, 1378
BseJI	GATNNNNATC	7 cut(s)	138, 567, 651, 693, 735, 777, 819
BseLI	CCNNNNNNNGG	4 cut(s)	518, 629, 792, 834
BseNI	ACTGG	1 cut(s)	1274
BseRI	GAGGAG	4 cut(s)	318, 388, 501, 1052
BseXI	GCAGC	1 cut(s)	1363
BsgI	GTGCAG	1 cut(s)	1362
BshFI	GGCC	3 cut(s)	266, 900, 1112
BshVI	ATCGAT	1 cut(s)	1387
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	3 cut(s)	107, 158, 407
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	4 cut(s)	518, 629, 792, 834
BsmAI	GTCTC	6 cut(s)	241, 315, 408, 445, 579, 621
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	1264
BsnI	GGCC	3 cut(s)	266, 900, 1112
BsoBI	CYCGRG	1 cut(s)	479
Bsp119I	TTCGAA	1 cut(s)	1031
Bsp13I	TCCGGA	1 cut(s)	406
Bsp19I	CCATGG	1 cut(s)	1239
BspACI	CCGC	3 cut(s)	303, 857, 1469
BspANI	GGCC	3 cut(s)	266, 900, 1112
BspDI	ATCGAT	1 cut(s)	1387
BspEI	TCCGGA	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	111, 384, 966
BspPI	GGATC	6 cut(s)	134, 529, 959, 972, 1184, 1229
BspQI	GCTCTTC	1 cut(s)	581
BspT104I	TTCGAA	1 cut(s)	1031
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	1274
BssAI	RCCGGY	1 cut(s)	157
BssNI	GRCGYC	2 cut(s)	5, 271
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	8 cut(s)	539, 581, 623, 665, 749, 791, 833, 1239
Bst2BI	CACGAG	1 cut(s)	497
Bst2UI	CCWGG	2 cut(s)	519, 1334
Bst4CI	ACNGT	3 cut(s)	42, 316, 392
Bst6I	CTCTTC	3 cut(s)	54, 239, 581
BstACI	GRCGYC	2 cut(s)	5, 271
BstBI	TTCGAA	1 cut(s)	1031
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	1 cut(s)	1134
BstDSI	CCRYGG	3 cut(s)	443, 1239, 1437
BstF5I	GGATG	8 cut(s)	202, 246, 430, 772, 814, 943, 1300, 1378
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstMAI	GTCTC	6 cut(s)	241, 315, 408, 445, 579, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	1270, 1442
BstNI	CCWGG	2 cut(s)	519, 1334
BstSCI	CCNGG	2 cut(s)	517, 1332
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	1363
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	6 cut(s)	139, 526, 568, 610, 652, 964
BstYI	RGATCY	6 cut(s)	139, 526, 568, 610, 652, 964
Bsu15I	ATCGAT	1 cut(s)	1387
BsuRI	GGCC	3 cut(s)	266, 900, 1112
BsuTUI	ATCGAT	1 cut(s)	1387
BtgI	CCRYGG	3 cut(s)	443, 1239, 1437
BtsCI	GGATG	8 cut(s)	202, 246, 430, 772, 814, 943, 1300, 1378
Cac8I	GCNNGC	1 cut(s)	876
CfoI	GCGC	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	264, 1111
ClaI	ATCGAT	1 cut(s)	1387
Csp6I	GTAC	3 cut(s)	502, 640, 992
CviAII	CATG	2 cut(s)	961, 1240
CviQI	GTAC	3 cut(s)	502, 640, 992
DdeI	CTNAG	1 cut(s)	1134
EaeI	YGGCCR	1 cut(s)	898
Eam1104I	CTCTTC	3 cut(s)	54, 239, 581
EarI	CTCTTC	3 cut(s)	54, 239, 581
Eco130I	CCWWGG	8 cut(s)	539, 581, 623, 665, 749, 791, 833, 1239
Eco88I	CYCGRG	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	517, 1332
EcoT14I	CCWWGG	8 cut(s)	539, 581, 623, 665, 749, 791, 833, 1239
ErhI	CCWWGG	8 cut(s)	539, 581, 623, 665, 749, 791, 833, 1239
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	2 cut(s)	964, 1243
FaiI	YATR	7 cut(s)	45, 287, 962, 998, 1000, 1241, 1475
FalI	AAGNNNNNCTT	2 cut(s)	1440, 1472
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	2 cut(s)	960, 1239
Fnu4HI	GCNGC	1 cut(s)	1377
FokI	GGATG	8 cut(s)	209, 253, 437, 779, 821, 950, 1307, 1385
Fsp4HI	GCNGC	1 cut(s)	1377
FspBI	CTAG	1 cut(s)	1182
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	1 cut(s)	1377
GsuI	CTGGAG	1 cut(s)	1160
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	3 cut(s)	266, 900, 1112
HapII	CCGG	3 cut(s)	107, 158, 407
HhaI	GCGC	1 cut(s)	462
Hin1I	GRCGYC	2 cut(s)	5, 271
Hin1II	CATG	2 cut(s)	964, 1243
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	1449
HinfI	GANTC	3 cut(s)	323, 1313, 1320
HpaII	CCGG	3 cut(s)	107, 158, 407
HphI	GGTGA	6 cut(s)	172, 194, 429, 468, 525, 830
Hpy166II	GTNNAC	2 cut(s)	395, 1348
Hpy188I	TCNGA	8 cut(s)	196, 292, 333, 349, 387, 526, 891, 1270
Hpy188III	TCNNGA	4 cut(s)	407, 1004, 1193, 1317
Hpy8I	GTNNAC	2 cut(s)	395, 1348
HpyCH4III	ACNGT	3 cut(s)	42, 316, 392
HpyCH4IV	ACGT	2 cut(s)	271, 558
HpyCH4V	TGCA	4 cut(s)	566, 650, 1175, 1379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1270, 1442
HpyF3I	CTNAG	1 cut(s)	1134
HpySE526I	ACGT	2 cut(s)	271, 558
Hsp92I	GRCGYC	2 cut(s)	5, 271
Hsp92II	CATG	2 cut(s)	964, 1243
HspAI	GCGC	1 cut(s)	460
Kpn2I	TCCGGA	1 cut(s)	406
LguI	GCTCTTC	1 cut(s)	581
LmnI	GCTCC	2 cut(s)	109, 1039
Lsp1109I	GCAGC	1 cut(s)	1363
LweI	GCATC	6 cut(s)	415, 553, 637, 679, 721, 1363
MaeI	CTAG	1 cut(s)	1182
MaeII	ACGT	2 cut(s)	271, 558
MaeIII	GTNAC	7 cut(s)	182, 310, 435, 474, 850, 911, 1004
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	6 cut(s)	139, 526, 568, 610, 652, 964
MluCI	AATT	5 cut(s)	187, 257, 280, 724, 1145
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	298, 1071
MroI	TCCGGA	1 cut(s)	406
MseI	TTAA	4 cut(s)	234, 279, 947, 1358
MspA1I	CMGCKG	1 cut(s)	1353
MspI	CCGG	3 cut(s)	107, 158, 407
MspR9I	CCNGG	2 cut(s)	519, 1334
MunI	CAATTG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	1264
MvaI	CCWGG	2 cut(s)	519, 1334
MwoI	GCNNNNNNNGC	2 cut(s)	1270, 1442
NcoI	CCATGG	1 cut(s)	1239
NlaIII	CATG	2 cut(s)	964, 1243
NlaIV	GGNNCC	3 cut(s)	111, 384, 966
NmeAIII	GCCGAG	1 cut(s)	926
NmuCI	GTSAC	5 cut(s)	182, 435, 474, 911, 1004
NspV	TTCGAA	1 cut(s)	1031
PciSI	GCTCTTC	1 cut(s)	581
PctI	GAATGC	1 cut(s)	1264
PfeI	GAWTC	2 cut(s)	1313, 1320
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	1378
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	517, 1332
PspGI	CCWGG	2 cut(s)	517, 1332
PspN4I	GGNNCC	3 cut(s)	111, 384, 966
PspPI	GGNCC	2 cut(s)	264, 1111
PsrI	GAACNNNNNNTAC	2 cut(s)	485, 517
PsuI	RGATCY	6 cut(s)	139, 526, 568, 610, 652, 964
PvuII	CAGCTG	1 cut(s)	1353
RsaI	GTAC	3 cut(s)	503, 641, 993
RsaNI	GTAC	3 cut(s)	502, 640, 992
SapI	GCTCTTC	1 cut(s)	581
SaqAI	TTAA	4 cut(s)	234, 279, 947, 1358
SatI	GCNGC	1 cut(s)	1377
Sau96I	GGNCC	2 cut(s)	264, 1111
ScaI	AGTACT	1 cut(s)	503
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	519, 1334
SfaNI	GCATC	6 cut(s)	415, 553, 637, 679, 721, 1363
SfcI	CTRYAG	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	1031
SmlI	CTYRAG	1 cut(s)	1154
SmoI	CTYRAG	1 cut(s)	1154
Sse9I	AATT	5 cut(s)	187, 257, 280, 724, 1145
SsiI	CCGC	3 cut(s)	303, 857, 1469
SspI	AATATT	1 cut(s)	1209
SspMI	CTAG	1 cut(s)	1182
StyD4I	CCNGG	2 cut(s)	517, 1332
StyI	CCWWGG	8 cut(s)	539, 581, 623, 665, 749, 791, 833, 1239
TaaI	ACNGT	3 cut(s)	42, 316, 392
TaiI	ACGT	2 cut(s)	274, 561
TaqI	TCGA	5 cut(s)	11, 865, 1031, 1200, 1387
TasI	AATT	5 cut(s)	187, 257, 280, 724, 1145
TatI	WGTACW	1 cut(s)	501
TfiI	GAWTC	2 cut(s)	1313, 1320
Tru1I	TTAA	4 cut(s)	234, 279, 947, 1358
Tru9I	TTAA	4 cut(s)	234, 279, 947, 1358
TseFI	GTSAC	5 cut(s)	182, 435, 474, 911, 1004
TseI	GCWGC	1 cut(s)	1376
Tsp45I	GTSAC	5 cut(s)	182, 435, 474, 911, 1004
TspGWI	ACGGA	4 cut(s)	469, 1192, 1407, 1454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1246
XspI	CTAG	1 cut(s)	1182
ZraI	GACGTC	1 cut(s)	272
ZrmI	AGTACT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.