AT1G34770

Melanoma-associated antigen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006900
Physical Location & Seq
Forward (+)
12746405 .. 12748617
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G34770.5

Sequence Viewer

Length: 714 bp
ATGGCCGACGAAGAAGATTCTCTCTCTCAATTCGATATATCCAAAGAGGAAACGGATAAGTTAGTTTCAGAGGTGATTAGATTCATACTGTTCAAGTTTCACCAAAGCTCAGGAACTCCAATTAAAAGAGAAGATTTGACTCAGATTGTTACTAAGAACTATCGTCAACGAAATCTCGCTACACACGTGATTAACGAAGCGAAGAAGAAGCTCTCTAATGTCTTTGGTTATGATTTGAAAGAACTTCAACGTGCTCGTTCTTCTTCTACTGGTCAATCTAGGCTTCCTCAGTCACAGAGTTCTGTTGACTCGAAATCGTATGTGCTTGTTAGTGAATTGCCGTTGGAAGTGTTTAAGAAACATGTTGTGGATGAAACCACGAGTCCTGTGACTGGCTTTACGTTTGTGGTTCTTGCCATTGTGCAGCTTGCAGGTGGTAAAATCCCTGAAGAAACCCTTTGGCATCATTTGAAGCGAATGGGATTGCATGAAAATGATGAGCATAATCCTGTGTTTGGGAACAACAAGCAGACCCTGGAGACATTAGTCCAACAAAGGTTCTTGCAGAAGGAGAAAGTAAGTGGCCCTGAGGGTAGTACTTTGTTTTACGATCTTGCAGAGAGAGCGCTAGATCCTCAAGTTAGCGAGAAAGTAAAAGATTACATTTCACAGATCCTTAAGAATGATGTAGCAGTTGTAGAGCTTAATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MAGE

Protein Analysis

237

Amino Acids

26.93

Weight (kDa)

5.85

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAGE PF01454 25 - 157 3.4e-27 MAGE homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 422
AclWI GGATC 2 cut(s) 626, 667
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 468
AcvI CACGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 598
AfeI AGCGCT 1 cut(s) 627
AfiI CCNNNNNNNGG 2 cut(s) 392, 515
AflII CTTAAG 1 cut(s) 677
AflIII ACRYGT 2 cut(s) 184, 361
AgsI TTSAA 4 cut(s) 94, 238, 248, 472
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 4 cut(s) 108, 211, 427, 703
AluI AGCT 4 cut(s) 108, 211, 427, 703
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 2 cut(s) 626, 667
AlwNI CAGNNNCTG 1 cut(s) 535
Aor51HI AGCGCT 1 cut(s) 627
AoxI GGCC 2 cut(s) 3, 583
ApeKI GCWGC 1 cut(s) 424
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 2 cut(s) 85, 92
AxyI CCTNAGG 1 cut(s) 588
BauI CACGAG 1 cut(s) 379
BbrPI CACGTG 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 536
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 2 cut(s) 279, 629
BfoI RGCGCY 1 cut(s) 629
BfrI CTTAAG 1 cut(s) 677
BfuAI ACCTGC 1 cut(s) 422
BisI GCNGC 1 cut(s) 425
BlsI GCNGC 1 cut(s) 426
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 584
BmrFI CCNGG 1 cut(s) 536
BmsI GCATC 1 cut(s) 472
BoxI GACNNNNGTC 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 557
Bpu10I CCTNAGC 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 621
BsaAI YACGTR 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 515
Bse1I ACTGG 2 cut(s) 274, 397
Bse21I CCTNAGG 1 cut(s) 588
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 392, 515
BseMII CTCAG 4 cut(s) 123, 155, 302, 579
BseNI ACTGG 2 cut(s) 274, 397
BseXI GCAGC 1 cut(s) 436
BsgI GTGCAG 1 cut(s) 443
BshFI GGCC 2 cut(s) 5, 585
BsiHKAI GWGCWC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 392, 515
BsmAI GTCTC 1 cut(s) 533
BsnI GGCC 2 cut(s) 5, 585
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 610, 631, 672
BspANI GGCC 2 cut(s) 5, 585
BspCNI CTCAG 4 cut(s) 122, 154, 301, 580
BspMI ACCTGC 1 cut(s) 422
BspPI GGATC 2 cut(s) 626, 667
BspTI CTTAAG 1 cut(s) 677
BsrI ACTGG 2 cut(s) 274, 397
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 3 cut(s) 610, 631, 672
BssSI CACGAG 1 cut(s) 379
Bst2BI CACGAG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 677
BstBAI YACGTR 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 5 cut(s) 109, 141, 153, 288, 588
BstF5I GGATG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 3 cut(s) 613, 634, 675
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 3 cut(s) 610, 631, 672
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 1 cut(s) 536
BstNSI RCATGY 1 cut(s) 365
BstPAI GACNNNNGTC 1 cut(s) 545
BstSCI CCNGG 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 436
BstX2I RGATCY 2 cut(s) 631, 672
BstYI RGATCY 2 cut(s) 631, 672
Bsu36I CCTNAGG 1 cut(s) 588
BsuRI GGCC 2 cut(s) 5, 585
BtsCI GGATG 1 cut(s) 376
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 429
CaiI CAGNNNCTG 1 cut(s) 535
CfoI GCGC 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 597
CviAII CATG 2 cut(s) 362, 488
CviJI RGCY 8 cut(s) 5, 108, 211, 283, 396, 427, 585, 703
CviKI_1 RGCY 8 cut(s) 5, 108, 211, 283, 396, 427, 585, 703
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 5 cut(s) 109, 141, 153, 288, 588
DpnI GATC 3 cut(s) 612, 633, 674
DpnII GATC 3 cut(s) 610, 631, 672
EaeI YGGCCR 1 cut(s) 3
Eco47III AGCGCT 1 cut(s) 627
Eco57I CTGAAG 1 cut(s) 468
Eco72I CACGTG 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 534
FaeI CATG 2 cut(s) 365, 491
FaiI YATR 7 cut(s) 38, 86, 231, 321, 363, 489, 504
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 2 cut(s) 361, 487
Fnu4HI GCNGC 1 cut(s) 425
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 425
FspBI CTAG 2 cut(s) 279, 629
GlaI GCGC 1 cut(s) 627
GluI GCNGC 1 cut(s) 425
GsuI CTGGAG 1 cut(s) 557
HaeII RGCGCY 1 cut(s) 629
HaeIII GGCC 2 cut(s) 5, 585
HhaI GCGC 1 cut(s) 628
Hin1II CATG 2 cut(s) 365, 491
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HincII GTYRAC 2 cut(s) 167, 307
HindII GTYRAC 2 cut(s) 167, 307
HinfI GANTC 5 cut(s) 17, 81, 139, 308, 382
HphI GGTGA 2 cut(s) 85, 92
Hpy166II GTNNAC 2 cut(s) 167, 307
Hpy188I TCNGA 2 cut(s) 70, 144
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 2 cut(s) 167, 307
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 3 cut(s) 186, 250, 401
HpyCH4V TGCA 5 cut(s) 424, 431, 487, 565, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 5 cut(s) 109, 141, 153, 288, 588
HpySE526I ACGT 3 cut(s) 186, 250, 401
Hsp92II CATG 2 cut(s) 365, 491
HspAI GCGC 1 cut(s) 626
Kzo9I GATC 3 cut(s) 610, 631, 672
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 279, 629
MaeII ACGT 3 cut(s) 186, 250, 401
MaeIII GTNAC 3 cut(s) 148, 291, 388
MalI GATC 3 cut(s) 612, 633, 674
MboI GATC 3 cut(s) 610, 631, 672
MboII GAAGA 8 cut(s) 23, 26, 143, 214, 217, 252, 255, 461
MflI RGATCY 2 cut(s) 631, 672
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 3 cut(s) 29, 120, 335
MlyI GAGTC 3 cut(s) 133, 302, 391
MmeI TCCRAC 2 cut(s) 324, 574
MnlI CCTC 5 cut(s) 40, 64, 297, 583, 645
MseI TTAA 5 cut(s) 123, 192, 354, 678, 705
MslI CAYNNNNRTG 1 cut(s) 492
MspCI CTTAAG 1 cut(s) 677
MspR9I CCNGG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 1 cut(s) 623
NdeII GATC 3 cut(s) 610, 631, 672
NlaIII CATG 2 cut(s) 365, 491
NmuCI GTSAC 2 cut(s) 291, 388
NspI RCATGY 1 cut(s) 365
PaqCI CACCTGC 1 cut(s) 422
PciI ACATGT 1 cut(s) 361
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 192
PfeI GAWTC 2 cut(s) 17, 81
PkrI GCNGC 1 cut(s) 426
PleI GAGTC 3 cut(s) 133, 302, 390
PmaCI CACGTG 1 cut(s) 187
PmlI CACGTG 1 cut(s) 187
PpsI GAGTC 3 cut(s) 133, 302, 390
Ppu21I YACGTR 1 cut(s) 187
PscI ACATGT 1 cut(s) 361
PshAI GACNNNNGTC 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 534
PspCI CACGTG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 534
PspPI GGNCC 1 cut(s) 584
PstNI CAGNNNCTG 1 cut(s) 535
PsuI RGATCY 2 cut(s) 631, 672
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 5 cut(s) 123, 192, 354, 678, 705
SatI GCNGC 1 cut(s) 425
Sau3AI GATC 3 cut(s) 610, 631, 672
Sau96I GGNCC 1 cut(s) 584
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 3 cut(s) 133, 302, 391
ScrFI CCNGG 1 cut(s) 536
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 2 cut(s) 636, 677
SmoI CTYRAG 2 cut(s) 636, 677
Sse9I AATT 3 cut(s) 29, 120, 335
SspMI CTAG 2 cut(s) 279, 629
StyD4I CCNGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 3 cut(s) 189, 253, 404
TaqI TCGA 2 cut(s) 33, 311
TasI AATT 3 cut(s) 29, 120, 335
TatI WGTACW 1 cut(s) 596
TfiI GAWTC 2 cut(s) 17, 81
Tru1I TTAA 5 cut(s) 123, 192, 354, 678, 705
Tru9I TTAA 5 cut(s) 123, 192, 354, 678, 705
TseFI GTSAC 2 cut(s) 291, 388
TseI GCWGC 1 cut(s) 424
Tsp45I GTSAC 2 cut(s) 291, 388
TspDTI ATGAA 3 cut(s) 73, 387, 504
TspGWI ACGGA 1 cut(s) 68
Vha464I CTTAAG 1 cut(s) 677
XceI RCATGY 1 cut(s) 365
XspI CTAG 2 cut(s) 279, 629
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.