Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010914.1

Orthogroup ID

OG0006900

Physical Location & Seq

Genomic Coordinates Forward (+)

39977 .. 41385

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010914.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgtcaaaccatggtgaagacctctctcaattcgatatctccgttcaggaaaaggacaagctcgtggcggaagtaatccgctacgtgcttttcaagacgcaccacaactccggctgcccaattaggagagaagagctgactcagttgatcaccaaaaactaccgccagcgaaatcttccggtgctaattatcaacgaggcaataaacaagctctccaccatcttcgggtacgaaatgagggagcttcagagggctcggccctcctccaataaccatcagggccgcaattctcaacaaggcgcggcagaggcgaaaacgtatgttatcatgagtaagctgcctgctgaggtgtacaagaagtatgttgaggatgttaatacggctcatcttactggatttactttcgttgtactgagtattgtacatatttcgggtggtaaaatctccgaagagaatctgtggcaacatttgaggcggataggactggatgaaactaacgaaagccatccagttctaggaaacgcgaaacaagcactggaggcacttgtccagcaaaggtatttgcagaaggacaaacaaagtggacctgaaggcaatactttgttatatgagcttgctgagagagctttagattctcaagttactgcaaccatgaaagattacatatcgcaggtatcattagagatccagtttataatggttttattttttcaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAGE

Protein Analysis

239

Amino Acids

27.32

Weight (kDa)

6.72

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34770 AT1G34770 AT1G34770 AT1G34770 AT1G34770 AT1G34770
fragaria_vesca	FvH4_5g37140
malus_domestica	MD08G1184100.v1.1 MD15G1370600.v1.1
prunus_persica	Prupe.1G518300_v2.0.a1
pyrus_communis	pycom08g15780 pycom15g33220 pycom15g33230
rosa_chinensis	RchiOBHm_Chr7g0238691 RchiOBHm_Chr7g0243981
rosa_laevigata	RLG00000000817
rosa_multiflora	Rmu_co8037164.1_g000001 Rmu_sc0006110.1_g000004 Rmu_sc0010914.1_g000013
rosa_roxburghii	Rroxscaffold_3G00221600
rosa_rugosa	Rorug07G0323100
rosa_samantha	Rh7AG477500 Rh7BG448800 Rh7CG495500 Rh7DG462400
rosa_wichuraiana	Rw7G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	661
AccII	CGCG	2 cut(s)	302, 524
AciI	CCGC	6 cut(s)	68, 79, 163, 283, 302, 475
AclWI	GGATC	1 cut(s)	679
AcuI	CTGAAG	2 cut(s)	230, 609
AfaI	GTAC	4 cut(s)	230, 353, 411, 423
AfiI	CCNNNNNNNGG	2 cut(s)	225, 515
AgsI	TTSAA	2 cut(s)	94, 713
AluBI	AGCT	7 cut(s)	61, 136, 211, 244, 337, 613, 626
AluI	AGCT	7 cut(s)	61, 136, 211, 244, 337, 613, 626
AlwI	GGATC	1 cut(s)	679
AoxI	GGCC	2 cut(s)	257, 280
ApeKI	GCWGC	2 cut(s)	114, 337
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	3 cut(s)	258, 280, 584
AsuHPI	GGTGA	2 cut(s)	26, 142
AvaII	GGWCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	24
BbvCI	CCTCAGC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	101, 324
BccI	CCATC	3 cut(s)	227, 282, 513
BceAI	ACGGC	1 cut(s)	396
BclI	TGATCA	1 cut(s)	147
BfaI	CTAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	4 cut(s)	115, 283, 303, 338
BlsI	GCNGC	4 cut(s)	116, 284, 304, 339
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	3 cut(s)	258, 280, 584
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 515
Bse1I	ACTGG	5 cut(s)	397, 489, 509, 540, 688
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	3 cut(s)	376, 493, 505
BseLI	CCNNNNNNNGG	2 cut(s)	225, 515
BseMII	CTCAG	4 cut(s)	155, 336, 404, 609
BseNI	ACTGG	5 cut(s)	397, 489, 509, 540, 688
BseRI	GAGGAG	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	101, 324
Bsh1236I	CGCG	2 cut(s)	302, 524
BshFI	GGCC	2 cut(s)	259, 282
BsiSI	CCGG	2 cut(s)	111, 179
BslI	CCNNNNNNNGG	2 cut(s)	225, 515
BsnI	GGCC	2 cut(s)	259, 282
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp1407I	TGTACA	2 cut(s)	351, 421
Bsp143I	GATC	2 cut(s)	147, 684
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	6 cut(s)	68, 79, 163, 283, 302, 475
BspANI	GGCC	2 cut(s)	259, 282
BspCNI	CTCAG	4 cut(s)	154, 337, 405, 610
BspFNI	CGCG	2 cut(s)	302, 524
BspHI	TCATGA	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	1 cut(s)	679
BspQI	GCTCTTC	1 cut(s)	126
BsrGI	TGTACA	2 cut(s)	351, 421
BsrI	ACTGG	5 cut(s)	397, 489, 509, 540, 688
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	147, 684
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	62
Bst6I	CTCTTC	2 cut(s)	126, 444
BstAUI	TGTACA	2 cut(s)	351, 421
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	3 cut(s)	167, 342, 615
BstDEI	CTNAG	4 cut(s)	141, 345, 413, 618
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	376, 493, 505
BstFNI	CGCG	2 cut(s)	302, 524
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	150, 687
BstMBI	GATC	2 cut(s)	147, 684
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 530, 539, 623
BstUI	CGCG	2 cut(s)	302, 524
BstV1I	GCAGC	2 cut(s)	101, 324
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	259, 282
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	376, 493, 505
BtsIMutI	CAGTG	1 cut(s)	533
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	3 cut(s)	167, 342, 615
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	3 cut(s)	258, 280, 584
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	4 cut(s)	229, 352, 410, 422
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	3 cut(s)	11, 328, 652
CviQI	GTAC	4 cut(s)	229, 352, 410, 422
DdeI	CTNAG	4 cut(s)	141, 345, 413, 618
DpnI	GATC	2 cut(s)	149, 686
DpnII	GATC	2 cut(s)	147, 684
Eam1104I	CTCTTC	2 cut(s)	126, 444
EarI	CTCTTC	2 cut(s)	126, 444
EciI	GGCGGA	2 cut(s)	83, 490
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	2 cut(s)	230, 609
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	3 cut(s)	14, 331, 655
FatI	CATG	3 cut(s)	10, 327, 651
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	115, 283, 303, 338
FokI	GGATG	3 cut(s)	383, 492, 500
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	4 cut(s)	115, 283, 303, 338
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	4 cut(s)	115, 283, 303, 338
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	2 cut(s)	259, 282
HapII	CCGG	2 cut(s)	111, 179
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	14, 331, 655
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	3 cut(s)	139, 454, 632
HpaII	CCGG	2 cut(s)	111, 179
HphI	GGTGA	2 cut(s)	26, 142
Hpy166II	GTNNAC	2 cut(s)	352, 584
Hpy188I	TCNGA	2 cut(s)	249, 448
Hpy188III	TCNNGA	3 cut(s)	47, 94, 328
Hpy8I	GTNNAC	2 cut(s)	352, 584
HpyAV	CCTTC	2 cut(s)	562, 584
HpyCH4IV	ACGT	2 cut(s)	84, 317
HpyCH4V	TGCA	2 cut(s)	565, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 530, 539, 623
HpyF3I	CTNAG	4 cut(s)	141, 345, 413, 618
HpySE526I	ACGT	2 cut(s)	84, 317
Hsp92II	CATG	3 cut(s)	14, 331, 655
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	147, 684
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	2 cut(s)	101, 324
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	2 cut(s)	84, 317
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	2 cut(s)	149, 686
MboI	GATC	2 cut(s)	147, 684
MboII	GAAGA	5 cut(s)	29, 143, 167, 214, 461
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	4 cut(s)	29, 120, 186, 286
MlyI	GAGTC	1 cut(s)	133
MseI	TTAA	1 cut(s)	375
MspI	CCGG	2 cut(s)	111, 179
MvnI	CGCG	2 cut(s)	302, 524
MwoI	GCNNNNNNNGC	4 cut(s)	308, 530, 539, 623
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	2 cut(s)	147, 684
NlaIII	CATG	3 cut(s)	14, 331, 655
NmeAIII	GCCGAG	1 cut(s)	235
PagI	TCATGA	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	454, 632
PkrI	GCNGC	4 cut(s)	116, 284, 304, 339
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	695
PspPI	GGNCC	3 cut(s)	258, 280, 584
PsuI	RGATCY	1 cut(s)	684
RsaI	GTAC	4 cut(s)	230, 353, 411, 423
RsaNI	GTAC	4 cut(s)	229, 352, 410, 422
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	4 cut(s)	115, 283, 303, 338
Sau3AI	GATC	2 cut(s)	147, 684
Sau96I	GGNCC	3 cut(s)	258, 280, 584
SchI	GAGTC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
Sse9I	AATT	4 cut(s)	29, 120, 186, 286
SsiI	CCGC	6 cut(s)	68, 79, 163, 283, 302, 475
SspMI	CTAG	1 cut(s)	515
StyI	CCWWGG	1 cut(s)	10
TaiI	ACGT	2 cut(s)	87, 320
TaqI	TCGA	1 cut(s)	33
TasI	AATT	4 cut(s)	29, 120, 186, 286
TatI	WGTACW	3 cut(s)	351, 409, 421
TauI	GCSGC	2 cut(s)	285, 305
TfiI	GAWTC	2 cut(s)	454, 632
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	2 cut(s)	114, 337
TspDTI	ATGAA	2 cut(s)	504, 668
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	584
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.