Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006900

Physical Location & Seq

Genomic Coordinates Forward (+)

15558684 .. 15561924

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15780.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCGCAACCAGTTGTAGATCTCTCTCAATTCGACATCTCCAAAGAGGAAAAGGACAAGCTTGTAGCGGAAGTAATCCGATACGTGCTGTTCAAGACGCACCACAGCTCGGGGTGTCCGATAAAGAGGGAAGAGCTCACCCAGCTGCTCACCAAGAACTACCGCCAGCGCAATCTTCCTACTTTCATCATCAACGAGGCCATACAGAAGTTGTCCTCCATTTTCGGGTACGAAATGCGGGAGCTTCAGAGGTCTCGTCCTTCTTCCGCTAATCAGGGACGCATTTCGCAACAGAGTGCTGCGGAGGCAAAATCCTATATCATCACGAGTAAGCTTCCTTCTGATGTGTATAAGAAGTATGTCTTGAACGACCATGATAGTACGGTTCCTCTCAATGGTTTCACTTTTGTCGTACTGAGTCTTGTACATATTTCCGGTGGTAAAATGACTGAAGAGGATCTTTGGCGTAATTTGAGACGAATGGGATTGGACGAAAGCAATGAAAACCATCCAGTCCTAGGAAACATAAAGCAAGCACTGGACACACTTGTCCAGCAAAGATATTTGCAGAAAGACAAAGTAAGTGGACCTGAAGGCAATACTTTGTTTTTTGAGCTTGCGGAGAGAGCTTTAGATGCACCAATTAGTGAGAGCACTAAAGCACACATATCAGAGATTGTGAACAAAGAGGTTGTCTCCGTGGATGTCGACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAGE

Protein Analysis

239

Amino Acids

27.01

Weight (kDa)

6.11

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34770 AT1G34770 AT1G34770 AT1G34770 AT1G34770 AT1G34770
fragaria_vesca	FvH4_5g37140
malus_domestica	MD08G1184100.v1.1 MD15G1370600.v1.1
prunus_persica	Prupe.1G518300_v2.0.a1
pyrus_communis	pycom08g15780 pycom15g33220 pycom15g33230
rosa_chinensis	RchiOBHm_Chr7g0238691 RchiOBHm_Chr7g0243981
rosa_laevigata	RLG00000000817
rosa_multiflora	Rmu_co8037164.1_g000001 Rmu_sc0006110.1_g000004 Rmu_sc0010914.1_g000013
rosa_roxburghii	Rroxscaffold_3G00221600
rosa_rugosa	Rorug07G0323100
rosa_samantha	Rh7AG477500 Rh7BG448800 Rh7CG495500 Rh7DG462400
rosa_wichuraiana	Rw7G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	6 cut(s)	68, 163, 238, 267, 302, 620
AclWI	GGATC	1 cut(s)	465
AcuI	CTGAAG	3 cut(s)	230, 471, 612
AfaI	GTAC	4 cut(s)	230, 382, 414, 426
AfiI	CCNNNNNNNGG	4 cut(s)	109, 225, 395, 518
AgsI	TTSAA	2 cut(s)	94, 367
AluBI	AGCT	8 cut(s)	61, 108, 136, 145, 244, 334, 616, 629
AluI	AGCT	8 cut(s)	61, 108, 136, 145, 244, 334, 616, 629
Alw21I	GWGCWC	2 cut(s)	138, 656
Alw26I	GTCTC	3 cut(s)	258, 469, 700
AlwI	GGATC	1 cut(s)	465
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	145, 299
ArsI	GACNNNNNNTTYG	2 cut(s)	678, 710
AspA2I	CCTAGG	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	130, 142
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	587
AvrII	CCTAGG	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	138
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
BauI	CACGAG	1 cut(s)	325
Bbv12I	GWGCWC	2 cut(s)	138, 656
BbvI	GCAGC	2 cut(s)	132, 286
BccI	CCATC	1 cut(s)	516
BcoDI	GTCTC	3 cut(s)	258, 469, 700
BfaI	CTAG	2 cut(s)	518, 715
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	2 cut(s)	146, 300
BlnI	CCTAGG	1 cut(s)	517
BlsI	GCNGC	2 cut(s)	147, 301
Bme18I	GGWCC	1 cut(s)	587
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	1 cut(s)	387
BmsI	GCATC	1 cut(s)	625
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
BsaAI	YACGTR	1 cut(s)	85
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	517, 699
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 225, 395, 518
Bse1I	ACTGG	3 cut(s)	11, 512, 543
Bse3DI	GCAATG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	517, 699
BseGI	GGATG	2 cut(s)	508, 709
BseLI	CCNNNNNNNGG	4 cut(s)	109, 225, 395, 518
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	3 cut(s)	11, 512, 543
BseXI	GCAGC	2 cut(s)	132, 286
BseYI	CCCAGC	1 cut(s)	141
BshFI	GGCC	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	138, 656
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	4 cut(s)	109, 225, 395, 518
BsmAI	GTCTC	3 cut(s)	258, 469, 700
BsmBI	CGTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	138, 656
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	19, 457
BspACI	CCGC	6 cut(s)	68, 163, 238, 267, 302, 620
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	465
BspQI	GCTCTTC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	3 cut(s)	11, 512, 543
BssECI	CCNNGG	2 cut(s)	517, 699
BssMI	GATC	2 cut(s)	19, 457
BssSI	CACGAG	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	517
Bst2BI	CACGAG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	2 cut(s)	126, 447
BstAUI	TGTACA	1 cut(s)	424
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	3 cut(s)	167, 534, 618
BstDEI	CTNAG	1 cut(s)	416
BstDSI	CCRYGG	1 cut(s)	699
BstF5I	GGATG	2 cut(s)	508, 709
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	2 cut(s)	22, 460
BstMAI	GTCTC	3 cut(s)	258, 469, 700
BstMBI	GATC	2 cut(s)	19, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 305, 626, 635
BstV1I	GCAGC	2 cut(s)	132, 286
BstX2I	RGATCY	2 cut(s)	19, 457
BstYI	RGATCY	2 cut(s)	19, 457
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	699
BtsCI	GGATG	2 cut(s)	508, 709
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	3 cut(s)	167, 534, 618
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	587
CseI	GACGC	2 cut(s)	106, 288
Csp6I	GTAC	4 cut(s)	229, 381, 413, 425
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	9 cut(s)	61, 108, 136, 145, 200, 244, 334, 616, 629
CviKI_1	RGCY	9 cut(s)	61, 108, 136, 145, 200, 244, 334, 616, 629
CviQI	GTAC	4 cut(s)	229, 381, 413, 425
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	2 cut(s)	21, 459
DpnII	GATC	2 cut(s)	19, 457
DrdI	GACNNNNNNGTC	1 cut(s)	548
DseDI	GACNNNNNNGTC	1 cut(s)	548
Eam1104I	CTCTTC	2 cut(s)	126, 447
EarI	CTCTTC	2 cut(s)	126, 447
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	587
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	3 cut(s)	230, 471, 612
Eco88I	CYCGRG	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	517
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	1 cut(s)	377
FaiI	YATR	8 cut(s)	203, 318, 351, 360, 375, 429, 527, 668
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 444, 476
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	1 cut(s)	373
FauI	CCCGC	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	2 cut(s)	146, 300
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	146, 300
FspBI	CTAG	2 cut(s)	518, 715
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	146, 300
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	2 cut(s)	106, 288
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HindIII	AAGCTT	2 cut(s)	59, 332
HinfI	GANTC	1 cut(s)	418
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	2 cut(s)	130, 142
Hpy166II	GTNNAC	3 cut(s)	587, 682, 709
Hpy188I	TCNGA	5 cut(s)	80, 120, 249, 343, 673
Hpy188III	TCNNGA	3 cut(s)	94, 325, 364
Hpy8I	GTNNAC	3 cut(s)	587, 682, 709
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	3 cut(s)	270, 348, 587
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	568, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 305, 626, 635
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	19, 457
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	9 cut(s)	24, 155, 179, 260, 448, 524, 525, 566, 603
Lsp1109I	GCAGC	2 cut(s)	132, 286
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	2 cut(s)	518, 715
MaeII	ACGT	1 cut(s)	84
MalI	GATC	2 cut(s)	21, 459
MboI	GATC	2 cut(s)	19, 457
MboII	GAAGA	4 cut(s)	143, 167, 255, 464
MflI	RGATCY	2 cut(s)	19, 457
MhlI	GDGCHC	2 cut(s)	138, 656
MluCI	AATT	3 cut(s)	29, 469, 642
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	9 cut(s)	40, 120, 190, 226, 243, 298, 399, 448, 682
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	142, 305, 626, 635
NdeII	GATC	2 cut(s)	19, 457
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	147, 301
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
Ppu21I	YACGTR	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	19, 457
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	4 cut(s)	230, 382, 414, 426
RsaNI	GTAC	4 cut(s)	229, 381, 413, 425
SacI	GAGCTC	1 cut(s)	138
SalI	GTCGAC	1 cut(s)	707
SapI	GCTCTTC	1 cut(s)	126
SatI	GCNGC	2 cut(s)	146, 300
Sau3AI	GATC	2 cut(s)	19, 457
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	1 cut(s)	427
SduI	GDGCHC	2 cut(s)	138, 656
SfaNI	GCATC	1 cut(s)	625
SinI	GGWCC	1 cut(s)	587
Sse9I	AATT	3 cut(s)	29, 469, 642
SsiI	CCGC	6 cut(s)	68, 163, 238, 267, 302, 620
SspMI	CTAG	2 cut(s)	518, 715
SstI	GAGCTC	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	33, 708
TasI	AATT	3 cut(s)	29, 469, 642
TatI	WGTACW	1 cut(s)	424
TscAI	CASTG	1 cut(s)	543
TseI	GCWGC	2 cut(s)	145, 299
TspDTI	ATGAA	2 cut(s)	175, 516
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	587
XmaJI	CCTAGG	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	708
XspI	CTAG	2 cut(s)	518, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.