pycom15g33230

Melanoma-associated antigen

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
32521581 .. 32522086
506 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g33230.2

Sequence Viewer

Length: 243 bp
ATGACTGAAGGCAGGCAAGCATTTATTTTCTGTTACCTTGTGTCGTGTTGTGAGAGAACCAACTCTTGCTGTCCTGGTGGAACTGCAGCGGATCTTTGGCGTAATTTGAGACGAATGGGATTGGACGAAAGCAATGAAAACCATCCAGTTCTAGGAAACATAAAGCAAGCACTGGACACACTTGTCCAGCAAAGTTTGGCTTGTTATGGATTGTTTATTTGCAGTTCTTTTGTATCGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

8.84

Weight (kDa)

5.62

Isoelectric Point (pI)

62.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 152
AjnI CCWGG 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 146, 177
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 139
BseNI ACTGG 2 cut(s) 146, 177
BseXI GCAGC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 1 cut(s) 89
BspHI TCATGA 1 cut(s) 239
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 2 cut(s) 146, 177
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 14, 18, 168
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 3 cut(s) 14, 18, 168
CciI TCATGA 1 cut(s) 239
CviAII CATG 1 cut(s) 240
CviJI RGCY 1 cut(s) 200
CviKI_1 RGCY 1 cut(s) 200
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 1 cut(s) 243
FaiI YATR 3 cut(s) 161, 207, 241
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FatI CATG 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 152
GluI GCNGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 243
Hpy188III TCNNGA 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 86, 222
Hsp92II CATG 1 cut(s) 243
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 60, 87, 158, 159, 200
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MflI RGATCY 1 cut(s) 91
MluCI AATT 1 cut(s) 103
MspA1I CMGCKG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
NdeII GATC 1 cut(s) 91
NlaIII CATG 1 cut(s) 243
PagI TCATGA 1 cut(s) 239
PkrI GCNGC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PstI CTGCAG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 91
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 75
SetI ASST 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 84
Sse9I AATT 1 cut(s) 103
SsiI CCGC 1 cut(s) 89
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 73
TasI AATT 1 cut(s) 103
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 177
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.