Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006900

Physical Location & Seq

Genomic Coordinates Forward (+)

42574490 .. 42578229

Gene Structure 3740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G518300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCACAACCGGTGGATGACCTGTCTCAATTCGATATCTCCAAAGAGGAAAAGGACAAGCTTGTAGCAGAAGTAATCCGCTACGTGCTGTTCAAGACGCACCACAACTCGGGCTGTCCAATAAAGAGGGAAGAGCTCACTCAGCTGCTCACCAAAAACTATCGTCAGCGAAATCTTCCCACGCTCGTCATCAACGAGGCTATACAGAAGCTTTCCACCATCTTTGGCTACGAAATGAGGGAGCTTCAAAGGTCTCGTCCCTCTTCCACTAATCAGGGACGCTTTTCCCAACAGAGTGTTGCAGAGGCAAAATCCTATGTCATTTTGAGTAAACTTCCTTCGGATGTGTATAAGAAGTATGTTGAGGATGATCGTACGGCTCCTCTCACTGGTTTCACTTTTGTCGTACTAAGTATTGTACATATTTCTGGTGGTAAAACCACTGAAGAGGATCTTTGGCGTCATTTGAGACGGATGGGATTGGATGAAAAAAATGAAAGCCATCCAGTCCTAGGAAACATAAAACAAGCACTGGAGACACTTGTCCAGCAAAGATATTTGCAGAAAGACAAAGTAAGTGGACCTGAAGGCCATACTTTGTTCTATGAGCTTGCTGAGAGAGCTTTAGATGCGCCAGTTAGTGACAGCATTAAAGCGTACATAGCACAGATTGTAAATAAAGAAGTTGGCACGGCAGATGCAGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAGE

Protein Analysis

237

Amino Acids

26.87

Weight (kDa)

6.33

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34770 AT1G34770 AT1G34770 AT1G34770 AT1G34770 AT1G34770
fragaria_vesca	FvH4_5g37140
malus_domestica	MD08G1184100.v1.1 MD15G1370600.v1.1
prunus_persica	Prupe.1G518300_v2.0.a1
pyrus_communis	pycom08g15780 pycom15g33220 pycom15g33230
rosa_chinensis	RchiOBHm_Chr7g0238691 RchiOBHm_Chr7g0243981
rosa_laevigata	RLG00000000817
rosa_multiflora	Rmu_co8037164.1_g000001 Rmu_sc0006110.1_g000004 Rmu_sc0010914.1_g000013
rosa_roxburghii	Rroxscaffold_3G00221600
rosa_rugosa	Rorug07G0323100
rosa_samantha	Rh7AG477500 Rh7BG448800 Rh7CG495500 Rh7DG462400
rosa_wichuraiana	Rw7G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	459
AcuI	CTGAAG	2 cut(s)	465, 606
AcyI	GRCGYC	1 cut(s)	460
AfaI	GTAC	4 cut(s)	376, 408, 420, 659
AfiI	CCNNNNNNNGG	3 cut(s)	109, 389, 512
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	94, 248
AluBI	AGCT	7 cut(s)	61, 136, 145, 211, 244, 610, 623
AluI	AGCT	7 cut(s)	61, 136, 145, 211, 244, 610, 623
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	4 cut(s)	30, 258, 463, 530
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	589
ApeKI	GCWGC	1 cut(s)	145
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AsiGI	ACCGGT	1 cut(s)	10
AspA2I	CCTAGG	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	581
AvrII	CCTAGG	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	138
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	3 cut(s)	227, 469, 510
BceAI	ACGGC	2 cut(s)	393, 708
BcoDI	GTCTC	4 cut(s)	30, 258, 463, 530
BfaI	CTAG	2 cut(s)	512, 709
BisI	GCNGC	1 cut(s)	146
BlnI	CCTAGG	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	1 cut(s)	381
BmsI	GCATC	2 cut(s)	619, 688
BoxI	GACNNNNGTC	1 cut(s)	542
BpmI	CTGGAG	1 cut(s)	554
BsaAI	YACGTR	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 389, 512
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	4 cut(s)	394, 506, 537, 635
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	6 cut(s)	22, 349, 373, 480, 490, 502
BseLI	CCNNNNNNNGG	3 cut(s)	109, 389, 512
BseMII	CTCAG	2 cut(s)	155, 606
BseNI	ACTGG	4 cut(s)	394, 506, 537, 635
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	132
BshFI	GGCC	1 cut(s)	591
BshTI	ACCGGT	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	11
BsiWI	CGTACG	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	243, 291
BslI	CCNNNNNNNGG	3 cut(s)	109, 389, 512
BsmAI	GTCTC	4 cut(s)	30, 258, 463, 530
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	2 cut(s)	243, 291
BsnI	GGCC	1 cut(s)	591
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	370, 451
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	591
BspCNI	CTCAG	2 cut(s)	154, 607
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	459
BspQI	GCTCTTC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	4 cut(s)	394, 506, 537, 635
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	2 cut(s)	370, 451
BssNI	GRCGYC	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	511
Bst6I	CTCTTC	3 cut(s)	126, 268, 441
BstACI	GRCGYC	1 cut(s)	460
BstAUI	TGTACA	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	3 cut(s)	141, 410, 615
BstF5I	GGATG	6 cut(s)	22, 349, 373, 480, 490, 502
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	2 cut(s)	373, 454
BstMAI	GTCTC	4 cut(s)	30, 258, 463, 530
BstMBI	GATC	2 cut(s)	370, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 620, 629, 662
BstPAI	GACNNNNGTC	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	591
BtsCI	GGATG	6 cut(s)	22, 349, 373, 480, 490, 502
BtsIMutI	CAGTG	3 cut(s)	387, 441, 530
Cac8I	GCNNGC	1 cut(s)	612
CfoI	GCGC	1 cut(s)	634
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	581
CseI	GACGC	3 cut(s)	106, 288, 449
Csp6I	GTAC	4 cut(s)	375, 407, 419, 658
CspAI	ACCGGT	1 cut(s)	10
CspCI	CAANNNNNGTGG	4 cut(s)	205, 240, 559, 594
CviQI	GTAC	4 cut(s)	375, 407, 419, 658
DdeI	CTNAG	3 cut(s)	141, 410, 615
DpnI	GATC	2 cut(s)	372, 453
DpnII	GATC	2 cut(s)	370, 451
Eam1104I	CTCTTC	3 cut(s)	126, 268, 441
EarI	CTCTTC	3 cut(s)	126, 268, 441
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	581
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	465, 606
Eco88I	CYCGRG	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	511
Esp3I	CGTCTC	1 cut(s)	463
FaiI	YATR	9 cut(s)	203, 318, 351, 360, 423, 521, 594, 606, 662
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	243, 291
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	6 cut(s)	29, 356, 380, 487, 489, 497
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	2 cut(s)	512, 709
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	1 cut(s)	591
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	3 cut(s)	106, 288, 449
HhaI	GCGC	1 cut(s)	634
Hin1I	GRCGYC	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HindIII	AAGCTT	2 cut(s)	59, 209
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	332, 581
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	332, 581
HpyAV	CCTTC	2 cut(s)	348, 581
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	302, 562, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 620, 629, 662
HpyF3I	CTNAG	3 cut(s)	141, 410, 615
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	460
HspAI	GCGC	1 cut(s)	632
Kzo9I	GATC	2 cut(s)	370, 451
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	2 cut(s)	241, 385
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	2 cut(s)	619, 688
MaeI	CTAG	2 cut(s)	512, 709
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	3, 641
MalI	GATC	2 cut(s)	372, 453
MboI	GATC	2 cut(s)	370, 451
MboII	GAAGA	4 cut(s)	143, 167, 255, 458
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	9 cut(s)	40, 120, 190, 231, 271, 298, 358, 393, 442
MseI	TTAA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	142, 620, 629, 662
NdeII	GATC	2 cut(s)	370, 451
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	2 cut(s)	3, 641
PciSI	GCTCTTC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
Pfl23II	CGTACG	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	147
Ppu21I	YACGTR	1 cut(s)	85
PshAI	GACNNNNGTC	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	138
PspLI	CGTACG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	4 cut(s)	376, 408, 420, 659
RsaNI	GTAC	4 cut(s)	375, 407, 419, 658
SacI	GAGCTC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	370, 451
Sau96I	GGNCC	1 cut(s)	581
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	619, 688
SinI	GGWCC	1 cut(s)	581
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	2 cut(s)	512, 709
SstI	GAGCTC	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	511
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	29
TatI	WGTACW	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	3 cut(s)	394, 448, 537
TseFI	GTSAC	2 cut(s)	3, 641
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	2 cut(s)	3, 641
TspDTI	ATGAA	2 cut(s)	501, 510
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	3 cut(s)	394, 448, 537
VpaK11BI	GGWCC	1 cut(s)	581
XmaJI	CCTAGG	1 cut(s)	511
XspI	CTAG	2 cut(s)	512, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.