Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Forward (+)

16870221 .. 16873427

Gene Structure 3207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G44575.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTCAAACCATGCTGCTTACTTCAGGCGTCACCGCCGGCCATTTTTTGAGGAACAAGAGCCCTTTGGCTCAGCCCAAAGTTCACCATCTCTTCCTCTCTGGAAACTCTCCGGTTGCACTACCATCTAGGAGACAATCATTCGTTCCTCTCGCTCTCTTCAAACCCAAAACCAAAGCTGCTCCTAAAAAGGTTGAGAAGCCGAAGAGCAAGGTTGAGGATGGCATCTTTGGAACGTCTGGTGGGATTGGTTTCACAAAGGCGAATGAGCTATTCGTTGGTCGTGTTGCTATGATCGGTTTCGCTGCATCGTTGCTTGGTGAGGCGTTGACGGGAAAAGGGATATTAGCTCAGCTGAATCTGGAGACAGGGATACCGATTTACGAAGCAGAGCCATTGCTTCTCTTCTTCATCTTGTTCACTCTGTTGGGAGCCATTGGAGCTCTCGGAGACAGAGGAAAATTCGTCGACGATCCTCCCACCGGGCTCGAGAAAGCCGTCATTCCTCCCGGCAAAAACGTCCGATCTGCCCTCGGTCTCAAAGAACAAGGTCCATTGTTTGGGTTCACGAAGGCGAACGAGTTATTCGTAGGAAGATTGGCACAGTTGGGAATAGCATTTTCACTGATAGGAGAGATTATTACCGGGAAAGGAGCATTAGCTCAACTCAACATTGAGACCGGTATACCAATTCAAGATATCGAACCACTTGTCCTCTTAAACGTTGCTTTCTTCTTCTTCGCTGCCATTAATCCTGGTAATGGAAAATTCATCACCGATGATGGTGAAGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006996 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010196 GO:0016020 GO:0016043 GO:0016168 GO:0019840 GO:0019904 GO:0030076 GO:0031409 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051179 GO:0051234 GO:0051738 GO:0055035 GO:0055085 GO:0061024 GO:0071840 GO:0080167 GO:0097159 GO:0098796 GO:0098807 GO:1901363 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

265

Amino Acids

28.01

Weight (kDa)

9.25

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	85 - 209	2.8e-08	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	560
AccI	GTMKAC	2 cut(s)	468, 685
AciI	CCGC	1 cut(s)	36
AclI	AACGTT	1 cut(s)	723
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	461, 767
AcuI	CTGAAG	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	3 cut(s)	482, 560, 761
AgeI	ACCGGT	1 cut(s)	680
AgsI	TTSAA	2 cut(s)	163, 695
AjnI	CCWGG	1 cut(s)	754
AloI	GAACNNNNNNTCC	2 cut(s)	696, 728
AluBI	AGCT	7 cut(s)	179, 271, 350, 355, 443, 662, 795
AluI	AGCT	7 cut(s)	179, 271, 350, 355, 443, 662, 795
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	5 cut(s)	127, 359, 444, 542, 671
AlwI	GGATC	1 cut(s)	467
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	4 cut(s)	16, 179, 305, 743
ApoI	RAATTY	2 cut(s)	461, 767
ArsI	GACNNNNNNTTYG	2 cut(s)	696, 728
AseI	ATTAAT	1 cut(s)	750
AsiGI	ACCGGT	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	3 cut(s)	484, 510, 646
AsuHPI	GGTGA	5 cut(s)	25, 77, 332, 766, 797
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	551
BanII	GRGCYC	3 cut(s)	65, 445, 489
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	4 cut(s)	3, 166, 292, 730
BccI	CCATC	4 cut(s)	96, 133, 215, 776
BceAI	ACGGC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	756
BciVI	GTATCC	1 cut(s)	366
BcnI	CCSGG	3 cut(s)	484, 510, 646
BcoDI	GTCTC	5 cut(s)	127, 359, 444, 542, 671
BfaI	CTAG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	4 cut(s)	17, 180, 306, 744
BlpI	GCTNAGC	2 cut(s)	72, 351
BlsI	GCNGC	4 cut(s)	18, 181, 307, 745
Bme1390I	CCNGG	4 cut(s)	484, 510, 646, 756
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	4 cut(s)	484, 510, 646, 756
BmsI	GCATC	2 cut(s)	234, 317
BpmI	CTGGAG	1 cut(s)	383
Bpu1102I	GCTNAGC	2 cut(s)	72, 351
BpuMI	CCSGG	3 cut(s)	484, 510, 646
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	2 cut(s)	542, 671
BsaJI	CCNNGG	1 cut(s)	532
BsaWI	WCCGGW	2 cut(s)	112, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 560, 761
Bse118I	RCCGGY	2 cut(s)	38, 680
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	482, 560, 761
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	86, 365
BseXI	GCAGC	4 cut(s)	3, 166, 292, 730
BshFI	GGCC	1 cut(s)	42
BshTI	ACCGGT	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	6 cut(s)	39, 113, 483, 510, 645, 681
BslI	CCNNNNNNNGG	3 cut(s)	482, 560, 761
BsmAI	GTCTC	5 cut(s)	127, 359, 444, 542, 671
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	2 cut(s)	542, 671
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	3 cut(s)	65, 445, 489
Bsp143I	GATC	3 cut(s)	294, 472, 524
Bsp1720I	GCTNAGC	2 cut(s)	72, 351
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	85, 364
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	200
BspTNI	GGTCTC	2 cut(s)	542, 671
BsrDI	GCAATG	1 cut(s)	395
BsrFI	RCCGGY	2 cut(s)	38, 680
BssAI	RCCGGY	2 cut(s)	38, 680
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	3 cut(s)	294, 472, 524
BssNAI	GTATAC	1 cut(s)	686
BssNI	GRCGYC	1 cut(s)	30
Bst1107I	GTATAC	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	606
Bst6I	CTCTTC	4 cut(s)	98, 164, 200, 410
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	72, 351
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	297, 475, 527
BstMAI	GTCTC	5 cut(s)	127, 359, 444, 542, 671
BstMBI	GATC	3 cut(s)	294, 472, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	1 cut(s)	756
BstSCI	CCNGG	4 cut(s)	482, 508, 644, 754
BstV1I	GCAGC	4 cut(s)	3, 166, 292, 730
BstZ17I	GTATAC	1 cut(s)	686
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	623
Cac8I	GCNNGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	38, 680
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	1 cut(s)	19
CspAI	ACCGGT	1 cut(s)	680
CviAII	CATG	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	72, 351
DpnI	GATC	3 cut(s)	296, 474, 526
DpnII	GATC	3 cut(s)	294, 472, 524
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	4 cut(s)	98, 164, 200, 410
EarI	CTCTTC	4 cut(s)	98, 164, 200, 410
Ecl136II	GAGCTC	1 cut(s)	443
Eco24I	GRGCYC	3 cut(s)	65, 445, 489
Eco31I	GGTCTC	2 cut(s)	542, 671
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	551
Eco53kI	GAGCTC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	700
EcoT38I	GRGCYC	3 cut(s)	65, 445, 489
FaeI	CATG	1 cut(s)	16
FaiI	YATR	3 cut(s)	14, 293, 686
FatI	CATG	1 cut(s)	12
FblI	GTMKAC	2 cut(s)	468, 685
Fnu4HI	GCNGC	4 cut(s)	17, 180, 306, 744
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	3 cut(s)	65, 445, 489
Fsp4HI	GCNGC	4 cut(s)	17, 180, 306, 744
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	17, 180, 306, 744
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	6 cut(s)	39, 113, 483, 510, 645, 681
HgaI	GACGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	16
HincII	GTYRAC	2 cut(s)	330, 469
HindII	GTYRAC	2 cut(s)	330, 469
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	6 cut(s)	39, 113, 483, 510, 645, 681
HphI	GGTGA	5 cut(s)	25, 77, 332, 766, 797
Hpy166II	GTNNAC	6 cut(s)	85, 330, 420, 469, 567, 686
Hpy188I	TCNGA	2 cut(s)	449, 524
Hpy188III	TCNNGA	5 cut(s)	102, 362, 490, 568, 695
Hpy8I	GTNNAC	6 cut(s)	85, 330, 420, 469, 567, 686
Hpy99I	CGWCG	2 cut(s)	470, 473
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	1 cut(s)	606
HpyCH4IV	ACGT	3 cut(s)	236, 519, 723
HpyCH4V	TGCA	2 cut(s)	119, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	2 cut(s)	72, 351
HpySE526I	ACGT	3 cut(s)	236, 519, 723
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	294, 472, 524
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	4 cut(s)	187, 431, 440, 653
Lsp1109I	GCAGC	4 cut(s)	3, 166, 292, 730
LweI	GCATC	2 cut(s)	234, 317
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	3 cut(s)	236, 519, 723
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	296, 474, 526
MboI	GATC	3 cut(s)	294, 472, 524
MboII	GAAGA	9 cut(s)	85, 151, 217, 397, 400, 606, 724, 727, 730
MhlI	GDGCHC	3 cut(s)	65, 445, 489
MluCI	AATT	3 cut(s)	461, 690, 767
MroNI	GCCGGC	1 cut(s)	38
MseI	TTAA	2 cut(s)	719, 750
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	6 cut(s)	39, 113, 483, 510, 645, 681
MspR9I	CCNGG	4 cut(s)	484, 510, 646, 756
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	1 cut(s)	440
NaeI	GCCGGC	1 cut(s)	40
NciI	CCSGG	3 cut(s)	484, 510, 646
NdeII	GATC	3 cut(s)	294, 472, 524
NgoMIV	GCCGGC	1 cut(s)	38
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	31
PaeR7I	CTCGAG	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	2 cut(s)	495, 585
PdiI	GCCGGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	560
PinAI	ACCGGT	1 cut(s)	680
PkrI	GCNGC	4 cut(s)	18, 181, 307, 745
PshBI	ATTAAT	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	445
Psp1406I	AACGTT	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	445
SalI	GTCGAC	1 cut(s)	467
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	719, 750
SatI	GCNGC	4 cut(s)	17, 180, 306, 744
Sau3AI	GATC	3 cut(s)	294, 472, 524
Sau96I	GGNCC	1 cut(s)	551
ScrFI	CCNGG	4 cut(s)	484, 510, 646, 756
SduI	GDGCHC	3 cut(s)	65, 445, 489
SfaNI	GCATC	2 cut(s)	234, 317
Sfr274I	CTCGAG	1 cut(s)	488
SgrDI	CGTCGACG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	3 cut(s)	461, 690, 767
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	445
StyD4I	CCNGG	4 cut(s)	482, 508, 644, 754
TaaI	ACNGT	1 cut(s)	606
TaiI	ACGT	3 cut(s)	239, 522, 726
TaqI	TCGA	3 cut(s)	468, 489, 702
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	3 cut(s)	461, 690, 767
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	719, 750
Tru9I	TTAA	2 cut(s)	719, 750
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	16, 179, 305, 743
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	400, 760
TspRI	CASTG	1 cut(s)	630
Van91I	CCANNNNNTGG	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	551
VspI	ATTAAT	1 cut(s)	750
XapI	RAATTY	2 cut(s)	461, 767
XhoI	CTCGAG	1 cut(s)	488
XmiI	GTMKAC	2 cut(s)	468, 685
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.