Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030195.1

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Forward (+)

728 .. 2822

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgttgctcatgtctagtagcagtgtggctaaaaccaatgtggtcgatttgaagtcatcggaccctttacttcagctacaagttcagagacttagacccaagtcattctctcagcttgtgttcaggccactcccttcttcgaccacttcgttgagatcatcaggcgtggttgctctcttcaaatcgaaaaccaaagcccctgtcagcaagaaggcaccatcgccgaagcccaaagttgaatctggtatctttggaacatccggaggcattggttttacaaaggagaatgagctcttcgtgggtcgtgttgccatgattggttttgctgcatccttgctgggagaagcaattacaggaaaaggaattctttcacaattgaatttggagactggagttccaatctatgaagctgagcctcttcttctcttcttcatccttttcactctgcttggagccattggagctcttggtgaccgtggtagctttgtggatgatcctcccaccggaattgagggggccgttatccctccagggaaaggtatcagaggtgccttgggtctcaaggaaggaggtcctctgttcggattcaccaaggcgaatgagctattcgtaggaagattggctcaattgggatttgcattctctctaataggagagatcatcacagggaaaggagctctagcccaattaaacattgagactggagtccccatcaatgaaatcgaacctcttgtgttgctcaatgtcgtcttcttcttccttgctgcggtgaaccccgggaccggtaaattcatcacagatgaaggtgaagaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

272

Amino Acids

28.52

Weight (kDa)

7.86

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	214, 548
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	1 cut(s)	767
AclWI	GGATC	1 cut(s)	488
AcsI	RAATTY	3 cut(s)	363, 379, 788
AcuI	CTGAAG	1 cut(s)	56
AfiI	CCNNNNNNNGG	5 cut(s)	503, 536, 581, 766, 782
AgeI	ACCGGT	1 cut(s)	782
AgsI	TTSAA	4 cut(s)	52, 181, 239, 379
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	8 cut(s)	76, 115, 292, 410, 464, 483, 604, 677
AluI	AGCT	8 cut(s)	76, 115, 292, 410, 464, 483, 604, 677
Alw21I	GWGCWC	3 cut(s)	294, 466, 679
Alw26I	GTCTC	4 cut(s)	82, 380, 563, 692
AlwI	GGATC	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	776
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	2 cut(s)	125, 516
ApeKI	GCWGC	2 cut(s)	326, 764
ApoI	RAATTY	3 cut(s)	363, 379, 788
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AsiGI	ACCGGT	1 cut(s)	782
Asp700I	GAANNNNTTC	1 cut(s)	367
AspS9I	GGNCC	4 cut(s)	61, 516, 572, 780
AsuC2I	CCSGG	2 cut(s)	777, 778
AsuHPI	GGTGA	4 cut(s)	482, 580, 781, 818
AvaI	CYCGRG	1 cut(s)	776
AvaII	GGWCC	3 cut(s)	61, 572, 780
BanI	GGYRCC	2 cut(s)	214, 548
BanII	GRGCYC	3 cut(s)	294, 466, 679
BbsI	GAAGAC	1 cut(s)	742
Bbv12I	GWGCWC	3 cut(s)	294, 466, 679
BbvI	GCAGC	2 cut(s)	313, 751
BccI	CCATC	2 cut(s)	226, 719
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	531
BcnI	CCSGG	2 cut(s)	777, 778
BcoDI	GTCTC	4 cut(s)	82, 380, 563, 692
BfaI	CTAG	2 cut(s)	15, 680
BisI	GCNGC	2 cut(s)	327, 765
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	2 cut(s)	328, 766
Bme1390I	CCNGG	3 cut(s)	531, 777, 778
Bme18I	GGWCC	3 cut(s)	61, 572, 780
BmeT110I	CYCGRG	1 cut(s)	776
BmgT120I	GGNCC	4 cut(s)	61, 516, 572, 780
BmiI	GGNNCC	6 cut(s)	63, 216, 454, 517, 550, 781
BmrFI	CCNGG	3 cut(s)	531, 777, 778
BmsI	GCATC	1 cut(s)	338
BoxI	GACNNNNGTC	2 cut(s)	100, 704
BpiI	GAAGAC	1 cut(s)	742
BpmI	CTGGAG	3 cut(s)	411, 513, 723
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	2 cut(s)	777, 778
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	6 cut(s)	475, 530, 552, 591, 775, 776
BsaWI	WCCGGW	3 cut(s)	260, 503, 782
Bsc4I	CCNNNNNNNGG	5 cut(s)	503, 536, 581, 766, 782
Bse118I	RCCGGY	1 cut(s)	782
Bse1I	ACTGG	2 cut(s)	394, 706
BseAI	TCCGGA	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	6 cut(s)	475, 530, 552, 591, 775, 776
BseGI	GGATG	4 cut(s)	257, 329, 432, 496
BseLI	CCNNNNNNNGG	5 cut(s)	503, 536, 581, 766, 782
BseMII	CTCAG	2 cut(s)	125, 402
BseNI	ACTGG	2 cut(s)	394, 706
BseXI	GCAGC	2 cut(s)	313, 751
BseYI	CCCAGC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	127, 518
BshNI	GGYRCC	2 cut(s)	214, 548
BshTI	ACCGGT	1 cut(s)	782
BsiHKAI	GWGCWC	3 cut(s)	294, 466, 679
BsiHKCI	CYCGRG	1 cut(s)	776
BsiSI	CCGG	4 cut(s)	261, 504, 777, 783
BslFI	GGGAC	2 cut(s)	692, 793
BslI	CCNNNNNNNGG	5 cut(s)	503, 536, 581, 766, 782
BsmAI	GTCTC	4 cut(s)	82, 380, 563, 692
BsmFI	GGGAC	2 cut(s)	692, 793
BsmI	GAATGC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	127, 518
Bso31I	GGTCTC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	776
Bsp1286I	GDGCHC	3 cut(s)	294, 466, 679
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	155, 493, 657
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	1 cut(s)	767
BspANI	GGCC	2 cut(s)	127, 518
BspCNI	CTCAG	2 cut(s)	124, 403
BspEI	TCCGGA	1 cut(s)	260
BspLI	GGNNCC	6 cut(s)	63, 216, 454, 517, 550, 781
BspPI	GGATC	1 cut(s)	488
BspQI	GCTCTTC	1 cut(s)	299
BspT107I	GGYRCC	2 cut(s)	214, 548
BspTNI	GGTCTC	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	782
BsrI	ACTGG	2 cut(s)	394, 706
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	6 cut(s)	475, 530, 552, 591, 775, 776
BssMI	GATC	3 cut(s)	155, 493, 657
BssT1I	CCWWGG	2 cut(s)	552, 591
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	5 cut(s)	182, 299, 423, 431, 807
BstDEI	CTNAG	3 cut(s)	92, 111, 411
BstDSI	CCRYGG	1 cut(s)	475
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	4 cut(s)	257, 329, 432, 496
BstKTI	GATC	3 cut(s)	158, 496, 660
BstMAI	GTCTC	4 cut(s)	82, 380, 563, 692
BstMBI	GATC	3 cut(s)	155, 493, 657
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	1 cut(s)	531
BstPAI	GACNNNNGTC	2 cut(s)	100, 704
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	529, 775, 776
BstV1I	GCAGC	2 cut(s)	313, 751
BstV2I	GAAGAC	1 cut(s)	742
BsuRI	GGCC	2 cut(s)	127, 518
BtgI	CCRYGG	1 cut(s)	475
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	4 cut(s)	257, 329, 432, 496
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	782
Cfr13I	GGNCC	4 cut(s)	61, 516, 572, 780
Cfr9I	CCCGGG	1 cut(s)	776
CspAI	ACCGGT	1 cut(s)	782
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	2 cut(s)	10, 313
DdeI	CTNAG	3 cut(s)	92, 111, 411
DpnI	GATC	3 cut(s)	157, 495, 659
DpnII	GATC	3 cut(s)	155, 493, 657
Eam1104I	CTCTTC	5 cut(s)	182, 299, 423, 431, 807
EarI	CTCTTC	5 cut(s)	182, 299, 423, 431, 807
Ecl136II	GAGCTC	3 cut(s)	292, 464, 677
Eco130I	CCWWGG	2 cut(s)	552, 591
Eco24I	GRGCYC	3 cut(s)	294, 466, 679
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	3 cut(s)	61, 572, 780
Eco53kI	GAGCTC	3 cut(s)	292, 464, 677
Eco57I	CTGAAG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	776
Eco91I	GGTNACC	1 cut(s)	470
EcoICRI	GAGCTC	3 cut(s)	292, 464, 677
EcoO109I	RGGNCCY	1 cut(s)	572
EcoO65I	GGTNACC	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	2 cut(s)	552, 591
EcoT38I	GRGCYC	3 cut(s)	294, 466, 679
ErhI	CCWWGG	2 cut(s)	552, 591
FaeI	CATG	2 cut(s)	13, 316
FaiI	YATR	3 cut(s)	11, 314, 405
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	2 cut(s)	692, 793
FatI	CATG	2 cut(s)	9, 312
Fnu4HI	GCNGC	2 cut(s)	327, 765
FokI	GGATG	4 cut(s)	244, 316, 419, 503
FriOI	GRGCYC	3 cut(s)	294, 466, 679
Fsp4HI	GCNGC	2 cut(s)	327, 765
FspBI	CTAG	2 cut(s)	15, 680
GluI	GCNGC	2 cut(s)	327, 765
GsaI	CCCAGC	1 cut(s)	341
GsuI	CTGGAG	3 cut(s)	411, 513, 723
HaeIII	GGCC	2 cut(s)	127, 518
HapII	CCGG	4 cut(s)	261, 504, 777, 783
Hin1II	CATG	2 cut(s)	13, 316
HinfI	GANTC	3 cut(s)	239, 585, 705
HpaII	CCGG	4 cut(s)	261, 504, 777, 783
HphI	GGTGA	4 cut(s)	482, 580, 781, 818
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	4 cut(s)	61, 87, 545, 584
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	1 cut(s)	772
HpyAV	CCTTC	4 cut(s)	144, 205, 560, 797
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4V	TGCA	2 cut(s)	329, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	3 cut(s)	92, 111, 411
Hsp92II	CATG	2 cut(s)	13, 316
Kpn2I	TCCGGA	1 cut(s)	260
Kzo9I	GATC	3 cut(s)	155, 493, 657
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	3 cut(s)	452, 461, 674
Lsp1109I	GCAGC	2 cut(s)	313, 751
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	2 cut(s)	15, 680
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	3 cut(s)	157, 495, 659
MboI	GATC	3 cut(s)	155, 493, 657
MfeI	CAATTG	2 cut(s)	374, 626
MhlI	GDGCHC	3 cut(s)	294, 466, 679
MluCI	AATT	8 cut(s)	348, 363, 374, 379, 507, 626, 686, 788
MlyI	GAGTC	1 cut(s)	714
MnlI	CCTC	9 cut(s)	257, 426, 505, 507, 537, 539, 563, 585, 738
MroI	TCCGGA	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	1 cut(s)	689
MspI	CCGG	4 cut(s)	261, 504, 777, 783
MspR9I	CCNGG	3 cut(s)	531, 777, 778
MunI	CAATTG	2 cut(s)	374, 626
Mva1269I	GAATGC	1 cut(s)	638
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	2 cut(s)	777, 778
NdeII	GATC	3 cut(s)	155, 493, 657
NlaIII	CATG	2 cut(s)	13, 316
NlaIV	GGNNCC	6 cut(s)	63, 216, 454, 517, 550, 781
NmuCI	GTSAC	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	1 cut(s)	638
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	239, 585
PinAI	ACCGGT	1 cut(s)	782
PkrI	GCNGC	2 cut(s)	328, 766
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
PpuMI	RGGWCCY	1 cut(s)	572
PshAI	GACNNNNGTC	2 cut(s)	100, 704
Psp124BI	GAGCTC	3 cut(s)	294, 466, 679
Psp5II	RGGWCCY	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	529
PspEI	GGTNACC	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	6 cut(s)	63, 216, 454, 517, 550, 781
PspPI	GGNCC	4 cut(s)	61, 516, 572, 780
PspPPI	RGGWCCY	1 cut(s)	572
SacI	GAGCTC	3 cut(s)	294, 466, 679
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	2 cut(s)	327, 765
Sau3AI	GATC	3 cut(s)	155, 493, 657
Sau96I	GGNCC	4 cut(s)	61, 516, 572, 780
SchI	GAGTC	1 cut(s)	714
ScrFI	CCNGG	3 cut(s)	531, 777, 778
SduI	GDGCHC	3 cut(s)	294, 466, 679
SfaNI	GCATC	1 cut(s)	338
SinI	GGWCC	3 cut(s)	61, 572, 780
SmaI	CCCGGG	1 cut(s)	778
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	8 cut(s)	348, 363, 374, 379, 507, 626, 686, 788
SsiI	CCGC	1 cut(s)	767
SspMI	CTAG	2 cut(s)	15, 680
SstI	GAGCTC	3 cut(s)	294, 466, 679
StyD4I	CCNGG	3 cut(s)	529, 775, 776
StyI	CCWWGG	2 cut(s)	552, 591
TaaI	ACNGT	1 cut(s)	476
TaqI	TCGA	4 cut(s)	45, 140, 185, 723
TasI	AATT	8 cut(s)	348, 363, 374, 379, 507, 626, 686, 788
TfiI	GAWTC	2 cut(s)	239, 585
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	2 cut(s)	326, 764
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	5 cut(s)	420, 421, 732, 781, 816
TspMI	CCCGGG	1 cut(s)	776
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	3 cut(s)	61, 572, 780
XapI	RAATTY	3 cut(s)	363, 379, 788
XmaI	CCCGGG	1 cut(s)	776
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	2 cut(s)	15, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.