Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Reverse (-)

56205546 .. 56208876

Gene Structure 3331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G032100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTCAAACCATGTTGCTCATGTCTAGTAGCAGTGTGGCTAAAACCAATGTGGTCGATTTGAAGTCATCGGACCCTTTACTTCAGCTACAAGTTCAGAGACTTAGACCCAAGTCATTCTCTCAGCTTGTGTTCAGGCCACTCCCTTCTTCGACCACTTCGTTGAGATCATCAGGCGTGGTTGCTCTCTTCAAATCGAAAACCAAAGCCCCTGTCAGCAAGAAGGCACCATCGCCGAAGCCCAAAGTTGAATCTGGTATCTTTGGAACATCCGGAGGCATTGGTTTTACAAAGGAGAATGAGCTCTTCGTGGGTCGTGTTGCCATGATTGGTTTTGCTGCATCCTTGCTGGGAGAAGCAATTACAGGAAAAGGAATTCTTTCACAATTGAATTTGGAGACTGGAGTTCCAATCTATGAAGCTGAGCCTCTTCTTCTCTTCTTCATCCTTTTCACTCTGCTTGGAGCCATTGGAGCTCTTGGTGACCGTGGTAGCTTTGTGGATGATCCTCCCACCGGAATTGAGGGGGCCGTTATCCCTCCAGGGAAAGGTATCAGAGGTGCCTTGGGTCTCAAGGAAGGAGGTCCTCTGTTCGGATTCACCAAGGCCAATGAGCTATTCGTAGGAAGATTGGCTCAATTGGGATTTGCATTCTCTCTAATAGGAGAGATCATCACAGGGAAAGGAGCTCTAGCCCAATTAAACATTGAGACTGGAGTCCCCATCAATGAAATCGAACCTCTTGTGTTGCTCAATGTCGTCTTCTTCTTCCTTGCTGCGGTGAACCCCGGGACCGGTAAATTCATCACAGATGAAGGTGAAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

276

Amino Acids

28.95

Weight (kDa)

7.86

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	96 - 220	8.6e-08	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	226, 560
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	1 cut(s)	779
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	3 cut(s)	375, 391, 800
AcuI	CTGAAG	1 cut(s)	68
AfiI	CCNNNNNNNGG	5 cut(s)	515, 548, 593, 778, 794
AgeI	ACCGGT	1 cut(s)	794
AgsI	TTSAA	4 cut(s)	64, 193, 251, 391
AjnI	CCWGG	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	8 cut(s)	88, 127, 304, 422, 476, 495, 616, 689
AluI	AGCT	8 cut(s)	88, 127, 304, 422, 476, 495, 616, 689
Alw21I	GWGCWC	3 cut(s)	306, 478, 691
Alw26I	GTCTC	4 cut(s)	94, 392, 575, 704
AlwI	GGATC	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	788
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	3 cut(s)	137, 528, 606
ApeKI	GCWGC	2 cut(s)	338, 776
ApoI	RAATTY	3 cut(s)	375, 391, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AsiGI	ACCGGT	1 cut(s)	794
Asp700I	GAANNNNTTC	1 cut(s)	379
AspS9I	GGNCC	4 cut(s)	73, 528, 584, 792
AsuC2I	CCSGG	2 cut(s)	789, 790
AsuHPI	GGTGA	4 cut(s)	494, 592, 793, 830
AvaI	CYCGRG	1 cut(s)	788
AvaII	GGWCC	3 cut(s)	73, 584, 792
BanI	GGYRCC	2 cut(s)	226, 560
BanII	GRGCYC	3 cut(s)	306, 478, 691
BbsI	GAAGAC	1 cut(s)	754
Bbv12I	GWGCWC	3 cut(s)	306, 478, 691
BbvI	GCAGC	2 cut(s)	325, 763
BccI	CCATC	2 cut(s)	238, 731
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	2 cut(s)	789, 790
BcoDI	GTCTC	4 cut(s)	94, 392, 575, 704
BfaI	CTAG	2 cut(s)	27, 692
BisI	GCNGC	2 cut(s)	339, 777
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	2 cut(s)	340, 778
Bme1390I	CCNGG	3 cut(s)	543, 789, 790
Bme18I	GGWCC	3 cut(s)	73, 584, 792
BmeT110I	CYCGRG	1 cut(s)	788
BmgT120I	GGNCC	4 cut(s)	73, 528, 584, 792
BmiI	GGNNCC	6 cut(s)	75, 228, 466, 529, 562, 793
BmrFI	CCNGG	3 cut(s)	543, 789, 790
BmsI	GCATC	1 cut(s)	350
BoxI	GACNNNNGTC	2 cut(s)	112, 716
BpiI	GAAGAC	1 cut(s)	754
BpmI	CTGGAG	3 cut(s)	423, 525, 735
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	789, 790
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	6 cut(s)	487, 542, 564, 603, 787, 788
BsaWI	WCCGGW	3 cut(s)	272, 515, 794
Bsc4I	CCNNNNNNNGG	5 cut(s)	515, 548, 593, 778, 794
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	2 cut(s)	406, 718
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	6 cut(s)	487, 542, 564, 603, 787, 788
BseGI	GGATG	4 cut(s)	269, 341, 444, 508
BseLI	CCNNNNNNNGG	5 cut(s)	515, 548, 593, 778, 794
BseMII	CTCAG	2 cut(s)	137, 414
BseNI	ACTGG	2 cut(s)	406, 718
BseXI	GCAGC	2 cut(s)	325, 763
BseYI	CCCAGC	1 cut(s)	349
BshFI	GGCC	3 cut(s)	139, 530, 608
BshNI	GGYRCC	2 cut(s)	226, 560
BshTI	ACCGGT	1 cut(s)	794
BsiHKAI	GWGCWC	3 cut(s)	306, 478, 691
BsiHKCI	CYCGRG	1 cut(s)	788
BsiSI	CCGG	4 cut(s)	273, 516, 789, 795
BslFI	GGGAC	2 cut(s)	704, 805
BslI	CCNNNNNNNGG	5 cut(s)	515, 548, 593, 778, 794
BsmAI	GTCTC	4 cut(s)	94, 392, 575, 704
BsmFI	GGGAC	2 cut(s)	704, 805
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	139, 530, 608
Bso31I	GGTCTC	1 cut(s)	575
BsoBI	CYCGRG	1 cut(s)	788
Bsp1286I	GDGCHC	3 cut(s)	306, 478, 691
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	3 cut(s)	167, 505, 669
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	1 cut(s)	779
BspANI	GGCC	3 cut(s)	139, 530, 608
BspCNI	CTCAG	2 cut(s)	136, 415
BspEI	TCCGGA	1 cut(s)	272
BspLI	GGNNCC	6 cut(s)	75, 228, 466, 529, 562, 793
BspPI	GGATC	1 cut(s)	500
BspQI	GCTCTTC	1 cut(s)	311
BspT107I	GGYRCC	2 cut(s)	226, 560
BspTNI	GGTCTC	1 cut(s)	575
BsrFI	RCCGGY	1 cut(s)	794
BsrI	ACTGG	2 cut(s)	406, 718
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	6 cut(s)	487, 542, 564, 603, 787, 788
BssMI	GATC	3 cut(s)	167, 505, 669
BssT1I	CCWWGG	2 cut(s)	564, 603
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	5 cut(s)	194, 311, 435, 443, 819
BstDEI	CTNAG	3 cut(s)	104, 123, 423
BstDSI	CCRYGG	1 cut(s)	487
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	4 cut(s)	269, 341, 444, 508
BstKTI	GATC	3 cut(s)	170, 508, 672
BstMAI	GTCTC	4 cut(s)	94, 392, 575, 704
BstMBI	GATC	3 cut(s)	167, 505, 669
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	1 cut(s)	543
BstPAI	GACNNNNGTC	2 cut(s)	112, 716
BstPI	GGTNACC	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	541, 787, 788
BstV1I	GCAGC	2 cut(s)	325, 763
BstV2I	GAAGAC	1 cut(s)	754
BsuRI	GGCC	3 cut(s)	139, 530, 608
BtgI	CCRYGG	1 cut(s)	487
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	4 cut(s)	269, 341, 444, 508
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	4 cut(s)	73, 528, 584, 792
Cfr9I	CCCGGG	1 cut(s)	788
CspAI	ACCGGT	1 cut(s)	794
CspCI	CAANNNNNGTGG	2 cut(s)	502, 537
CviAII	CATG	3 cut(s)	13, 22, 325
DdeI	CTNAG	3 cut(s)	104, 123, 423
DpnI	GATC	3 cut(s)	169, 507, 671
DpnII	GATC	3 cut(s)	167, 505, 669
Eam1104I	CTCTTC	5 cut(s)	194, 311, 435, 443, 819
EarI	CTCTTC	5 cut(s)	194, 311, 435, 443, 819
Ecl136II	GAGCTC	3 cut(s)	304, 476, 689
Eco130I	CCWWGG	2 cut(s)	564, 603
Eco24I	GRGCYC	3 cut(s)	306, 478, 691
Eco31I	GGTCTC	1 cut(s)	575
Eco47I	GGWCC	3 cut(s)	73, 584, 792
Eco53kI	GAGCTC	3 cut(s)	304, 476, 689
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	788
Eco91I	GGTNACC	1 cut(s)	482
EcoICRI	GAGCTC	3 cut(s)	304, 476, 689
EcoO109I	RGGNCCY	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	482
EcoRI	GAATTC	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	564, 603
EcoT38I	GRGCYC	3 cut(s)	306, 478, 691
ErhI	CCWWGG	2 cut(s)	564, 603
FaeI	CATG	3 cut(s)	16, 25, 328
FaiI	YATR	4 cut(s)	14, 23, 326, 417
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	2 cut(s)	704, 805
FatI	CATG	3 cut(s)	12, 21, 324
Fnu4HI	GCNGC	2 cut(s)	339, 777
FokI	GGATG	4 cut(s)	256, 328, 431, 515
FriOI	GRGCYC	3 cut(s)	306, 478, 691
Fsp4HI	GCNGC	2 cut(s)	339, 777
FspBI	CTAG	2 cut(s)	27, 692
GluI	GCNGC	2 cut(s)	339, 777
GsaI	CCCAGC	1 cut(s)	353
GsuI	CTGGAG	3 cut(s)	423, 525, 735
HaeIII	GGCC	3 cut(s)	139, 530, 608
HapII	CCGG	4 cut(s)	273, 516, 789, 795
Hin1II	CATG	3 cut(s)	16, 25, 328
HinfI	GANTC	3 cut(s)	251, 597, 717
HpaII	CCGG	4 cut(s)	273, 516, 789, 795
HphI	GGTGA	4 cut(s)	494, 592, 793, 830
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	4 cut(s)	73, 99, 557, 596
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	4 cut(s)	156, 217, 572, 809
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	2 cut(s)	341, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	3 cut(s)	104, 123, 423
Hsp92II	CATG	3 cut(s)	16, 25, 328
Kpn2I	TCCGGA	1 cut(s)	272
Kzo9I	GATC	3 cut(s)	167, 505, 669
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	3 cut(s)	464, 473, 686
Lsp1109I	GCAGC	2 cut(s)	325, 763
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	2 cut(s)	27, 692
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	3 cut(s)	169, 507, 671
MboI	GATC	3 cut(s)	167, 505, 669
MfeI	CAATTG	2 cut(s)	386, 638
MhlI	GDGCHC	3 cut(s)	306, 478, 691
MluCI	AATT	8 cut(s)	360, 375, 386, 391, 519, 638, 698, 800
MlyI	GAGTC	1 cut(s)	726
MnlI	CCTC	9 cut(s)	269, 438, 517, 519, 549, 551, 575, 597, 750
MroI	TCCGGA	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	1 cut(s)	701
MspI	CCGG	4 cut(s)	273, 516, 789, 795
MspR9I	CCNGG	3 cut(s)	543, 789, 790
MunI	CAATTG	2 cut(s)	386, 638
Mva1269I	GAATGC	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	473
NciI	CCSGG	2 cut(s)	789, 790
NdeII	GATC	3 cut(s)	167, 505, 669
NlaIII	CATG	3 cut(s)	16, 25, 328
NlaIV	GGNNCC	6 cut(s)	75, 228, 466, 529, 562, 793
NmuCI	GTSAC	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PctI	GAATGC	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	251, 597
PinAI	ACCGGT	1 cut(s)	794
PkrI	GCNGC	2 cut(s)	340, 778
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	584
PshAI	GACNNNNGTC	2 cut(s)	112, 716
Psp124BI	GAGCTC	3 cut(s)	306, 478, 691
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	541
PspEI	GGTNACC	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	6 cut(s)	75, 228, 466, 529, 562, 793
PspPI	GGNCC	4 cut(s)	73, 528, 584, 792
PspPPI	RGGWCCY	1 cut(s)	584
SacI	GAGCTC	3 cut(s)	306, 478, 691
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	701
SatI	GCNGC	2 cut(s)	339, 777
Sau3AI	GATC	3 cut(s)	167, 505, 669
Sau96I	GGNCC	4 cut(s)	73, 528, 584, 792
SchI	GAGTC	1 cut(s)	726
ScrFI	CCNGG	3 cut(s)	543, 789, 790
SduI	GDGCHC	3 cut(s)	306, 478, 691
SfaNI	GCATC	1 cut(s)	350
SinI	GGWCC	3 cut(s)	73, 584, 792
SmaI	CCCGGG	1 cut(s)	790
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	8 cut(s)	360, 375, 386, 391, 519, 638, 698, 800
SsiI	CCGC	1 cut(s)	779
SspMI	CTAG	2 cut(s)	27, 692
SstI	GAGCTC	3 cut(s)	306, 478, 691
StyD4I	CCNGG	3 cut(s)	541, 787, 788
StyI	CCWWGG	2 cut(s)	564, 603
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	4 cut(s)	57, 152, 197, 735
TasI	AATT	8 cut(s)	360, 375, 386, 391, 519, 638, 698, 800
TfiI	GAWTC	2 cut(s)	251, 597
Tru1I	TTAA	1 cut(s)	701
Tru9I	TTAA	1 cut(s)	701
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	338, 776
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	5 cut(s)	432, 433, 744, 793, 828
TspMI	CCCGGG	1 cut(s)	788
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	3 cut(s)	73, 584, 792
XapI	RAATTY	3 cut(s)	375, 391, 800
XmaI	CCCGGG	1 cut(s)	788
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	2 cut(s)	27, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.