Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Forward (+)

12420791 .. 12423261

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTCAAACCATGTTGCTCATGTCTAGTAGCAGAGTGGCTAAAACCAATGTGGTCGATTTGAAGTCATCGGACCCTTTACTTCAGCTACAAGTTCAGAGACTTAGACCCAAGTCATTCTCTCAGCAGCTGTGTTGTTCAGGGCCACTCCCTCCTTCGACCACTTCGTTGAGATCATCAGGCGTGATTGCTCTCTTCAAATCGAAAACCAAAGCCCCTATCAGCAAGAAGGCACCATCGCCGAAGCCCAAAGTTGAATCTGGTATCTTTGGAACATCCGGAGGCATTGGTTTTACAAAGGAGAATGAGCTCTTCGTGGGTCGTGTTGCCATGATTGGTTTTGCTAAGCAATTACAGGAAAAAGGAATTCTTTCACAATTGAATTTGGAGACTGGAGTTCCAATCTATGAAGCTGAGCCTCTTCTTCTCTTCTTCATCCTTTTCACTCTGCTTGGAGCCATTGGAGCTCTTGGTGACCGTGGCAGCTTTGTGGATGATCCTCCCACCGGAATTGAGGGGGCGGTTATCCCTCCAGGGAAAGGTATCAGAGGTGCCTTGGGTCTCAAGGAAGGAGGTCCTCTGTTCGGATTCACCAAGGCGAATGAGCTATTCGTAGGAAGATTGGCTCAATTGGGATTTGCATTCTCTCTAATAGGAGAGATCATCACAGGGAAGGGAGCTCTAGCTCAATTAAACATTGAGACTGGAGTCCCCATCAATGAAATCGAACCTCTTGTGTTGCTCAATGTCGTCTTCTTCTTCCTTGCTGCAGTGAACCCCGGGACCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

263

Amino Acids

27.77

Weight (kDa)

9.52

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	232, 551
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	366, 382
AcuI	CTGAAG	1 cut(s)	68
AfiI	CCNNNNNNNGG	4 cut(s)	506, 539, 584, 786
AgsI	TTSAA	4 cut(s)	64, 199, 257, 382
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	9 cut(s)	88, 130, 310, 413, 467, 486, 607, 680, 686
AluI	AGCT	9 cut(s)	88, 130, 310, 413, 467, 486, 607, 680, 686
Alw21I	GWGCWC	3 cut(s)	312, 469, 682
Alw26I	GTCTC	4 cut(s)	94, 383, 566, 695
AlwI	GGATC	1 cut(s)	491
AlwNI	CAGNNNCTG	1 cut(s)	130
Ama87I	CYCGRG	1 cut(s)	779
Aor13HI	TCCGGA	1 cut(s)	278
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	3 cut(s)	127, 483, 767
ApoI	RAATTY	2 cut(s)	366, 382
Asp700I	GAANNNNTTC	1 cut(s)	370
AspS9I	GGNCC	4 cut(s)	73, 143, 575, 783
AsuC2I	CCSGG	3 cut(s)	780, 781, 787
AsuHPI	GGTGA	2 cut(s)	485, 583
AvaI	CYCGRG	1 cut(s)	779
AvaII	GGWCC	3 cut(s)	73, 575, 783
BanI	GGYRCC	2 cut(s)	232, 551
BanII	GRGCYC	3 cut(s)	312, 469, 682
BbsI	GAAGAC	1 cut(s)	745
Bbv12I	GWGCWC	3 cut(s)	312, 469, 682
BbvI	GCAGC	3 cut(s)	139, 495, 754
BccI	CCATC	2 cut(s)	244, 722
BciT130I	CCWGG	1 cut(s)	534
BcnI	CCSGG	3 cut(s)	780, 781, 787
BcoDI	GTCTC	4 cut(s)	94, 383, 566, 695
BfaI	CTAG	2 cut(s)	27, 683
BfmI	CTRYAG	1 cut(s)	768
BisI	GCNGC	3 cut(s)	128, 484, 768
BlpI	GCTNAGC	2 cut(s)	345, 414
BlsI	GCNGC	3 cut(s)	129, 485, 769
Bme1390I	CCNGG	4 cut(s)	534, 780, 781, 787
Bme18I	GGWCC	3 cut(s)	73, 575, 783
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	4 cut(s)	73, 143, 575, 783
BmiI	GGNNCC	6 cut(s)	75, 234, 457, 553, 784, 785
BmrFI	CCNGG	4 cut(s)	534, 780, 781, 787
BoxI	GACNNNNGTC	2 cut(s)	112, 707
BpiI	GAAGAC	1 cut(s)	745
BpmI	CTGGAG	3 cut(s)	414, 516, 726
Bpu1102I	GCTNAGC	2 cut(s)	345, 414
BpuEI	CTTGAG	1 cut(s)	548
BpuMI	CCSGG	3 cut(s)	780, 781, 787
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	6 cut(s)	478, 533, 555, 594, 778, 779
BsaWI	WCCGGW	2 cut(s)	278, 506
Bsc4I	CCNNNNNNNGG	4 cut(s)	506, 539, 584, 786
Bse1I	ACTGG	2 cut(s)	397, 709
BseAI	TCCGGA	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	6 cut(s)	478, 533, 555, 594, 778, 779
BseGI	GGATG	3 cut(s)	275, 435, 499
BseLI	CCNNNNNNNGG	4 cut(s)	506, 539, 584, 786
BseMII	CTCAG	2 cut(s)	137, 405
BseNI	ACTGG	2 cut(s)	397, 709
BseXI	GCAGC	3 cut(s)	139, 495, 754
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	2 cut(s)	232, 551
BsiHKAI	GWGCWC	3 cut(s)	312, 469, 682
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	4 cut(s)	279, 507, 780, 787
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	4 cut(s)	506, 539, 584, 786
BsmAI	GTCTC	4 cut(s)	94, 383, 566, 695
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	779
Bsp1286I	GDGCHC	3 cut(s)	312, 469, 682
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	173, 496, 660
Bsp1720I	GCTNAGC	2 cut(s)	345, 414
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	2 cut(s)	136, 406
BspEI	TCCGGA	1 cut(s)	278
BspLI	GGNNCC	6 cut(s)	75, 234, 457, 553, 784, 785
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	1 cut(s)	491
BspQI	GCTCTTC	1 cut(s)	317
BspT107I	GGYRCC	2 cut(s)	232, 551
BspTNI	GGTCTC	1 cut(s)	566
BsrI	ACTGG	2 cut(s)	397, 709
BssECI	CCNNGG	6 cut(s)	478, 533, 555, 594, 778, 779
BssMI	GATC	3 cut(s)	173, 496, 660
BssT1I	CCWWGG	2 cut(s)	555, 594
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	4 cut(s)	200, 317, 426, 434
BstDEI	CTNAG	4 cut(s)	104, 123, 345, 414
BstDSI	CCRYGG	1 cut(s)	478
BstEII	GGTNACC	1 cut(s)	473
BstF5I	GGATG	3 cut(s)	275, 435, 499
BstKTI	GATC	3 cut(s)	176, 499, 663
BstMAI	GTCTC	4 cut(s)	94, 383, 566, 695
BstMBI	GATC	3 cut(s)	173, 496, 660
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	534
BstPAI	GACNNNNGTC	2 cut(s)	112, 707
BstPI	GGTNACC	1 cut(s)	473
BstSCI	CCNGG	4 cut(s)	532, 778, 779, 785
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	3 cut(s)	139, 495, 754
BstV2I	GAAGAC	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	478
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	275, 435, 499
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	777
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr13I	GGNCC	4 cut(s)	73, 143, 575, 783
Cfr9I	CCCGGG	1 cut(s)	779
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	3 cut(s)	13, 22, 331
DdeI	CTNAG	4 cut(s)	104, 123, 345, 414
DpnI	GATC	3 cut(s)	175, 498, 662
DpnII	GATC	3 cut(s)	173, 496, 660
Eam1104I	CTCTTC	4 cut(s)	200, 317, 426, 434
EarI	CTCTTC	4 cut(s)	200, 317, 426, 434
Ecl136II	GAGCTC	3 cut(s)	310, 467, 680
Eco130I	CCWWGG	2 cut(s)	555, 594
Eco24I	GRGCYC	3 cut(s)	312, 469, 682
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	3 cut(s)	73, 575, 783
Eco53kI	GAGCTC	3 cut(s)	310, 467, 680
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	779
Eco91I	GGTNACC	1 cut(s)	473
EcoICRI	GAGCTC	3 cut(s)	310, 467, 680
EcoO109I	RGGNCCY	2 cut(s)	575, 783
EcoO65I	GGTNACC	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	555, 594
EcoT38I	GRGCYC	3 cut(s)	312, 469, 682
ErhI	CCWWGG	2 cut(s)	555, 594
FaeI	CATG	3 cut(s)	16, 25, 334
FaiI	YATR	4 cut(s)	14, 23, 332, 408
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	3 cut(s)	12, 21, 330
Fnu4HI	GCNGC	3 cut(s)	128, 484, 768
FokI	GGATG	3 cut(s)	262, 422, 506
FriOI	GRGCYC	3 cut(s)	312, 469, 682
Fsp4HI	GCNGC	3 cut(s)	128, 484, 768
FspBI	CTAG	2 cut(s)	27, 683
GluI	GCNGC	3 cut(s)	128, 484, 768
GsuI	CTGGAG	3 cut(s)	414, 516, 726
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	4 cut(s)	279, 507, 780, 787
Hin1II	CATG	3 cut(s)	16, 25, 334
HinfI	GANTC	3 cut(s)	257, 588, 708
HpaII	CCGG	4 cut(s)	279, 507, 780, 787
HphI	GGTGA	2 cut(s)	485, 583
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	4 cut(s)	73, 99, 548, 587
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	1 cut(s)	775
HpyAV	CCTTC	4 cut(s)	165, 223, 563, 667
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	2 cut(s)	641, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	4 cut(s)	104, 123, 345, 414
Hsp92II	CATG	3 cut(s)	16, 25, 334
KflI	GGGWCCC	1 cut(s)	783
Kpn2I	TCCGGA	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	173, 496, 660
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	3 cut(s)	455, 464, 677
Lsp1109I	GCAGC	3 cut(s)	139, 495, 754
MaeI	CTAG	2 cut(s)	27, 683
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	3 cut(s)	175, 498, 662
MboI	GATC	3 cut(s)	173, 496, 660
MfeI	CAATTG	2 cut(s)	377, 629
MhlI	GDGCHC	3 cut(s)	312, 469, 682
MluCI	AATT	7 cut(s)	350, 366, 377, 382, 510, 629, 689
MlyI	GAGTC	1 cut(s)	717
MroI	TCCGGA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	370
MseI	TTAA	1 cut(s)	692
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	4 cut(s)	279, 507, 780, 787
MspR9I	CCNGG	4 cut(s)	534, 780, 781, 787
MunI	CAATTG	2 cut(s)	377, 629
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	3 cut(s)	780, 781, 787
NdeII	GATC	3 cut(s)	173, 496, 660
NlaIII	CATG	3 cut(s)	16, 25, 334
NlaIV	GGNNCC	6 cut(s)	75, 234, 457, 553, 784, 785
NmuCI	GTSAC	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PctI	GAATGC	1 cut(s)	641
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	257, 588
PkrI	GCNGC	3 cut(s)	129, 485, 769
PleI	GAGTC	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	716
PpuMI	RGGWCCY	2 cut(s)	575, 783
PshAI	GACNNNNGTC	2 cut(s)	112, 707
Psp124BI	GAGCTC	3 cut(s)	312, 469, 682
Psp5II	RGGWCCY	2 cut(s)	575, 783
Psp6I	CCWGG	1 cut(s)	532
PspEI	GGTNACC	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	6 cut(s)	75, 234, 457, 553, 784, 785
PspPI	GGNCC	4 cut(s)	73, 143, 575, 783
PspPPI	RGGWCCY	2 cut(s)	575, 783
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	130
SacI	GAGCTC	3 cut(s)	312, 469, 682
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	692
SatI	GCNGC	3 cut(s)	128, 484, 768
Sau3AI	GATC	3 cut(s)	173, 496, 660
Sau96I	GGNCC	4 cut(s)	73, 143, 575, 783
SchI	GAGTC	1 cut(s)	717
ScrFI	CCNGG	4 cut(s)	534, 780, 781, 787
SduI	GDGCHC	3 cut(s)	312, 469, 682
SfcI	CTRYAG	1 cut(s)	768
SinI	GGWCC	3 cut(s)	73, 575, 783
SmaI	CCCGGG	1 cut(s)	781
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	7 cut(s)	350, 366, 377, 382, 510, 629, 689
SsiI	CCGC	1 cut(s)	521
SspMI	CTAG	2 cut(s)	27, 683
SstI	GAGCTC	3 cut(s)	312, 469, 682
StyD4I	CCNGG	4 cut(s)	532, 778, 779, 785
StyI	CCWWGG	2 cut(s)	555, 594
TaaI	ACNGT	1 cut(s)	479
TaqI	TCGA	4 cut(s)	57, 158, 203, 726
TasI	AATT	7 cut(s)	350, 366, 377, 382, 510, 629, 689
TfiI	GAWTC	2 cut(s)	257, 588
Tru1I	TTAA	1 cut(s)	692
Tru9I	TTAA	1 cut(s)	692
TscAI	CASTG	1 cut(s)	777
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	3 cut(s)	127, 483, 767
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	3 cut(s)	423, 424, 735
TspMI	CCCGGG	1 cut(s)	779
TspRI	CASTG	1 cut(s)	777
VpaK11BI	GGWCC	3 cut(s)	73, 575, 783
XapI	RAATTY	2 cut(s)	366, 382
XmaI	CCCGGG	1 cut(s)	779
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	2 cut(s)	27, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.