Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Forward (+)

41187593 .. 41190868

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G497100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTCAAACAATGTTGCTCATGTCTAGCAGTGTGTCTTCAAGCCATGTGGTGGATTTGAAGTCCTCAGACCCTTTACTTCAATTACAAGTGCAAAGACTTAGGCCCAAGTCTTTCTCTCAACTTGTGTTCAGACCACTTCCTTCATCCTCTTCCTTTGCCTCCTCATCATCTCCTGCCATTCCTACCATCGTCGCGCTCTTCAAGTCAAAAACCAAAGCCCCTGTCAAGAAGGCACCAGCGCCGAAGCCGAAGGTTGAAGATGGTATCTTTGGAACCTCTGGAGGCATTGGTTTCACAAAGCAGAATGAGCTCTTTGTGGGTCGGGTTGCCATGATTGGCTTTGCTGCATCATTGTTGGGAGAAGCAATTACAGGGAAAGGAATTCTTGCACAACTGAATCTGGAAACTGGAGTTCCGATCTATGAAGCCGAACCTCTCCTTCTCTTCTTCATCCTTTTTACCCTGCTTGGAGCCATTGGAGCCCTAGGTGACCGTGGTAGCTTCGTTGATGACCCGCCCGCTGGAATTGAAAGGGCAGTCATCCCTCCAGGCAAAGGATTTAGATCAGCCTTAGGTCTCAAGGAAGGAGGTCCTCTATTTGGATTCACAAAGGCAAATGAGCTATTTGTAGGAAGATTGGCACAATTGGGATTTGCATTCTCTCTAATAGGAGAAATCATCACAGGGAAGGGAGCTCTAGCACAGTTAAACATTGAGACTGGGGTCCCCATTAATGAAATTGAACCGCTTGTGTTGCTCAATGTTGTCTTCTTCTTCATTGCTGCTTTGAATCCTGGGACTGGTAAATTTGTCACAGATGAGGGTGAGGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

280

Amino Acids

29.33

Weight (kDa)

6.65

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccB7I	CCANNNNNTGG	1 cut(s)	52
AccII	CGCG	1 cut(s)	197
AciI	CCGC	3 cut(s)	518, 522, 749
AcsI	RAATTY	2 cut(s)	384, 809
AfiI	CCNNNNNNNGG	5 cut(s)	52, 524, 557, 602, 803
AgsI	TTSAA	8 cut(s)	42, 61, 83, 205, 260, 533, 746, 793
AjnI	CCWGG	2 cut(s)	550, 796
AluBI	AGCT	4 cut(s)	313, 504, 625, 698
AluI	AGCT	4 cut(s)	313, 504, 625, 698
Alw21I	GWGCWC	2 cut(s)	315, 700
Alw26I	GTCTC	2 cut(s)	584, 713
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	347, 785
ApoI	RAATTY	2 cut(s)	384, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
AseI	ATTAAT	1 cut(s)	735
AspA2I	CCTAGG	1 cut(s)	487
AspLEI	GCGC	2 cut(s)	199, 244
AspS9I	GGNCC	3 cut(s)	105, 593, 727
AsuHPI	GGTGA	2 cut(s)	503, 839
AvaII	GGWCC	2 cut(s)	593, 727
AvrII	CCTAGG	1 cut(s)	487
AxyI	CCTNAGG	1 cut(s)	574
BanI	GGYRCC	1 cut(s)	235
BanII	GRGCYC	3 cut(s)	315, 487, 700
BbsI	GAAGAC	2 cut(s)	30, 763
Bbv12I	GWGCWC	2 cut(s)	315, 700
BbvI	GCAGC	2 cut(s)	334, 772
BccI	CCATC	2 cut(s)	197, 257
BciT130I	CCWGG	2 cut(s)	552, 798
BcoDI	GTCTC	2 cut(s)	584, 713
BfaI	CTAG	3 cut(s)	27, 488, 701
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	2 cut(s)	348, 786
BlnI	CCTAGG	1 cut(s)	487
BlsI	GCNGC	2 cut(s)	349, 787
Bme1390I	CCNGG	2 cut(s)	552, 798
Bme18I	GGWCC	2 cut(s)	593, 727
BmgT120I	GGNCC	3 cut(s)	105, 593, 727
BmiI	GGNNCC	6 cut(s)	237, 277, 475, 484, 728, 729
BmrFI	CCNGG	2 cut(s)	552, 798
BmrI	ACTGGG	1 cut(s)	732
BmsI	GCATC	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	732
BoxI	GACNNNNGTC	1 cut(s)	725
BpiI	GAAGAC	2 cut(s)	30, 763
BpmI	CTGGAG	3 cut(s)	303, 432, 534
BpuEI	CTTGAG	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	565
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	3 cut(s)	487, 496, 797
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 524, 557, 602, 803
Bse1I	ACTGG	3 cut(s)	415, 727, 808
Bse21I	CCTNAGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	780
Bse8I	GATNNNNATC	1 cut(s)	565
BseBI	CCWGG	2 cut(s)	552, 798
BseDI	CCNNGG	3 cut(s)	487, 496, 797
BseGI	GGATG	3 cut(s)	146, 453, 543
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	5 cut(s)	52, 524, 557, 602, 803
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	3 cut(s)	415, 727, 808
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	334, 772
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	2 cut(s)	315, 700
BslFI	GGGAC	2 cut(s)	713, 814
BslI	CCNNNNNNNGG	5 cut(s)	52, 524, 557, 602, 803
BsmAI	GTCTC	2 cut(s)	584, 713
BsmFI	GGGAC	2 cut(s)	713, 814
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	3 cut(s)	315, 487, 700
Bsp143I	GATC	2 cut(s)	420, 566
BspACI	CCGC	3 cut(s)	518, 522, 749
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	6 cut(s)	237, 277, 475, 484, 728, 729
BspQI	GCTCTTC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	780
BsrI	ACTGG	3 cut(s)	415, 727, 808
BssECI	CCNNGG	3 cut(s)	487, 496, 797
BssMI	GATC	2 cut(s)	420, 566
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	2 cut(s)	552, 798
Bst4CI	ACNGT	2 cut(s)	497, 708
Bst6I	CTCTTC	3 cut(s)	157, 206, 452
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	3 cut(s)	67, 101, 574
BstDSI	CCRYGG	1 cut(s)	496
BstEII	GGTNACC	1 cut(s)	491
BstF5I	GGATG	3 cut(s)	146, 453, 543
BstFNI	CGCG	1 cut(s)	197
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	199, 244
BstKTI	GATC	2 cut(s)	423, 569
BstMAI	GTCTC	2 cut(s)	584, 713
BstMBI	GATC	2 cut(s)	420, 566
BstMWI	GCNNNNNNNGC	3 cut(s)	310, 482, 757
BstNI	CCWGG	2 cut(s)	552, 798
BstPAI	GACNNNNGTC	1 cut(s)	725
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	550, 796
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	334, 772
BstV2I	GAAGAC	2 cut(s)	30, 763
Bsu36I	CCTNAGG	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	3 cut(s)	146, 453, 543
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	522
CfoI	GCGC	2 cut(s)	199, 244
Cfr13I	GGNCC	3 cut(s)	105, 593, 727
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	3 cut(s)	22, 47, 334
DdeI	CTNAG	3 cut(s)	67, 101, 574
DpnI	GATC	2 cut(s)	422, 568
DpnII	GATC	2 cut(s)	420, 566
Eam1104I	CTCTTC	3 cut(s)	157, 206, 452
EarI	CTCTTC	3 cut(s)	157, 206, 452
Ecl136II	GAGCTC	2 cut(s)	313, 698
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	3 cut(s)	315, 487, 700
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	2 cut(s)	593, 727
Eco53kI	GAGCTC	2 cut(s)	313, 698
Eco81I	CCTNAGG	1 cut(s)	574
Eco91I	GGTNACC	1 cut(s)	491
EcoICRI	GAGCTC	2 cut(s)	313, 698
EcoO109I	RGGNCCY	2 cut(s)	593, 727
EcoO65I	GGTNACC	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	550, 796
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	3 cut(s)	315, 487, 700
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	3 cut(s)	25, 50, 337
FaiI	YATR	4 cut(s)	23, 48, 335, 426
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	2 cut(s)	713, 814
FatI	CATG	3 cut(s)	21, 46, 333
FauI	CCCGC	2 cut(s)	525, 529
Fnu4HI	GCNGC	2 cut(s)	348, 786
FokI	GGATG	3 cut(s)	133, 440, 530
FriOI	GRGCYC	3 cut(s)	315, 487, 700
Fsp4HI	GCNGC	2 cut(s)	348, 786
FspBI	CTAG	3 cut(s)	27, 488, 701
GlaI	GCGC	2 cut(s)	198, 243
GluI	GCNGC	2 cut(s)	348, 786
GsuI	CTGGAG	3 cut(s)	303, 432, 534
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	106
HhaI	GCGC	2 cut(s)	199, 244
Hin1II	CATG	3 cut(s)	25, 50, 337
Hin6I	GCGC	2 cut(s)	197, 242
HinP1I	GCGC	2 cut(s)	197, 242
HinfI	GANTC	3 cut(s)	400, 606, 793
HphI	GGTGA	2 cut(s)	503, 839
Hpy188I	TCNGA	3 cut(s)	70, 134, 420
Hpy188III	TCNNGA	3 cut(s)	229, 282, 404
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	6 cut(s)	153, 226, 247, 452, 581, 685
HpyCH4III	ACNGT	2 cut(s)	497, 708
HpyCH4V	TGCA	4 cut(s)	94, 350, 392, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	310, 482, 757
HpyF3I	CTNAG	3 cut(s)	67, 101, 574
Hsp92II	CATG	3 cut(s)	25, 50, 337
HspAI	GCGC	2 cut(s)	197, 242
KflI	GGGWCCC	1 cut(s)	727
Kzo9I	GATC	2 cut(s)	420, 566
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	3 cut(s)	473, 482, 695
Lsp1109I	GCAGC	2 cut(s)	334, 772
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	3 cut(s)	27, 488, 701
MaeIII	GTNAC	2 cut(s)	491, 814
MalI	GATC	2 cut(s)	422, 568
MboI	GATC	2 cut(s)	420, 566
MfeI	CAATTG	1 cut(s)	647
MhlI	GDGCHC	3 cut(s)	315, 487, 700
MluCI	AATT	7 cut(s)	83, 369, 384, 528, 647, 741, 809
MseI	TTAA	2 cut(s)	710, 735
MspA1I	CMGCKG	1 cut(s)	524
MspR9I	CCNGG	2 cut(s)	552, 798
MunI	CAATTG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	659
MvaI	CCWGG	2 cut(s)	552, 798
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	310, 482, 757
NdeII	GATC	2 cut(s)	420, 566
NlaIII	CATG	3 cut(s)	25, 50, 337
NlaIV	GGNNCC	6 cut(s)	237, 277, 475, 484, 728, 729
NmuCI	GTSAC	2 cut(s)	491, 814
PciSI	GCTCTTC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	659
PfeI	GAWTC	3 cut(s)	400, 606, 793
PflMI	CCANNNNNTGG	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	349, 787
PpuMI	RGGWCCY	2 cut(s)	593, 727
PshAI	GACNNNNGTC	1 cut(s)	725
PshBI	ATTAAT	1 cut(s)	735
Psp124BI	GAGCTC	2 cut(s)	315, 700
Psp5II	RGGWCCY	2 cut(s)	593, 727
Psp6I	CCWGG	2 cut(s)	550, 796
PspEI	GGTNACC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	550, 796
PspN4I	GGNNCC	6 cut(s)	237, 277, 475, 484, 728, 729
PspPI	GGNCC	3 cut(s)	105, 593, 727
PspPPI	RGGWCCY	2 cut(s)	593, 727
SacI	GAGCTC	2 cut(s)	315, 700
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	710, 735
SatI	GCNGC	2 cut(s)	348, 786
Sau3AI	GATC	2 cut(s)	420, 566
Sau96I	GGNCC	3 cut(s)	105, 593, 727
ScrFI	CCNGG	2 cut(s)	552, 798
SduI	GDGCHC	3 cut(s)	315, 487, 700
SfaNI	GCATC	1 cut(s)	359
SinI	GGWCC	2 cut(s)	593, 727
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	7 cut(s)	83, 369, 384, 528, 647, 741, 809
SsiI	CCGC	3 cut(s)	518, 522, 749
SspMI	CTAG	3 cut(s)	27, 488, 701
SstI	GAGCTC	2 cut(s)	315, 700
StyD4I	CCNGG	2 cut(s)	550, 796
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	2 cut(s)	497, 708
TasI	AATT	7 cut(s)	83, 369, 384, 528, 647, 741, 809
TfiI	GAWTC	3 cut(s)	400, 606, 793
Tru1I	TTAA	2 cut(s)	710, 735
Tru9I	TTAA	2 cut(s)	710, 735
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	491, 814
TseI	GCWGC	2 cut(s)	347, 785
Tsp45I	GTSAC	2 cut(s)	491, 814
TspDTI	ATGAA	5 cut(s)	135, 441, 442, 753, 769
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	593, 727
VspI	ATTAAT	1 cut(s)	735
XapI	RAATTY	2 cut(s)	384, 809
XmaJI	CCTAGG	1 cut(s)	487
XspI	CTAG	3 cut(s)	27, 488, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.