Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041210.1

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1520

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041210.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

gcatccttgttgggagaagcaattacaggaaaaggaattctttcacaattgaatttggagactggagttccaatctatgaagctgagcctcttcttctcttcttcatccttttcactctgcttggagccattggagctcttggtgaccgtggtagctttgtggatgatcctcccaccggaattgagggggccgttatccctccagggaaaggtatcagaggtgccttgggtctcaaggaaggaggtcctctgttcggattcaccaaggcgaatgagctattcgtaggaagattggctcaattgggatttgcattctctctaataggagagatcatcacagggaaaggagctctagcccaattaaacattgagactggagtccccatcaatgaaatcgaacctcttgtgttgctcaatgtcgtcttcttcttccttgctgcggtgaaccccgggaccggtaaattcatcacagatgaaggtgaagaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

163

Amino Acids

16.92

Weight (kDa)

4.39

Isoelectric Point (pI)

21.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	3 cut(s)	36, 52, 461
AfiI	CCNNNNNNNGG	5 cut(s)	176, 209, 254, 439, 455
AgeI	ACCGGT	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	5 cut(s)	83, 137, 156, 277, 350
AluI	AGCT	5 cut(s)	83, 137, 156, 277, 350
Alw21I	GWGCWC	2 cut(s)	139, 352
Alw26I	GTCTC	3 cut(s)	53, 236, 365
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	3 cut(s)	36, 52, 461
AsiGI	ACCGGT	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	189, 245, 453
AsuC2I	CCSGG	2 cut(s)	450, 451
AsuHPI	GGTGA	4 cut(s)	155, 253, 454, 491
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	2 cut(s)	245, 453
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	2 cut(s)	139, 352
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	139, 352
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	450, 451
BcoDI	GTCTC	3 cut(s)	53, 236, 365
BfaI	CTAG	1 cut(s)	353
BisI	GCNGC	1 cut(s)	438
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	3 cut(s)	204, 450, 451
Bme18I	GGWCC	2 cut(s)	245, 453
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	3 cut(s)	189, 245, 453
BmiI	GGNNCC	4 cut(s)	127, 190, 223, 454
BmrFI	CCNGG	3 cut(s)	204, 450, 451
BmsI	GCATC	1 cut(s)	11
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	415
BpmI	CTGGAG	3 cut(s)	84, 186, 396
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	2 cut(s)	450, 451
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	6 cut(s)	148, 203, 225, 264, 448, 449
BsaWI	WCCGGW	2 cut(s)	176, 455
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 209, 254, 439, 455
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	67, 379
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	6 cut(s)	148, 203, 225, 264, 448, 449
BseGI	GGATG	2 cut(s)	105, 169
BseLI	CCNNNNNNNGG	5 cut(s)	176, 209, 254, 439, 455
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	67, 379
BseXI	GCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	221
BshTI	ACCGGT	1 cut(s)	455
BsiHKAI	GWGCWC	2 cut(s)	139, 352
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	3 cut(s)	177, 450, 456
BslFI	GGGAC	2 cut(s)	365, 466
BslI	CCNNNNNNNGG	5 cut(s)	176, 209, 254, 439, 455
BsmAI	GTCTC	3 cut(s)	53, 236, 365
BsmFI	GGGAC	2 cut(s)	365, 466
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	139, 352
Bsp143I	GATC	2 cut(s)	166, 330
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	4 cut(s)	127, 190, 223, 454
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	67, 379
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	6 cut(s)	148, 203, 225, 264, 448, 449
BssMI	GATC	2 cut(s)	166, 330
BssT1I	CCWWGG	2 cut(s)	225, 264
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	3 cut(s)	96, 104, 480
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	105, 169
BstKTI	GATC	2 cut(s)	169, 333
BstMAI	GTCTC	3 cut(s)	53, 236, 365
BstMBI	GATC	2 cut(s)	166, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	204
BstPAI	GACNNNNGTC	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	202, 448, 449
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	105, 169
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	3 cut(s)	189, 245, 453
Cfr9I	CCCGGG	1 cut(s)	449
CspAI	ACCGGT	1 cut(s)	455
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	168, 332
DpnII	GATC	2 cut(s)	166, 330
Eam1104I	CTCTTC	3 cut(s)	96, 104, 480
EarI	CTCTTC	3 cut(s)	96, 104, 480
Ecl136II	GAGCTC	2 cut(s)	137, 350
Eco130I	CCWWGG	2 cut(s)	225, 264
Eco24I	GRGCYC	2 cut(s)	139, 352
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	245, 453
Eco53kI	GAGCTC	2 cut(s)	137, 350
Eco88I	CYCGRG	1 cut(s)	449
Eco91I	GGTNACC	1 cut(s)	143
EcoICRI	GAGCTC	2 cut(s)	137, 350
EcoO109I	RGGNCCY	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	225, 264
EcoT38I	GRGCYC	2 cut(s)	139, 352
ErhI	CCWWGG	2 cut(s)	225, 264
FaiI	YATR	1 cut(s)	78
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	2 cut(s)	365, 466
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	92, 176
FriOI	GRGCYC	2 cut(s)	139, 352
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	1 cut(s)	438
GsuI	CTGGAG	3 cut(s)	84, 186, 396
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	3 cut(s)	177, 450, 456
HinfI	GANTC	2 cut(s)	258, 378
HpaII	CCGG	3 cut(s)	177, 450, 456
HphI	GGTGA	4 cut(s)	155, 253, 454, 491
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	2 cut(s)	218, 257
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	2 cut(s)	233, 470
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	166, 330
LmnI	GCTCC	3 cut(s)	125, 134, 347
LpnPI	CCDG	9 cut(s)	12, 48, 189, 190, 216, 324, 360, 463, 469
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	11
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	168, 332
MboI	GATC	2 cut(s)	166, 330
MboII	GAAGA	8 cut(s)	83, 86, 91, 94, 300, 415, 418, 421
MfeI	CAATTG	2 cut(s)	47, 299
MhlI	GDGCHC	2 cut(s)	139, 352
MluCI	AATT	8 cut(s)	21, 36, 47, 52, 180, 299, 359, 461
MlyI	GAGTC	1 cut(s)	387
MnlI	CCTC	8 cut(s)	99, 178, 180, 210, 212, 236, 258, 411
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	1 cut(s)	362
MspI	CCGG	3 cut(s)	177, 450, 456
MspR9I	CCNGG	3 cut(s)	204, 450, 451
MunI	CAATTG	2 cut(s)	47, 299
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	2 cut(s)	450, 451
NdeII	GATC	2 cut(s)	166, 330
NlaIV	GGNNCC	4 cut(s)	127, 190, 223, 454
NmuCI	GTSAC	1 cut(s)	143
PctI	GAATGC	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	258
PinAI	ACCGGT	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	245
PshAI	GACNNNNGTC	1 cut(s)	377
Psp124BI	GAGCTC	2 cut(s)	139, 352
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	4 cut(s)	127, 190, 223, 454
PspPI	GGNCC	3 cut(s)	189, 245, 453
PspPPI	RGGWCCY	1 cut(s)	245
SacI	GAGCTC	2 cut(s)	139, 352
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	166, 330
Sau96I	GGNCC	3 cut(s)	189, 245, 453
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	3 cut(s)	204, 450, 451
SduI	GDGCHC	2 cut(s)	139, 352
SfaNI	GCATC	1 cut(s)	11
SinI	GGWCC	2 cut(s)	245, 453
SmaI	CCCGGG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	8 cut(s)	21, 36, 47, 52, 180, 299, 359, 461
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	2 cut(s)	139, 352
StyD4I	CCNGG	3 cut(s)	202, 448, 449
StyI	CCWWGG	2 cut(s)	225, 264
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	396
TasI	AATT	8 cut(s)	21, 36, 47, 52, 180, 299, 359, 461
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	93, 94, 405, 454, 489
TspMI	CCCGGG	1 cut(s)	449
VpaK11BI	GGWCC	2 cut(s)	245, 453
XapI	RAATTY	3 cut(s)	36, 52, 461
XmaI	CCCGGG	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.