Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Reverse (-)

21549583 .. 21552843

Gene Structure 3261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26970.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCTCAAACCATGTTGCTCATGTCTAGTAGCAGTGTGGCTAAAACCAATGTGGTTGATTTGAAGTCATCAGACCCTGTACTTCAGCTACAAGTTCAGAGACTTAGACCCAAGTCATTCTCTCAGCTTGTGTTCAGGCCACTTCCTTCTTCCACTACCTCATTGAGATCATCAGGCGTGGTTGCTCTCTTCAAATCGAAAACCAAAGCCCCTGTCAAGAAGGCATCACCGCCGAAGCCCAAGGTTGAATCTGGTATCTTTGGAACATCCGGAGGCATTGGTTTTACAAAGGAGAATGAGCTCTTCGTCGGTCGTGTTGCCATGATTGGTTTTGCTGCATCCTTATTGGGAGAAGCAATTACAGGAAAAGGAATTCTTCAACAATTGAATTTGGAGACTGGAATTCCAATCTATGAAGCTGAGCCTCTTCTTCTTTTCTTCATCCTTTTCACCCTGCTTGGAGCCATTGGAGCTCTTGGTGACCGTGGTCAGTTTGTGGACGACACTCCTGGAATTGAAGGGGCGGTTATCCCGCCAGGGAAAGGATTGAAATCTGCCTTGGGTCTCAAGGAAGGAGGTCCTTTGTTCGGATTCACCAAGGCGAATGAGCTATTCGTAGGAAGATTGGCTCAGTTGGGATTTGCATTCTCTCTAATAGGAGAGATCATCACAGGGAAGGGAGCTCTAGCCCAGTTAAACATTGAGACCGGAGTCCCCATCAATGAAATCGAACCTCTGGTGTTGCTCAATGTCGTCTTCTTCTTCCTTGCTGCAGTGAACCCCGGTACCGGTAAATTCATCACAGATGAAGATGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

274

Amino Acids

28.78

Weight (kDa)

7.85

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	66 - 190	7.3e-08	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	785
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	3 cut(s)	230, 524, 533
AcsI	RAATTY	4 cut(s)	372, 388, 402, 794
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	2 cut(s)	81, 787
AfiI	CCNNNNNNNGG	3 cut(s)	542, 587, 788
AgeI	ACCGGT	1 cut(s)	788
AgsI	TTSAA	7 cut(s)	64, 193, 248, 380, 388, 518, 550
AjnI	CCWGG	2 cut(s)	508, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AluBI	AGCT	7 cut(s)	88, 127, 301, 419, 473, 610, 683
AluI	AGCT	7 cut(s)	88, 127, 301, 419, 473, 610, 683
Alw21I	GWGCWC	3 cut(s)	303, 475, 685
Alw26I	GTCTC	4 cut(s)	94, 389, 569, 698
AlwNI	CAGNNNCTG	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	335, 770
ApoI	RAATTY	4 cut(s)	372, 388, 402, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AsiGI	ACCGGT	1 cut(s)	788
Asp718I	GGTACC	1 cut(s)	785
AspS9I	GGNCC	1 cut(s)	578
AsuC2I	CCSGG	1 cut(s)	783
AsuHPI	GGTGA	4 cut(s)	219, 442, 491, 586
AvaII	GGWCC	1 cut(s)	578
BaeI	ACNNNNGTAYC	2 cut(s)	769, 802
BanI	GGYRCC	1 cut(s)	785
BanII	GRGCYC	3 cut(s)	303, 475, 685
BbsI	GAAGAC	1 cut(s)	748
Bbv12I	GWGCWC	3 cut(s)	303, 475, 685
BbvI	GCAGC	2 cut(s)	322, 757
BccI	CCATC	1 cut(s)	725
BciT130I	CCWGG	2 cut(s)	510, 537
BcnI	CCSGG	1 cut(s)	783
BcoDI	GTCTC	4 cut(s)	94, 389, 569, 698
BfaI	CTAG	2 cut(s)	27, 686
BfmI	CTRYAG	1 cut(s)	771
BisI	GCNGC	2 cut(s)	336, 771
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	2 cut(s)	337, 772
Bme1390I	CCNGG	3 cut(s)	510, 537, 783
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	463, 787
BmrFI	CCNGG	3 cut(s)	510, 537, 783
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	2 cut(s)	233, 347
BmuI	ACTGGG	1 cut(s)	685
BoxI	GACNNNNGTC	3 cut(s)	112, 486, 710
BpiI	GAAGAC	1 cut(s)	748
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	783
BsaBI	GATNNNNATC	1 cut(s)	550
BsaI	GGTCTC	2 cut(s)	569, 698
BsaJI	CCNNGG	6 cut(s)	240, 484, 536, 558, 597, 781
BsaWI	WCCGGW	3 cut(s)	269, 707, 788
Bsc4I	CCNNNNNNNGG	3 cut(s)	542, 587, 788
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	2 cut(s)	403, 691
Bse8I	GATNNNNATC	1 cut(s)	550
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	510, 537
BseDI	CCNNGG	6 cut(s)	240, 484, 536, 558, 597, 781
BseGI	GGATG	3 cut(s)	266, 338, 441
BseJI	GATNNNNATC	1 cut(s)	550
BseLI	CCNNNNNNNGG	3 cut(s)	542, 587, 788
BseMII	CTCAG	3 cut(s)	137, 411, 644
BseNI	ACTGG	2 cut(s)	403, 691
BseXI	GCAGC	2 cut(s)	322, 757
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	785
BshTI	ACCGGT	1 cut(s)	788
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	3 cut(s)	303, 475, 685
BsiSI	CCGG	4 cut(s)	270, 708, 783, 789
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	3 cut(s)	542, 587, 788
BsmAI	GTCTC	4 cut(s)	94, 389, 569, 698
BsmFI	GGGAC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	1 cut(s)	139
Bso31I	GGTCTC	2 cut(s)	569, 698
Bsp1286I	GDGCHC	3 cut(s)	303, 475, 685
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	167, 663
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	3 cut(s)	230, 524, 533
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	3 cut(s)	136, 412, 643
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	463, 787
BspMAI	CTGCAG	1 cut(s)	775
BspQI	GCTCTTC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	785
BspTNI	GGTCTC	2 cut(s)	569, 698
BsrFI	RCCGGY	1 cut(s)	788
BsrI	ACTGG	2 cut(s)	403, 691
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	6 cut(s)	240, 484, 536, 558, 597, 781
BssMI	GATC	2 cut(s)	167, 663
BssT1I	CCWWGG	3 cut(s)	240, 558, 597
Bst2UI	CCWGG	2 cut(s)	510, 537
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	4 cut(s)	194, 308, 432, 810
BstDEI	CTNAG	4 cut(s)	104, 123, 420, 630
BstDSI	CCRYGG	1 cut(s)	484
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	266, 338, 441
BstKTI	GATC	2 cut(s)	170, 666
BstMAI	GTCTC	4 cut(s)	94, 389, 569, 698
BstMBI	GATC	2 cut(s)	167, 663
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	2 cut(s)	510, 537
BstPAI	GACNNNNGTC	3 cut(s)	112, 486, 710
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	3 cut(s)	508, 535, 781
BstSFI	CTRYAG	1 cut(s)	771
BstV1I	GCAGC	2 cut(s)	322, 757
BstV2I	GAAGAC	1 cut(s)	748
BsuRI	GGCC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	266, 338, 441
BtsI	GCAGTG	2 cut(s)	40, 780
BtsIMutI	CAGTG	2 cut(s)	40, 780
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	1 cut(s)	578
Csp6I	GTAC	2 cut(s)	80, 786
CspAI	ACCGGT	1 cut(s)	788
CviAII	CATG	3 cut(s)	13, 22, 322
CviQI	GTAC	2 cut(s)	80, 786
DdeI	CTNAG	4 cut(s)	104, 123, 420, 630
DpnI	GATC	2 cut(s)	169, 665
DpnII	GATC	2 cut(s)	167, 663
Eam1104I	CTCTTC	4 cut(s)	194, 308, 432, 810
EarI	CTCTTC	4 cut(s)	194, 308, 432, 810
Ecl136II	GAGCTC	3 cut(s)	301, 473, 683
Eco130I	CCWWGG	3 cut(s)	240, 558, 597
Eco24I	GRGCYC	3 cut(s)	303, 475, 685
Eco31I	GGTCTC	2 cut(s)	569, 698
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	3 cut(s)	301, 473, 683
Eco57I	CTGAAG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	479
EcoICRI	GAGCTC	3 cut(s)	301, 473, 683
EcoO109I	RGGNCCY	1 cut(s)	578
EcoO65I	GGTNACC	1 cut(s)	479
EcoRI	GAATTC	2 cut(s)	372, 402
EcoRII	CCWGG	2 cut(s)	508, 535
EcoT14I	CCWWGG	3 cut(s)	240, 558, 597
EcoT38I	GRGCYC	3 cut(s)	303, 475, 685
ErhI	CCWWGG	3 cut(s)	240, 558, 597
FaeI	CATG	3 cut(s)	16, 25, 325
FaiI	YATR	4 cut(s)	14, 23, 323, 414
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	3 cut(s)	12, 21, 321
FauI	CCCGC	1 cut(s)	540
Fnu4HI	GCNGC	2 cut(s)	336, 771
FokI	GGATG	3 cut(s)	253, 325, 428
FriOI	GRGCYC	3 cut(s)	303, 475, 685
Fsp4HI	GCNGC	2 cut(s)	336, 771
FspBI	CTAG	2 cut(s)	27, 686
GluI	GCNGC	2 cut(s)	336, 771
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	4 cut(s)	270, 708, 783, 789
Hin1II	CATG	3 cut(s)	16, 25, 325
HinfI	GANTC	3 cut(s)	248, 591, 711
HpaII	CCGG	4 cut(s)	270, 708, 783, 789
HphI	GGTGA	4 cut(s)	219, 442, 491, 586
Hpy166II	GTNNAC	2 cut(s)	499, 778
Hpy188I	TCNGA	3 cut(s)	73, 99, 590
Hpy188III	TCNNGA	2 cut(s)	217, 270
Hpy8I	GTNNAC	2 cut(s)	499, 778
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	5 cut(s)	156, 214, 512, 566, 670
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	3 cut(s)	338, 644, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	4 cut(s)	104, 123, 420, 630
Hsp92II	CATG	3 cut(s)	16, 25, 325
Kpn2I	TCCGGA	1 cut(s)	269
KpnI	GGTACC	1 cut(s)	789
Kzo9I	GATC	2 cut(s)	167, 663
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	3 cut(s)	461, 470, 680
Lsp1109I	GCAGC	2 cut(s)	322, 757
LweI	GCATC	2 cut(s)	233, 347
MaeI	CTAG	2 cut(s)	27, 686
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	2 cut(s)	169, 665
MboI	GATC	2 cut(s)	167, 663
MfeI	CAATTG	1 cut(s)	383
MhlI	GDGCHC	3 cut(s)	303, 475, 685
MluCI	AATT	7 cut(s)	357, 372, 383, 388, 402, 513, 794
MlyI	GAGTC	1 cut(s)	720
MnlI	CCTC	5 cut(s)	169, 266, 435, 569, 744
MroI	TCCGGA	1 cut(s)	269
MseI	TTAA	1 cut(s)	695
MspI	CCGG	4 cut(s)	270, 708, 783, 789
MspR9I	CCNGG	3 cut(s)	510, 537, 783
MunI	CAATTG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	644
MvaI	CCWGG	2 cut(s)	510, 537
MwoI	GCNNNNNNNGC	1 cut(s)	470
NciI	CCSGG	1 cut(s)	783
NdeII	GATC	2 cut(s)	167, 663
NlaIII	CATG	3 cut(s)	16, 25, 325
NlaIV	GGNNCC	2 cut(s)	463, 787
NmuCI	GTSAC	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	308
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	2 cut(s)	248, 591
PfoI	TCCNGGA	1 cut(s)	508
PinAI	ACCGGT	1 cut(s)	788
PkrI	GCNGC	2 cut(s)	337, 772
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	578
PshAI	GACNNNNGTC	3 cut(s)	112, 486, 710
Psp124BI	GAGCTC	3 cut(s)	303, 475, 685
Psp5II	RGGWCCY	1 cut(s)	578
Psp6I	CCWGG	2 cut(s)	508, 535
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	2 cut(s)	508, 535
PspN4I	GGNNCC	2 cut(s)	463, 787
PspPI	GGNCC	1 cut(s)	578
PspPPI	RGGWCCY	1 cut(s)	578
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	81, 787
RsaNI	GTAC	2 cut(s)	80, 786
SacI	GAGCTC	3 cut(s)	303, 475, 685
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	695
SatI	GCNGC	2 cut(s)	336, 771
Sau3AI	GATC	2 cut(s)	167, 663
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	1 cut(s)	720
ScrFI	CCNGG	3 cut(s)	510, 537, 783
SduI	GDGCHC	3 cut(s)	303, 475, 685
SfaNI	GCATC	2 cut(s)	233, 347
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	7 cut(s)	357, 372, 383, 388, 402, 513, 794
SsiI	CCGC	3 cut(s)	230, 524, 533
SspMI	CTAG	2 cut(s)	27, 686
SstI	GAGCTC	3 cut(s)	303, 475, 685
StyD4I	CCNGG	3 cut(s)	508, 535, 781
StyI	CCWWGG	3 cut(s)	240, 558, 597
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	2 cut(s)	197, 729
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	7 cut(s)	357, 372, 383, 388, 402, 513, 794
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	248, 591
Tru1I	TTAA	1 cut(s)	695
Tru9I	TTAA	1 cut(s)	695
TscAI	CASTG	2 cut(s)	40, 780
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	2 cut(s)	335, 770
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	5 cut(s)	429, 430, 738, 787, 822
TspRI	CASTG	2 cut(s)	40, 780
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	4 cut(s)	372, 388, 402, 794
XspI	CTAG	2 cut(s)	27, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.