Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396499.1

Orthogroup ID

OG0008089

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 657

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396499.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgttgctcatgtctagtagcagtgtggctaaaaccaatgtggtcgatttgaagtcatcggaccctttacttcagctacaagttcagagacttagacccaagtcattctctcagcttgtgttcaggccactcccttcttcgaccacttcgttgagatcatcaggcgtggttgctctcttcaaatcgaaaaccaaagcccctgtcagcaagaaggcaccatcgccgaagcccaaagttgaatctggtatctttggaacatccggaggcattggttttacaaaggagaatgagctcttcgtgggtcgtgttgccatgattggttttgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055035 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

109

Amino Acids

11.61

Weight (kDa)

10.86

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44575 AT1G44575 AT1G44575
fragaria_vesca	FvH4_2g26970 FvH4_2g26970
malus_domestica	MD08G1162600.v1.1 MD15G1348200.v1.1
prunus_persica	Prupe.1G497100_v2.0.a1 Prupe.1G497100_v2.0.a1
pyrus_communis	pycom08g14050 pycom15g31190
rosa_chinensis	RchiOBHm_Chr6g0295831
rosa_laevigata	RLG00000011764
rosa_multiflora	Rmu_co8396499.1_g000001 Rmu_sc0030195.1_g000001 Rmu_sc0041210.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172140
rosa_rugosa	Rorug06G0254200 Rorug06G0254300
rosa_samantha	Rh6AG368200 Rh6BG375800 Rh6CG382100 Rh6DG368600
rosa_wichuraiana	Rw6G032100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccIII	TCCGGA	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	52, 181, 239
AluBI	AGCT	3 cut(s)	76, 115, 292
AluI	AGCT	3 cut(s)	76, 115, 292
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AspS9I	GGNCC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	63, 216
BoxI	GACNNNNGTC	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	260
BseAI	TCCGGA	1 cut(s)	260
BseGI	GGATG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	63, 216
BspQI	GCTCTTC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	214
BssMI	GATC	1 cut(s)	155
Bst6I	CTCTTC	2 cut(s)	182, 299
BstDEI	CTNAG	2 cut(s)	92, 111
BstF5I	GGATG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	155
BstPAI	GACNNNNGTC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	127
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	257
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	61
CviAII	CATG	2 cut(s)	10, 313
CviJI	RGCY	7 cut(s)	29, 76, 115, 127, 197, 229, 292
CviKI_1	RGCY	7 cut(s)	29, 76, 115, 127, 197, 229, 292
DdeI	CTNAG	2 cut(s)	92, 111
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Eam1104I	CTCTTC	2 cut(s)	182, 299
EarI	CTCTTC	2 cut(s)	182, 299
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	2 cut(s)	13, 316
FaiI	YATR	2 cut(s)	11, 314
FatI	CATG	2 cut(s)	9, 312
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	2 cut(s)	13, 316
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	61, 87
Hpy188III	TCNNGA	1 cut(s)	261
HpyAV	CCTTC	2 cut(s)	144, 205
HpyF3I	CTNAG	2 cut(s)	92, 111
Hsp92II	CATG	2 cut(s)	13, 316
Kpn2I	TCCGGA	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	155
LguI	GCTCTTC	1 cut(s)	299
LpnPI	CCDG	5 cut(s)	109, 147, 213, 228, 274
MaeI	CTAG	1 cut(s)	15
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	3 cut(s)	129, 169, 286
MhlI	GDGCHC	1 cut(s)	294
MnlI	CCTC	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	260
MspI	CCGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	13, 316
NlaIV	GGNNCC	2 cut(s)	63, 216
PciSI	GCTCTTC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	63, 216
PspPI	GGNCC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	155
Sau96I	GGNCC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	3 cut(s)	78, 117, 294
SinI	GGWCC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	294
TaqI	TCGA	3 cut(s)	45, 140, 185
TfiI	GAWTC	1 cut(s)	239
TscAI	CASTG	1 cut(s)	28
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	61
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.